KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:30:58 2014 Check: 00 .. Name: ENSP00000378289/1-977 Len: 1233 Check: 592 Weight: 1.00 Name: ENSBTAP00000026992/1-603 Len: 1233 Check: 8136 Weight: 1.00 Name: BACU001325/1-1232 Len: 1233 Check: 3264 Weight: 1.00 Name: ENSTTRP00000011431/1-974 Len: 1233 Check: 3831 Weight: 1.00 Name: bmy_08680T0/1-978 Len: 1233 Check: 3049 Weight: 1.00 // 1 50 ENSP00000378289/1-977 MGAEEEVLVT LSGGAPWGFR LHGGAEQRKP LQVSKIRRRS QAGRAGLRER ENSBTAP00000026992/1-603 MGAEEEVLVT LSGGAPWGFR LHGGAEQRKP LQVSKIRRRS QAGRAGLRER BACU001325/1-1232 MGAEEEVLVT LSGGAPWGFR LQGGAEQRKP LQVSKIRRRS QAGRAGLRER ENSTTRP00000011431/1-974 MGAEEEVLVT LSGGAPWGFR LQGGAEQRKP LQVSKIRRRS QAGRAGLRER bmy_08680T0/1-978 MGAEEEVLVT LSGGAPWGFR LQGGAEQRKP LQVSKIRRRS QAGRAGLRER 51 100 ENSP00000378289/1-977 DQLLAINGVS CTNLSHASAM SLIDASGNQL VLTVQRLADE GPVQSPSPHE ENSBTAP00000026992/1-603 DQLLAINGVS CTSLSHASAM GLIDASGNQL VLTVRRVEDE GPVRSPSPGE BACU001325/1-1232 DQLLAVNGVS CTSLSHARAM SLIDDSGNQL VLTVRRVEDE GPVRSPSPGE ENSTTRP00000011431/1-974 DQLLAVNGVS CTSLSHARAM SLIDDSGNQL VLTVRRVEDE GPVRSPSPGE bmy_08680T0/1-978 DQLLAVNGVS CTSLSHARAM SLIDDSGNQL VLTVRRVENE GPVRSPSPGE 101 150 ENSP00000378289/1-977 LQVLSPLSPL SPEPPGAPVP QPLQPGSLRS PPDSEAYYGE TDSDADGPAT ENSBTAP00000026992/1-603 LQARSPLSPL SPEPPGAPVP QPLQPGSLLS PPDSEAYYGE TDSDADGPAT BACU001325/1-1232 LQALSPLSPL SPEPPGAPVP QPLQPGSLLS PPDSEAYYGE TDSDADGPAT ENSTTRP00000011431/1-974 LQALSPLSLL SPEPPGAPVP QPLLPGSLLS PPDSEAYYGE TDSDADGPAT bmy_08680T0/1-978 LQALSPLSPL SPEPPGAPVP QPLQPGSLLS PPDSEAYYGE TDSDADGPAT 151 200 ENSP00000378289/1-977 QEKPRRPRRR GPTRPTPPGA PPDEVYLSDS PAEPAPTIPG PPSQGDSRVS ENSBTAP00000026992/1-603 QEKPRRPRRR GPTRPTPPGA PPDEVYLSDS PAEPAPAVLG PPSQGDSRVS BACU001325/1-1232 QEKPRRPRRR GPTRPTPPGA PPDEVYLSDS PAEPAPGVLG PPSQDDSRVS ENSTTRP00000011431/1-974 QEKTRRPRRR GPTRPTPPGA PPDEVYLSDS PAEPAPGVLG PPSQDDSRVS bmy_08680T0/1-978 QEKPRRPRRR GPTRPTPPGA PPDEVYLSDS PAEPAPGVLG PPSQDDSRVS 201 250 ENSP00000378289/1-977 SPSWEDGAAL QPPPAEALLL PHGPLRPGPH LIPMVGPVPH PVAEDLTTTY ENSBTAP00000026992/1-603 SPSWEDGTTL QPPPAEALLL PHGPLRPGPN LIPMVGPVPH PVAEDLTTTY BACU001325/1-1232 SPSWEDGTTL QPPPAEALLL PHGPLRPGPH LIPMVGPVPH PVAEDLTTTY ENSTTRP00000011431/1-974 SPSWEDGTTL QPPPAEALLL PHGPLRPH-- -LPMVGLFPH PVAEDLTTTY bmy_08680T0/1-978 SPSWEDGTTL QPPPAEALLL PHGPLRPGPH LIPMVGPVPH PVAEDLTTTY 251 300 ENSP00000378289/1-977 TQKAKQAKLQ RAESLQEKSI KEAKTKCRTI ASLLTAAPNP HSKGVLMFKK ENSBTAP00000026992/1-603 TQKAKQAKLQ RAESLQERSV KEAKTKCRTI AALLTAAPNP HSKGVLMFKK