KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:30:56 2014 Check: 00 .. Name: ENSTTRP00000014548/1-1206 Len: 1266 Check: 8527 Weight: 1.00 Name: ENSP00000170168/1-1221 Len: 1266 Check: 8684 Weight: 1.00 Name: ENSBTAP00000026945/1-1211 Len: 1266 Check: 3867 Weight: 1.00 Name: bmy_15772T0/1-1143 Len: 1266 Check: 1699 Weight: 1.00 Name: BACU006483/1-1178 Len: 1266 Check: 1449 Weight: 1.00 // 1 50 ENSTTRP00000014548/1-1206 MLRSTGFFRT IDCPYWAGAP G------GPC RRPYCHFRHR ---------- ENSP00000170168/1-1221 MLRSTGFFRA IDCPYWSGAP G------GPC RRPYCHFRHR ---------- ENSBTAP00000026945/1-1211 MLRSTGFFRA IDCPYWAGAP G------GPC RRPYCHFRHR ---------- bmy_15772T0/1-1143 MLRSTGFFRT IDCPYWVGAP G------GPC RRPYCHFRHR ---------- BACU006483/1-1178 --MDTNL--S VSCARLAVHP TLCFPNIAHC RTSFTPWRCS LDVIVLRFPR 51 100 ENSTTRP00000014548/1-1206 ----GARGPG AP-----GEG GAAPPAAXXX XXXXXXXXXX XXXXXXNGAL ENSP00000170168/1-1221 ----GARGSG AP-----GDG GEAPPAAGLG YDPYNPELPK PPAQRENGTL ENSBTAP00000026945/1-1211 ----GARGPG AP-----GEG GAVSPAAGLG YDPYNPELPK PPAQRENGAL bmy_15772T0/1-1143 ----GARGPG AP-----GEG GAAPPAAGLG YDPYNPELPK PPAQRENGAL BACU006483/1-1178 EMCCAVLRPP HPLPLPSGRF GAFCVLTGLG YDPYNPELPK PPAQREKGAL 101 150 ENSTTRP00000014548/1-1206 GRGAEPRSDI LELELVNQAI EAVRSEVELE QRRYRELLET AREHGSAEAP ENSP00000170168/1-1221 GLGEEPRPDV LELELVNQAI EAVRSEVELE QRRYRELLET TREHRSAEAP ENSBTAP00000026945/1-1211 GRGIDSRSDI LELELVNQAI EAVRSEVELE QRRYQELLET ARECGSAEAP bmy_15772T0/1-1143 GRGAEPRSDI LELELVNQAI EAVRSEVELE QRRYRELLET AREHGSAEAP BACU006483/1-1178 GRGAEPRSDI LELELVNQAI EAVRSEVELE QRRYRELLET AREHGSAEAP 151 200 ENSTTRP00000014548/1-1206 ALAPHGPTA- ---GLDGDTF SLSFEYNPGG RGLLSPDASY QPTPLASPTE ENSP00000170168/1-1221 ALAPRGPNAS PTVGPDEDAF PLAFDYSPGS HGLLSPDAGY QPTPLAAPAE ENSBTAP00000026945/1-1211 VLAPHGPAAC PATSLDGDAF PLSFDYNPSG HGLLSPDASY QPTPLAATAE bmy_15772T0/1-1143 ALAPHGPTA- ---GLDGDAF PLSFEYNPGG RGLLSPDASY QPTPLASPTE BACU006483/1-1178 ALAPHGPTA- ---GLDGDAF PLSFEYNPGG RGLLSPDASY QPTPLASPTE 201 250 ENSTTRP00000014548/1-1206 PGTKYSLASV DRGQGHGGGA GGTLEYVPKA VGQPRRYGRP ISSGKYVVDN ENSP00000170168/1-1221 PGSKYSLASL DRGQGRGGGG