KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:31:02 2014 Check: 00 .. Name: BACU004255/1-144 Len: 497 Check: 2173 Weight: 1.00 Name: ENSP00000236137/1-497 Len: 497 Check: 3328 Weight: 1.00 Name: ENSBTAP00000027006/1-496 Len: 497 Check: 8352 Weight: 1.00 Name: bmy_03697T0/1-433 Len: 497 Check: 5716 Weight: 1.00 Name: ENSTTRP00000003789/1-495 Len: 497 Check: 4204 Weight: 1.00 // 1 50 BACU004255/1-144 ---------- ---------- ---------- ---------- ---------- ENSP00000236137/1-497 MDVPGPVSRR AAAAAATVLL RTARVRRECW FLPTALLCAY GFFASLRPSE ENSBTAP00000027006/1-496 MVVPGPVSRR -AAAAATMLL RTARVPRECW FLPTALLCAY GFFASLRPSE bmy_03697T0/1-433 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003789/1-495 MDVPGPVTRR -AAAAATMLL RTARVPRECW FVPTALLCAY GFFASLRPSE 51 100 BACU004255/1-144 ---------- ---------- ---------- ---------- --MFLRFSDV ENSP00000236137/1-497 PFLTPYLLGP DKNLTEREVF NEIYPVWTYS YLVLLFPVFL ATDYLRYKPV ENSBTAP00000027006/1-496 PFLTPYLLGP DKNLTEREVF NEIYPVWTYS YLVLLFPVFL ATDYLRYKPV bmy_03697T0/1-433 ---------- ----MALEVL NEIYPVWTYS YLVLLFPVFL ATDFLRYKPV ENSTTRP00000003789/1-495 PFLTPY-LGP DKNLTKREVF NEIYPVWTYS YLVLLFPVFL ATDFLRYKPV 101 150 BACU004255/1-144 CM-------- ---------- ---------- ---------- ---------- ENSP00000236137/1-497 VLLQGLSLIV TWFMLLYAQG LLAIQFLEFF YGIATATEIA YYSYIYSVVD ENSBTAP00000027006/1-496 VLLQGLSLIV TWFMLLYAQG LLAIQFLEFF YGIATATEIA YYSYIYSVVD bmy_03697T0/1-433 VLLQGLSLIV TWFMLLYAQG LLAIQFLEFF YGIATATEIA YYSYIYSVVD ENSTTRP00000003789/1-495 VLLQGLSLIV TWFMLLYAQG LLAIQFLEFF YGIATATEIA YYSYIYSVVD 151 200 BACU004255/1-144 -----RFTSF S--------- ---------- ---------- ---------- ENSP00000236137/1-497 LGMYQKVTSY CRSATLVGFT VGSVLGQILV SVAGWSLFSL NVISLTCVSV ENSBTAP00000027006/1-496 LSMYQKVTSY CRSATLVGFT VGSVLGQILV SVASWSLFSL NVISLTCVSV bmy_03697T0/1-433 LSMYQKVTSY CRSATLVGFT VGSLLGQILV SVAGWSLFSL NVISLTCVSV ENSTTRP00000003789/1-495 LSMYQKVTSY CRSATLVGFT VGSVLGQILV SVAGWSLFSL NVISLTCVSV 201 250 BACU004255/1-144 ---------- --NKIFFTWL ------GREL TVESTGYSSH YPGSNS---- ENSP00000236137/1-497 AFAVAWFLPM PQKSLFFHHI PSTCQRVNGI KVQNGGIVTD TPASNHLPGW ENSBTAP00000027006/1-496 AFAVAWFLPM PQKSLFFHHV PPSCQGTNGI KIQNGGVATD TAASNHRPQW bmy_03697T0/1-433 AFAVAWFLPM PQKSLFFHHV PPSCQGANGI KVRSGGIATD TSASNHLPQC ENSTTRP00000003789/1-495 AFAVAWFLPM PQKSLFFHHV PPSCQGANGV KVHNGGIATD TSASNRLPQW 251 300 BACU004255/1-144 ---------- ---------- ---------- ---------- ---------- ENSP00000236137/1-497 EDIESKIPLN MEEPPVEEPE PKPDRLLVLK VLWNDFLMCY SSRPLLCWSV ENSBTAP00000027006/1-496 EDVESKIPLN REEPPVEEQE SKPDRLLVLK VLWNDFLVCY SSRPLLCWSV bmy_03697T0/1-433 EDVESKIPLN TEEPPMEEQE SKPDRLLVLK VLWNDFLVCY SSRPLLCWSV ENSTTRP00000003789/1-495 EDVESKIPLN TEEPPMEGQE SKPDRLLVLK VLWNDFLVCY SSRPLLCWSV 301 350 BACU004255/1-144 ------C--- ---------- ---------- ---------- ---------- ENSP00000236137/1-497 WWALSTCGYF QVVNYTQGLW EKVMPSRYAA IYNGGVEAVS TLLGAVAVFA ENSBTAP00000027006/1-496 WWALSTCGYF QVVNYAQGLW EQVMPSRHAA IYNGGVEAVS TLLGAVAVFA bmy_03697T0/1-433 WWALSTCGYF QVVNYAQGLW EQVMPSRHAA IYNGGVEAVS TLLGAVAVFA ENSTTRP00000003789/1-495 WWALSTCGYF QVVNYAQGLW EQVMPSRHAA IYNGGVEAVS TLLGAVAVFA 351 400 BACU004255/1-144 ---------- ---------- ---------- ---------- --------LC ENSP00000236137/1-497 VGYIKISWST WGEMTLSLFS LLIAAAVYIM DTVGNIWVCY ASYVVFRIIY ENSBTAP00000027006/1-496 VGYIKISWST WGELTLSLFS LLIAAAVYIM DTVGNIWVCY ASYVVFRIIY bmy_03697T0/1-433 VGYXKISWST WGELTLSLFS LLIAAAVYIM DTVGNIWVCY ASYVVFRIIY ENSTTRP00000003789/1-495 VGYIKLSWST WGELTLSLFS LLIAAAVYIM DTVGNIWVCY ASYVVFRIIY 401 450 BACU004255/1-144 VLFIYFLSFQ IAANLSMERY ALVFGVNTFI ALALQTLLTL IVVDASGLGL ENSP00000236137/1-497 MLLITIATFQ IAANLSMERY ALVFGVNTFI ALALQTLLTL IVVDASGLGL ENSBTAP00000027006/1-496 MLLITIATFQ IAANLSMERY ALVFGVNTFI ALALQTLLTL IVVDASGLGL bmy_03697T0/1-433 MLLITIATFQ IAANLSMERY ALVFGVNTFI ALALQTLLTL IVVDASGLGL ENSTTRP00000003789/1-495 MLLITIATFQ IAANLSMERY ALVFGVNTFI ALALQTLLTL IVVDASGLGL 451 500 BACU004255/1-144 EITTQFFIYA GYFALIAVVF LSNGAVNILK KYRKPEDPES STQVTTS ENSP00000236137/1-497 EITTQFLIYA SYFALIAVVF LASGAVSVMK KCRKLEDPQS SSQVTTS ENSBTAP00000027006/1-496 EITTQFFIYA GYFALIAVVF LANGTVSIMK KYRKQEDPES SSQETPS bmy_03697T0/1-433 EITTQFFIYA GYFALIAVVF LSNGAVNILK KYGKPEDPES STQVSTS ENSTTRP00000003789/1-495 EITPQFFIYA GYFALIAVVF LTNGAVNILK KYRKPQDPES SSQVTTS