KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:31:03 2014 Check: 00 .. Name: ENSP00000226574/1-969 Len: 997 Check: 7271 Weight: 1.00 Name: ENSTTRP00000010297/1-964 Len: 997 Check: 6061 Weight: 1.00 Name: ENSBTAP00000027016/1-969 Len: 997 Check: 4697 Weight: 1.00 Name: BACU004537/1-854 Len: 997 Check: 7486 Weight: 1.00 Name: bmy_02671T0/1-893 Len: 997 Check: 8290 Weight: 1.00 // 1 50 ENSP00000226574/1-969 MAEDDPYLGR PEQMFHLDPS LTHTIFNPEV FQPQMALPTA DGPYLQILEQ ENSTTRP00000010297/1-964 MAEDDPYLGG HEQMFHLDP- LNHTIFNPEL FPPEMPLPTA DGPYLQILEQ ENSBTAP00000027016/1-969 MAEDDPYLGG HEQMFHLDP- LNHTMFSPEL FQPEMPLPTA DGPYLQILEQ BACU004537/1-854 ---------- ---------- ---------- ---------- ---------- bmy_02671T0/1-893 --MEDSDLGC TLEEW----- MVQHREEKEG TPPGVSSSSL HEEKLSRKEL 51 100 ENSP00000226574/1-969 PKQRGFRFRY VCEGPSHGGL PGASSEKNKK SYPQVKICNY VGPAKVIVQL ENSTTRP00000010297/1-964 PKQRGFRFRY VCEGPSHGGL PGASSEKNKK SYPQVKICNY VGPAKVIVQL ENSBTAP00000027016/1-969 PKQRGFRFRY VCEGPSHGGL PGASSEKNKK SYPQVKICNY VGPAKVIVQL BACU004537/1-854 ---------- ---------- ---------- ---------- ---------- bmy_02671T0/1-893 LHVSRLIFML ---------- ---------- TLPSAKICNY VGPAKVIVQL 101 150 ENSP00000226574/1-969 VTNGKNIHLH AHSLVGKHCE DGICTVTAGP KDMVVGFANL GILHVTKKKV ENSTTRP00000010297/1-964 VTNGKNIHLH AHSLVGKHCE DGICTVTAGP KDMVVGFANL GILHVTKKKV ENSBTAP00000027016/1-969 VTNGKNIHLH AHSLVGKHCE DGVCTVTAGP KDMVVGFANL GILHVTKKKV BACU004537/1-854 ---------- ---------- ---------- ------FANL GILHVTKKKV bmy_02671T0/1-893 VTNGKNIHLH AHSLVGKHCE DGICTVTAGP KDMVVGFANL GILHVTKKKV 151 200 ENSP00000226574/1-969 FETLEARMTE ACIRGYNPGL LVHPDLAYLQ AEGGGDRQLG DREKELIRQA ENSTTRP00000010297/1-964 FETLEARMTD ACIRGYNPGL LVHPDLAYLQ AEGGGDRQLT DREKEIIRQA ENSBTAP00000027016/1-969 FETLEARMTD ACIRGYNPGL LVHPDLAYLQ AEGGGDRQLT DREKEIIRQA BACU004537/1-854 FETLEARMTD ACIRGYNPGL LVHPDLAYLQ AEGGGDRQLT DREKEIIRQA bmy_02671T0/1-893 FETLEARMTD ACIRGYNPGL LVHPDLAYLQ AEGGGDRQLT E--------- 201 250 ENSP00000226574/1-969 ALQQTKEMDL SVVRLMFTAF LPDSTGSFTR RLEPVVSDAI YDSKAPNASN ENSTTRP00000010297/1-964 ALQQTKEMDL SVVRLMFTAF LPDSTGSFTR RLEPVVSDAI YDSKAPNASN ENSBTAP00000027016/1-969 ALQQTKEMDL SVVRLMFTAF LPDSTGSFTR RLEPVVSDAI YDSKAPNASN BACU004537/1-854 ALQQTKEMDL SVVRLMFTAF LPDSTGSFTR RLEPVVSDAI YDSKAPNASN bmy_02671T0/1-893 ---------- ---------- ---------- ---------- ----APNASN 251 300 ENSP00000226574/1-969 LKIVRMDRTA GCVTGGEEIY LLCDKVQKDD IQIRFYEEEE NGGVWEGFGD ENSTTRP00000010297/1-964 LKIVRMDRTA GCVTGGEEIY LLCDKVQKDD IQIRFYEEEE NGGIWEGFGD ENSBTAP00000027016/1-969 LKIVRMDRTA GCVTGGEEIY LLCDKVQKDD IQIRFYEEEE NGGIWEGFGD BACU004537/1-854 LKIVRMDRTA GCVTGGEEIY LLCDKVQKDD IQIRFYEEEE NGGIWEGFGD bmy_02671T0/1-893 LKIVRMDRTA GCVTGGEEIY LLCDKVQKDD IQIRFYEEEE NGGIWEGFGD 301 350 ENSP00000226574/1-969 FSPTDVHRQF AIVFKTPKYK DINITKPASV FVQLRRKSDL ETSEPKPFLY ENSTTRP00000010297/1-964 FSPTDVHRQF AIVFKTPKYK DVNITKPASV