KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 4 Type: P Thu May 15 17:30:56 2014 Check: 00 ..
Name: BACU007459/1-238 Len: 269 Check: 9360 Weight: 1.00
Name: bmy_03375T0/1-221 Len: 269 Check: 7653 Weight: 1.00
Name: ENSTTRP00000015322/1-238 Len: 269 Check: 5682 Weight: 1.00
Name: ENSBTAP00000026958/1-238 Len: 269 Check: 6319 Weight: 1.00
//
1 50
BACU007459/1-238 MGLRSLSAWP AASGLGWLAA VWAGVRAAVW FPGVCEAAAG CRLRGQVLIL
bmy_03375T0/1-221 --------MA AAPLLLLLLL V-----PVPL LPLLAQGPGG A---------
ENSTTRP00000015322/1-238 --------MA AAPLLLLLLL V-----PVPL LPLLAQGPGG A---------
ENSBTAP00000026958/1-238 --------MA AAPLLLLLLL V-----PVPL LPLLAQGPGG A---------
51 100
BACU007459/1-238 LSPCCPCVLL PAEPPLRREG YTVQVNVNDY LDIYCPHYNS SGVGPGAGPG
bmy_03375T0/1-221 LGNRHAVYWN SSNQHLRREG YTVQVNVNDY LDIYCPHYNS SGVGPGAGPG
ENSTTRP00000015322/1-238 LGNRHAVYWN SSNQHLRREG YTVQVNVNDY LDIYCPHYNS SGVGPGAGPG
ENSBTAP00000026958/1-238 LGNRHAVYWN SSNQHLRREG YTVQVNVNDY LDIYCPHYNS SGVGPGAGPG
101 150
BACU007459/1-238 PGGGAEQYVL YMVSRAGYRT CNATQGFKRW ECNRPHAPHS PIKFSEKFQR
bmy_03375T0/1-221 PGGGAEQYVL YMVSRAGYRT CNATQGFKRW ECNRPHAPHS PIKFSEKFQR
ENSTTRP00000015322/1-238 PGGGAEQYVL YMVSRAGYRT CNASQGFKRW ECNRPHAPHS PIKFSEKFQR
ENSBTAP00000026958/1-238 PGGGAEQYVL YMVSRDGYRT CNASQGSKRW ECNRPHAPHS PIKFSEKFQR
151 200
BACU007459/1-238 YSAFSLGYEF HAGHEYYYIS ---------- ---------- --SHSGEKPV
bmy_03375T0/1-221 YSAFSLGYEF HAGHEYYYIS ---------- ---------- --SHSGEKPV
ENSTTRP00000015322/1-238 YSAFSLGYEF HAGHEYYYIS TPTHNLHWKC LRMKVFVCCA STSHSGEKPV
ENSBTAP00000026958/1-238 YSAFSLGYEF HAGHEYYYIS TPTHNLHWKC LRMKVFVCCA STSHSGEKPV
201 250
BACU007459/1-238 PTLPQFTMGP NVKINVLEDF EGENPQVPKL EKSISGTS-P KQEHLP-LAV
bmy_03375T0/1-221 PTLPQFTMGP NVKINVL--- -GESAQRPLV ATAGTAAPSP VAAHLACLSR
ENSTTRP00000015322/1-238 PTLPQFTMGP NVKINVLEDF EGENPQVPKL EKSISGTS-P KREHLP-LAV
ENSBTAP00000026958/1-238 PTLPQFTMGP HVKINVLEDF EGENPQVPKL EKSISGTS-P KREHLP-LAV
251 300
BACU007459/1-238 GIAFFLMTLL AS-------
bmy_03375T0/1-221 GHRSLPPPTY ATHRHFWRP
ENSTTRP00000015322/1-238 GIAFFLMTLL AS-------
ENSBTAP00000026958/1-238 GIAFFLMTLL AS-------