GGALEYVPKA VSQPRRHSRP VPSGKYVVDN ENSBTAP00000026945/1-1211 PGCKYSLASP DRAQGHGGGG GGALEYVPKA VGQPRRYSRP VSSSKYVVDN bmy_15772T0/1-1143 PGTKYSLASL DRGQGHGGGA GGTLEYVPKA VGQPRRYGRP VSSGKYVVDN BACU006483/1-1178 PGTKYSLASL DRGQGHGGGA GGTLEYVPKA VGQPRRYGRP VSSGKYVVDN 251 300 ENSTTRP00000014548/1-1206 SKPSTDLEYD PLSNFSARLL SRASTKDDRA PKRPRGSRGS EPYTPAPKKP ENSP00000170168/1-1221 SRPPTDLEYD PLSNYSARHL SRASSRDERA AKRPRGSRGS EPYTPAPKKL ENSBTAP00000026945/1-1211 SKPSTDLEYD PLSNFSARLL SRASTKDERA PKRPRSSRGS EPYTPAPKKP bmy_15772T0/1-1143 SKPSTDLEYD PLSNFSARLL SRASTKDDRA PKRPRGSRGS EPYTPAPKKP BACU006483/1-1178 SKPSTDLEYD PLSNFSARLL SRASSKDDRA PKRPRGSRGS EPYTPAPKKP 301 350 ENSTTRP00000014548/1-1206 CDPFGGCDAR FSDSDDDTAA APGDRLATAS PPRARVGPES KALGKPGSRE ENSP00000170168/1-1221 CDPFGSCDAR FSDSEDEAAT VPGNEPTTAS TPKARADPEI KATGQPPSKE ENSBTAP00000026945/1-1211 CDPFGSCDAR FSDSDDDAVV TPGDKSVTTS PPRAQGGAES KAPGKPGSRE bmy_15772T0/1-1143 CDPFGSCDAR FSDSDDDTAA APGDRPATAS PPRARAGPES KAPGKPGSRE BACU006483/1-1178 CDPFGGCDAR FSDSDDDTAA APGDRPATAS PPRARAGPES KAPGKPGSRE 351 400 ENSTTRP00000014548/1-1206 GPEPEEGSLR ETKEMAVQYD VGDLGQPAKG PGG-----PS CQAQFRASQE ENSP00000170168/1-1221 GLEAEGGGLR ETKETAVQCD VGDLQPPP-- ------AKPA SPAQVQSSQD ENSBTAP00000026945/1-1211 GPELEEGSLR ETKEMAVQCD VEDLGPPPRS PGRPPLAKPS SPA--RAAPE bmy_15772T0/1-1143 GPEPEEGSLR ETKEMAVQYD VGDLGQPAKG PGGLPPAKPS SPG--RASQE BACU006483/1-1178 GPEPEEGSLR ETKEMAVQYD VGDLGQPAKG PGGLPPAKPS SPG--RASQE 401 450 ENSTTRP00000014548/1-1206 RSSPKEGRPK KKKSGGPPAA GRKDGVGKTG RGQDGEHGRP AEKPCVDRRG ENSP00000170168/1-1221 GGCPKEGKPK KKKTGAPPAP SCKDGAQGKD KTKDKGRGRP VEKPRADKKG ENSBTAP00000026945/1-1211 RSSPKEGRP- KKKSGVSPTA SHKDSVRKTD KGKDGARGRP AEKPAADRRG bmy_15772T0/1-1143 RSSPKEGRPK KKKSGGLPAA GRKDGVGKTG RGQGGEHGRP AEKPCVDRRG BACU006483/1-1178 RSSPKEGRPK KKKSGGPPAA GRKDGVGKTG RGQGGEHGRP AEKPCVDRRG 451 500 ENSTTRP00000014548/1-1206 PRAGSPRHRA ERPQGTKNKP SSATPVASSG KGRPEGLGPR PCPAQGAAY- ENSP00000170168/1-1221 PQASSPRRKA ERPEGTKKKP SSATPVATSG KGRPDRPARR PSPTSGDSRP ENSBTAP00000026945/1-1211 PQAGSPRHKA ERPQGTKKKP SSATPVASSG KGRPEWPGPL LSPAQGAAR- bmy_15772T0/1-1143 