BACU001325/1-1232 TQKAKQAKLQ RAESLQERSV KEAKTKCRTI ASLLTAAPNP HSKGVLMFKK ENSTTRP00000011431/1-974 TQKAKQAKLQ RAESLQERSV KEAKTKCRTI ASLLTAAPNP HSKGVLMFKK bmy_08680T0/1-978 TQKAKQAKLQ RAESLQERSV KEAKTKCRTI ASLLTAAPNP HSKGVLMFKK 301 350 ENSP00000378289/1-977 RRQRAKKYTL VSFGAAAGTG AEEEDGVPPT SESELDEEAF SDARSLTNQS ENSBTAP00000026992/1-603 RRQRAKKYTL VSFGAAAGTG AEEEDGLPPT SESELDEEAF SDARSLTNQS BACU001325/1-1232 RRQRAKKYTL VSFGAAAGTG AGEEDGVPPT SESELDEEAF SDARSLTNQS ENSTTRP00000011431/1-974 RRQRAKKYTL VSFGAAAGTG AGEEDGVPPT SESELDEEAF SDARSLTNQS bmy_08680T0/1-978 RRQRAKKYTL VSFGAAAGTG AGEEDGVPPT SESELDEEAF SDARSLTNQS 351 400 ENSP00000378289/1-977 DWDSPYLDME LARAGSRASE GQGSGLGGQL SEVSGRGVQL FEQQRQRADS ENSBTAP00000026992/1-603 DWDSPYLDME LARPSSGTAE GRG------L SEASGRGAQL FEQQRQRTAS BACU001325/1-1232 DWDSPYLDME LARPSSGAAE GQGPGLGGQL SEASGRGAQL FAQQRQRADS ENSTTRP00000011431/1-974 DWDSPYLDME LARPSSGAAE GQGPGLGGQL SEASGRGAQL FEQQRQRADS bmy_08680T0/1-978 DWDSPYLDME LARPSSGAAE GQGPGLGGQL SEASGRGAQL FAQQRQRADS 401 450 ENSP00000378289/1-977 STQELARVEP AAMLNGEGLQ SPPRAQSAPP EAAVLPPSPL PAPVASPRPF ENSBTAP00000026992/1-603 ITQQPAQEVP VATLNGQGLQ SPPRPQSAPP EAALLPSSPS PAPVASPRPF BACU001325/1-1232 STQEPAGDGP AATLNGQGLQ SPPRAQNAPP EAAVLPSSPS PAPAASPRPF ENSTTRP00000011431/1-974 STQ-PAGDGP AATLNGQGLQ SPPRAQSAPP EAAVLPSSPS PAPAASPRPF bmy_08680T0/1-978 STQEPAGDGP AATLNGQGLQ SPPRAQNAPP EAAVLPSSPS PAPAASPRPF 451 500 ENSP00000378289/1-977 QPGGGAPTPA PSIFNRSARP FTPGLQGQRP TTTSVIFRPL APKRANDSLG ENSBTAP00000026992/1-603 LPGCGTSTSA PSIFNRSARP FTPGLQGQRS GTTSVIFRPL APKRANESLG BACU001325/1-1232 LPSGGASTPA PSIFNRSARP FTPGLQGQRP GTTSVIFRPL APKRANESLG ENSTTRP00000011431/1-974 LPSSGASTPA PSIFNRSARP FTPGLQGQRP GTTSVIFRPL APKRANDSLG bmy_08680T0/1-978 LPSGGXSTPA PSIFNRSARP FTPGLQGQRP GTTSVIFRPL APKRANESLG 501 550 ENSP00000378289/1-977 GLSPAPPPFL SS-QGPTPLP SFTSGVPSHA PVSGSPSTPR SSGPVTATSS ENSBTAP00000026992/1-603 GLSPAPPPFL SPPQGTTPVP SLTSGVPSHV PVPASPSTPR PTGPVTATSS BACU001325/1-1232 GLSAVPPPFL SSPQGTTPLP SFSSGVPSHV STPGSPSTPR SSGPLTATSS ENSTTRP00000011431/1-974 GLSAVPPPFL SSPQGTTPLP SFSSGVPSHV STPGSTSTPR SSGPVTATSS bmy_08680T0/1-978 GLSAVPPPFL SSPQGTTPLP SFSSGVPSHV STPGSPSTPR SSGPVTATSS 551 600 ENSP00000378289/1-977 LYIPAPSRPV TPGGAPEPPA PPSAAAMTST ASIFLSAPLR PSARPEAPAP ENSBTAP00000026992/1-603 LYIPAPNRPV TPGGAPEAPA PASGAAMTST ASIFLSSPLR PAARPEAPAP BACU001325/1-1232 LYIPAPNRPV TPGGAPEPPA PSSGAAMTST ASIFLSAPLR PAARPEAPAP ENSTTRP00000011431/1-974 LYIPAPNRPV TPGGAPEPPA PASGAAMTST ASIFLSAPLR PAARPEAPAP bmy_08680T0/1-978 LYIPAPNRPV