PQAGSPRHRA ERPQGTKKKP SSATPVASSG KGRPEWPGPR PSPAQGATH- BACU006483/1-1178 PQAGSPRHRA ERPQGTKKKP SSATPVASSG KGRPEWPGPR PSPAQGAAH- 501 550 ENSTTRP00000014548/1-1206 ---------- QLPDRMGRKT PSGKLAQRKA RSLDEGAPRG APKLPRRALS ENSP00000170168/1-1221 AAGRGPPRPL QLPDRKSTKA PSGKLVERKA RSLDEGASQD APKLKKRALS ENSBTAP00000026945/1-1211 ---------- QPSDRIAGKT LSGKLAERKA LSLDEGAPRD APKLPRRTLS bmy_15772T0/1-1143 ---------- QLPDRTGRKT PSGKLAERKA RSLDEGAPRG APKLPRRALS BACU006483/1-1178 ---------- QLPDRTGRKT PSGKLAERKA RSLDEGAPRG APKLPRRALS 551 600 ENSTTRP00000014548/1-1206 LSELFGDESX XXXXXXXXXX XXXXXXXXXX ------XXXX XXXXXXXXXX ENSP00000170168/1-1221 HADLFGDESE DEAAGPGVPS VWPSALPSLS ------SDSD SDSDSSLGFP ENSBTAP00000026945/1-1211 HAELFGDESE DEDPRPQTPA TRPLAPPSLS SSSDSDSDSD SDSDSSLGLS bmy_15772T0/1-1143 HAELFGDESE DEDPGPEAPA LRPPALPSLS ------SSSD SDSDSSLGLS BACU006483/1-1178 HAELFGDESE DEDPGPEAPA PRPPALPSLS ------SSSD SDSDSSLGLS 601 650 ENSTTRP00000014548/1-1206 XXXXXXXXXX XXXXXX---- --XXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000170168/1-1221 EAQGPPKRLK ASPPPS---- --PAPSSSSS SSSSTSSAGA DVDYSALEKE ENSBTAP00000026945/1-1211 AARGPPKRLK ASPPPS---- ---------- -SSSSSGAGS DVDYSALEKE bmy_15772T0/1-1143 GARGPPKRLK ASLPPSASRS SPPPPSSSSS SSSSSSGAGS DVDYSALEKE BACU006483/1-1178 CAQGPPKRLK ASLPPS---- ---ACRSSSS SSSSSSGAGS DVDYSALEKE 651 700 ENSTTRP00000014548/1-1206 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXPPKEEKTE EQGHSGLTTL ENSP00000170168/1-1221 VDFDSDPMEE CLRIFNESTS VKTEDRGRLA RQPPKEEKSE EKGLSGLTTL ENSBTAP00000026945/1-1211 VDFDSDPMEE CLRIFNESTA VKTEDKGRLA RQPSKEEKTE DKGHSGLTTL bmy_15772T0/1-1143 VDFDSDPMEE CLRIFNESTA VKTEDKGRLA RQ-------- ---------- BACU006483/1-1178 VDFDSDPMEE CLRIFNESTA VKTEDKGRLA R--------- ---------- 701 750 ENSTTRP00000014548/1-1206 FPGQKRRISH LSKQGKEAEP TSRGPA-PPT RPPTAQEVCY RRAQQAQRES ENSP00000170168/1-1221 FPGQKRRISH LSKQGQEVEP PRRGPAVPPA RPPTAQEVCY LRAQQAQRAS ENSBTAP00000026945/1-1211 FPGQKRRISH LSKQGKEVEP TRRGPA-PPA RPPTAQEVCY RRAQQAQRES bmy_15772T0/1-1143 ---------- -------AEP TSRGPA-PPT RPPTAQEVCY RRAQQAQRES BACU006483/1-1178 ---------- ---------- ---------- -----QEVCY RRAQQAQRES 751 800 ENSTTRP00000014548/1-1206 ASRLQAPA-L AEKQSSMHIS APGEKRRIAH VPNPLLAAAP TGAKRTLSAG ENSP00000170168/1-1221 ASLLQAPARL AEKSPSVHIS APGEKRRIAH IPNPRLAAAP TGAKRTLAAS ENSBTAP00000026945/1-1211 AGWLQAAQQL GEKPSSVHIS APGEKRRIAH VPNPLLAAAP TGAKRTLSAS bmy_15772T0/1-1143 ASRLQAAQPL AEKQSSMHIS APGEKRRIAH ---------- ----RTLSAS BACU006483/1-1178 ASRLQAAQPL AEKQSSMHIS APGEKRRIAH VPNPLLAAAP TGAKRTLSAS 801 850 ENSTTRP00000014548/1-1206 SSQPPNGPEP GSQPLKTRTL SGMASKTTAT VAPKRVAHSP SLQSLKKPVI ENSP00000170168/1-1221 GSQSSNGPEP GGQQLKTRTL SGMASKTTTT IIPKRIAHSP SLQSLKKPII ENSBTAP00000026945/1-1211 SSQPPSGPEP GSQPLKTRTL SGMASKTTTT MAPKRVAHSP SLQSLKKPII bmy_15772T0/1-1143 SSQPPNGPEP GSQPLNTRTL SGMASKTTAT VAPKRVAHSP SLQSLKKPVI BACU006483/1-1178 SSQPPNGPEP GSQPLKTRTL SGMASKTTAT VAPKRVAHSP SLQSLKKPVI 851 900 ENSTTRP00000014548/1-1206 PKEFGGKVPT VIRQRYLNLF IEECLKFCSS NQEAIEKALN EEKVAYDRSP ENSP00000170168/1-1221 PKEFGGKVPT VIRQRYLNLF IEECLKFCTS NQEAIEKALN EEKVAYDRSP ENSBTAP00000026945/1-1211 PKEFGGKVPT VIRQRYLNLF IEECLKFCSS NQEAIEKALN EEKVAYDRSP bmy_15772T0/1-1143 PKEFGGKVPT VIRQRYLNLF IEECLKFCSS NQEAVEKALN EEKVAYDRSP BACU006483/1-1178 PKEFGGKVPT VIRQRYLNLF IEECLKFCSS NQEAVEKALN EEKVAYDRSP 901 950 ENSTTRP00000014548/1-1206 SKNIYLNVAV NTLKKLRGLG PGTGPGLNXX XXXXXXXXXX XXXXXXXXXX ENSP00000170168/1-1221 SKNIYLNVAV NTLKKLRGLA PSAVPGLSKT SGRRVVSHEV VLGGRLAAKT ENSBTAP00000026945/1-1211 SKNIYLNVAV NTLKKLRGLG PGAGAGLNKT SGRRVVSHEV VLGGKLAART bmy_15772T0/1-1143 SKNIYLNVAV NTLKKLRGLG PGTGPGLNKP SGRRVVSHEV VLGGKLAAKT BACU006483/1-1178 SKNIYLNVAV NTLKKLRGLG PGTGPGLNKP SGRRVVSHEV VLGGKLAAKT 951 1000 ENSTTRP00000014548/1-1206 XXXXXXXXXX XXXXXXXXXX XXXXKEYLLT EAQLKENGYP FPHPEKR-GA ENSP00000170168/1-1221 SFSLSRPSSP RVEDLKGAAL YSRLREYLLT QDQLKENGYP FPHPERPGGA ENSBTAP00000026945/1-1211 SFSLSRPSSP RVEDLKGAAL YSRLKEYLLT EGQLKENGYP FPHPEKPGGA bmy_15772T0/1-1143 SFSLSRPSSP RVEDLKGATL YSRLKEYLLT EAQLKENGYP FPHPEKPGGA BACU006483/1-1178 SFSLSRPSSP RVEDLKGATL YSRLKEYLLT EAQLKENGYP FPHPEKPGGA 1001 1050 ENSTTRP00000014548/1-1206 VIFTAEEKKP KDSACRVCCR CGAEYLVSSS GRCVRDEECY YHWGRLRRNR ENSP00000170168/1-1221 IIFTAEEKRP KDSSCRTCCR CGTEYLVSSS GRCIRDEECY YHWGRLRRNR ENSBTAP00000026945/1-1211 VIFTAEEKKP KDSSCRICCR CGAEYLVSSS GRCVREEECY YHWGRLRRNR bmy_15772T0/1-1143 VIFTAEEKKP KDSACRVCCR CGAEYLVSSS GRCVRDEECY YHWGRLRRNR BACU006483/1-1178 VIFTAEEKKP KDSACRVCCR CGAEYLVSSS GRCVRDEECY YHWGRLRRNR 1051 1100 ENSTTRP00000014548/1-1206 VAGGWETQYT CCSAAIGSAG CQVAKQHVQD GRKENLEGFV KTFEKELSGD ENSP00000170168/1-1221 VAGGWETQYM CCSAAAGSVG CQVAKQHVQD GRKERLEGFV KTFEKELSGD ENSBTAP00000026945/1-1211 VAGGWETQYT CCSAAIGSTG CQVAKQHVQD GRKENLEGFV KTFEKELSGD bmy_15772T0/1-1143 VAGGWETQYT CCSAAIGSTG CQVAKQHVQD GRKENLEGFV KTFEKELSGD BACU006483/1-1178 VAGGWETQYT CCSAAIGSTG CQVAKQHVQD GRKENLEGFV KTFEKELSGD 1101 1150 ENSTTRP00000014548/1-1206 AHPGVYALDC EMSYTTYGLE LTRVTVVDTE LQVVYDTFVR PDNEIVDYNT ENSP00000170168/1-1221 THPGIYALDC EMSYTTYGLE LTRVTVVDTD VHVVYDTFVK PDNEIVDYNT ENSBTAP00000026945/1-1211 AHPGVYALDC EMSYTTYGLE LTRVTVVDTD LQVVYDTFVR PDNEIVDYNT bmy_15772T0/1-1143 AHPGVYALDC EMSYTTYGLE LTRVTVVDAE LQVVYDTFVR PDNEIVDYNT BACU006483/1-1178 AHPGVYALDC EMSYTTYGLE LTRVTVVDTE LQVVYDTFVR PDNEIVDYNT 1151 1200 ENSTTRP00000014548/1-1206 RFSGVTEADL TDTSISLRDV QAVLLSMFSS DTILIGHSLE SDLLALKVIH ENSP00000170168/1-1221 RFSGVTEADL ADTSVTLRDV QAVLLSMFSA DTILIGHSLE SDLLALKVIH ENSBTAP00000026945/1-1211 RFSGVTEADL ADTSISLRDV QAVLLSMFSS DTVLIGHSLE SDLLCLQVIH bmy_15772T0/1-1143 RFSGVTEADL TDTSISLRDV QAVLLSMFSS DTILIGHSLE SDLLALKVVH BACU006483/1-1178 RFSGVTEADL TDTSISLRDV QAVLLSMFSS DTILIGHSLE SDLLALKVVH 1201 1250 ENSTTRP00000014548/1-1206 STVVDTSVLF PHRLGLPYKR SLRNLMADYL RQIIQDNVDG HSSSEDASAC ENSP00000170168/1-1221 STVVDTSVLF PHRLGLPYKR SLRNLMADYL RQIIQDNVDG HSSSEDAGAC ENSBTAP00000026945/1-1211 STVVDTSVLF PHRLGLPYKR SLRNLMADYL RQIIQDNVDG HSSSEDASAC bmy_15772T0/1-1143 STVVDTSVLF PHRLGLPYKR SLRNLMADYL RQIIQDNGE- ---------C BACU006483/1-1178 STVVDTSVLF PHRLGLPYKR SLRNLMADYL RQIIQDNVDG HSSSEDASAC 1251 1300 ENSTTRP00000014548/1-1206 MHLVIWKIRE DAKTKR ENSP00000170168/1-1221 MHLVIWKVRE DAKTKR ENSBTAP00000026945/1-1211 MHLVIWKIRE DAKTKR bmy_15772T0/1-1143 ---------- -----R BACU006483/1-1178 MHLVIWKIRE DAKTKR