TPGGAPEPPA PSSGAAMTST ASIFLSAPLR PAARPEAPAP 601 650 ENSP00000378289/1-977 GPGAPEPPSA REQRISVPAA RTGILQEARR RGTRKQMFRP GKEETKNSPN ENSBTAP00000026992/1-603 SSAAPEPPS- ---------- ---------- ---------- ---------- BACU001325/1-1232 GPAAPEPSSA REKRISVPAA RTGILQEARR RGTRKQMFRP GNEETKNSPN ENSTTRP00000011431/1-974 GPAAPEPSSA REKRISVPAA RTGILQEARR RGTRKQMFRP GNEETKNSPN bmy_08680T0/1-978 GPAAPEPSSA REKRISVPAA RTGILQEARR RGTRKQMFRP GNEETKNSPN 651 700 ENSP00000378289/1-977 PELLSLVQNL DEKPRAGGAE SGPEEDALSL GAEACNFMQP VGARSYKTLP ENSBTAP00000026992/1-603 ---------- ---------- ---------- ---------- ---------- BACU001325/1-1232 PELLSLVQNL DEKPRAGGAE SCPEEDALSL GAEACNFMQP PGGRSYKTLP ENSTTRP00000011431/1-974 PELLSLVQNL DEKPRAGGAE SCPEEDALSL GAEACNFMQP PGGRSYKTLP bmy_08680T0/1-978 PELLSLVQNL DEKPRAGGAE SCPEEDALSL GAEACNFMQP PGGRSYKTLP 701 750 ENSP00000378289/1-977 HVTPKTPPPM APKTPPPMTP KTPPPVAPKP PSRGLLDGLV NGAASSAGIP ENSBTAP00000026992/1-603 ---------- ---------- ---------- ---------- ---------- BACU001325/1-1232 HVTAKTPPPM APKTPPPATP KTPPPVAPKP PSRGFLDGLV NGAALSAGIP ENSTTRP00000011431/1-974 HVTAKTPPPM APKTPPPTTP KTPPPVAPKP PSRGFLDGLV NGAAPSAGIP bmy_08680T0/1-978 HVTAKTPPPM APKTPPPTTP KTPPPVAPKP PSRGFLDGLV NGAALSAGIP 751 800 ENSP00000378289/1-977 EPPRLQGRGG ELFAKRQSRA DRYVVEGTPG PGLGPRPRSP SPTPSLPPSW ENSBTAP00000026992/1-603 ---------- ---------- ---------- ---------- ---------- BACU001325/1-1232 EPPRLQGRGG ELFAKRQSRA DRYVVE-APG PGLGPRPRSP SPTPSLPPSW ENSTTRP00000011431/1-974 EPPRLQGRGG ELFAKRQSRA DRYVVE-APG PGLGPRPRSP SPTPSLPPSW bmy_08680T0/1-978 EPPRLQGRGG ELFAKRQSRA DRYVVE-APG PGLGPRPRSP SPTPSLPPSW 801 850 ENSP00000378289/1-977 KYSPNIRAPP PIAYNPLLSP FFPQAARTLP -KAQSQGPRA TPKQGIKALD ENSBTAP00000026992/1-603 ---------- ---------- ---------- ---------- ---------- BACU001325/1-1232 KYSPNIRAPP PIAYNPLLSP FFPQAARTLP SKIQSQGPRA APKQGIKALD ENSTTRP00000011431/1-974 KYSPNIRAPP PIAYNPLLSP FFPQAARTLP SKIQSQGPRA APKQGIKALD bmy_08680T0/1-978 KYSPNIRAPP PIAYNPLLSP FFPQAARTLP SKIQSQGPRA APKQGIKALD 851 900 ENSP00000378289/1-977 FMRHQPYQLK TAMFCFDEVP PTPGPIASGS PKTARVQEIR RFSTPAPQPT ENSBTAP00000026992/1-603 ---------- ---------- ---------- ---------- ---------- BACU001325/1-1232 FMRHQPYQLK SAMFCFDEVP PTPGPTSSVP PRTARVQEIR RFSTPAPQPT ENSTTRP00000011431/1-974 FMRHQPYQLK SAMFCFDEVP PTPGPTSSVP PKTARVQEIR RFSTPAPQPT bmy_08680T0/1-978 FMRHQPYQLK SAMFCFDEVP PTPGPTSSVP PRTARVQEIR RFSTPAPQPT 901 950 ENSP00000378289/1-977 AEPLAPTVLA PRAATTLDEP IWRTELASAP VPSPAPPPEA PRGLGASPSS ENSBTAP00000026992/1-603 ---------- ---------- ---------- ---------- ---------- BACU001325/1-1232 AEPLAPTVLA PRAATTLDEP IWRAEQASAP VLSPAPPPES PRGPGASPSS ENSTTRP00000011431/1-974 AEPLAPTVLA PRAATTLDEP IWRAELASAP VLSPAPPPES PRGLGTSPSS bmy_08680T0/1-978 AEPLAPTVLA PRAATTLDEP IWRAEQASAP VLSPAPPPES PRGLGASPSS 951 1000 ENSP00000378289/1-977 CGFQ------ ---------- ---------- ---------- -------VAR ENSBTAP00000026992/1-603 ---------- ---------- ---------- ---------- ---------- BACU001325/1-1232 CGFQAPSTST MPLSETPAPN KKRKSSKLIM ELTGGGRESS GLNLGKKISV ENSTTRP00000011431/1-974 CGFQ------ ---------- ---------- ---------- -------VAR bmy_08680T0/1-978 CGFQ------ ---------- ---------- ---------- -------VAR 1001 1050 ENSP00000378289/1-977 PR-------- ---------- ---------- ---------- ---------- ENSBTAP00000026992/1-603 ---------- ---------- ---------- ---------- ---------- BACU001325/1-1232 PRDVMLEELS LLTNRGSKMF KLRQMRVEKF IYENHPDVFS DSSMDHFQKF ENSTTRP00000011431/1-974 PR-------- ---------- ---------- ---------- ---------- bmy_08680T0/1-978 PR-------- ---------- ---------- ---------- ---------- 1051 1100 ENSP00000378289/1-977 ---------- ------FSAT RTGLQA---- ---------- -HVWRPGAGH ENSBTAP00000026992/1-603 ---------- ---------- ---------- ---------- ---------- BACU001325/1-1232 LPTVGGQLGT AGQGFSYSKG SGGGQAGGSG SAGQYGSDEH HHHQGPGSGY ENSTTRP00000011431/1-974 ---------- ------FSAT RTGWQA---- ---------- -HVWRPGAGH bmy_08680T0/1-978 ---------- ------FSAT RTGLQA---- ---------- -HVWRPGAGH 1101 1150 ENSP00000378289/1-977 Q--------- ---------- ---------- ---------- ---------- ENSBTAP00000026992/1-603 ---------- ---------- ---------- ---------- ---------- BACU001325/1-1232 GDDQAGGEGK HISVFKTYIS PWERAMGVDS QQKVELGINL LAHRAKGDLP ENSTTRP00000011431/1-974 H--------- ---------- ---------- ---------- ---------- bmy_08680T0/1-978 H--------- ---------- ---------- ---------- ---------- 1151 1200 ENSP00000378289/1-977 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026992/1-603 ---------- ---------- ---------- ---------- ---------- BACU001325/1-1232 QYKSFNRTAM PYGGYEKASK RMTFQMPKFD LGPLLSEPLV LYNQNLSNRP ENSTTRP00000011431/1-974 ---------- ---------- ---------- ---------- ---------- bmy_08680T0/1-978 ---------- ---------- ---------- ---------- ---------- 1201 1250 ENSP00000378289/1-977 ---------- ---------- ---------- --- ENSBTAP00000026992/1-603 ---------- ---------- ---------- --- BACU001325/1-1232 SFNRTPIPWL SSGEPVDYNV DIGIPLDGET EEL ENSTTRP00000011431/1-974 ---------- ---------- ---------- --- bmy_08680T0/1-978 ---------- ---------- ---------- ---