FVQLRRKSDL ETSEPKPFLY ENSBTAP00000027016/1-969 FSPTDVHRQF AIVFKTPKYK DVNITKPASV FVQLRRKSDL ETSEPKPFLY BACU004537/1-854 FSPTDVHRQF AIVFKTPKYK DINITKPASV FVQLRRKSDL ETSEPKPFLY bmy_02671T0/1-893 FSPTDVHRQF AIVFKTPKYK DINITKPASV FVQLRRKSDL ETSEPKPFLY 351 400 ENSP00000226574/1-969 YPEIKD---- ---------- ------KEEV QRKRQKLMPN FSDSFGGGSG ENSTTRP00000010297/1-964 YPEIKD---- ---------- ------KEEV QRKRQKLMPN FSDSFGGGSG ENSBTAP00000027016/1-969 YPEIKD---- ---------- ------KEEV QRKRQKLMPN FSDSFGGGSG BACU004537/1-854 YPEIKDTEET IWAADNESEE ECKNPNKEEV QRKRQKLMPN FSDSFGGGSG bmy_02671T0/1-893 YPEIKD---- ---------- ------KEEV QRKRQKLMPN FSDSFGGGSG 401 450 ENSP00000226574/1-969 AGAGGGGMFG SGGGGGGTGS TGPGYSFPHY GFPTYGGITF HPGTTKSNAG ENSTTRP00000010297/1-964 AGAGGGGMFG SSGGGGSAGS TGPGYGFPHY GFPTYGGITF HPGTXXXXXG ENSBTAP00000027016/1-969 AGAGGGGMFG SGGGGGGAGS TGPGYGFPHY GFPTYGGITF HTGTTKSNAG BACU004537/1-854 AGAGGGGMFG SSGGGGGAGS TGPGYGFPHY GFPTYGGITF HPGTAKSNAG bmy_02671T0/1-893 AGAGGGGMFG SSGGGGGAGS TGPGYGFPHY GFPTYGGITF HPGTAKSNAG 451 500 ENSP00000226574/1-969 MKHGTMDTES KKDPEGCDKS DDKNTVNLFG KVIETTEQDQ EPSEATVGNG ENSTTRP00000010297/1-964 MKHGTIDTSS KNDPEGYDKS DDREAINLSG QAAETTKQDK ESCK---RGA ENSBTAP00000027016/1-969 MKHGTIDTPS KNDPESCGKS DDREVVNLSE QVTETTEQDG GSCK---GGS BACU004537/1-854 MKHGTIDTPS TNDPEGYDES DDREAINLCG QAAESTEQDK ESCK---RGD bmy_02671T0/1-893 MKHGTIDTPS KNDPEGYDKS DDREAINLSG QAAESTKQDK ESCR---RGD 501 550 ENSP00000226574/1-969 EVTLTYATGT KEESAGVQDN LFLEKAMQLA KRHANALFDY AVTGDVKMLL ENSTTRP00000010297/1-964 EADLAYSVGV KEEKHSSQDN LFLEKAVQLA KQHANALFDY AVTGDVKMLL ENSBTAP00000027016/1-969 AANLTCSVGV KEENRSFQDN LFLEKAMQLA KQHANALFDY AVTGDVKMLL BACU004537/1-854 EADPAYSVGV KEENRSSQDD LFLEKAMQLA KRHANALFDY AVTGDVKVLL bmy_02671T0/1-893 EADLAYSVGV QEENRSSQDN LFLEKAMQLA KQHANALFDY AVTGDVKMLL 551 600 ENSP00000226574/1-969 AVQRHLTAVQ DENGDSVLHL AIIHLHSQLV RDLLEVTSGL ISDDIINMRN ENSTTRP00000010297/1-964 AVQRHLTAVQ DENGDSVLHL AIIHLHAQLV RDLLEVTSGL ISEEIINMRN ENSBTAP00000027016/1-969 AVQRHLTAVQ DENGDSVLHL AIIHLHNQLV RDLLEVTSGL ISDEIINMRN BACU004537/1-854 AAQRHLTAVQ DESGDSVLHL AIIHLHAQLV RDLLEVTSGL ISDEIINMRN bmy_02671T0/1-893 AVQRHLTAVQ DENGDSVLHL AIIHLHAQLV RDLLEVTSGL ISDEIINMRN 601 650 ENSP00000226574/1-969 DLYQTPLHLA VITKQEDVVE DLLRAGADLS LLDRLGNSVL HLAAKEGHDK ENSTTRP00000010297/1-964 DLYQTPLHLA VITSQEAVVE DLLRAGADLT LLDRSGNSAL HLAAKGGHDE ENSBTAP00000027016/1-969 DLYQTPLHLA VITRQEAVVE DLLRAGADLS LLDRLGNSVL HLAAKEGHDK BACU004537/1-854 DLYQTPLHLA VITKQEAVVE DLLRAGADLS LLDRLGNSVL HLAAKEGHDT bmy_02671T0/1-893 DLYQTPLHLA VITKQEAVVE DLLRAGADLS LLDRLGNSVL HLAAKEGHDK 651 700 ENSP00000226574/1-969 VLSILLKHKK AALLLDHPNG DGLNAIHLAM MSNSLPCLLL LVAAGADVNA ENSTTRP00000010297/1-964 ILSILLKHKK AAQLINHPNG EGLNAIHEAM MSNSLPCLLL LVGAGADVNA ENSBTAP00000027016/1-969 ILGILLKHKK AAQLIDHPNG EGLNAIHVAM MSNSLPCLLL LMAAGADVNA BACU004537/1-854 ILSILLKHKK AAQLINHPNG EGLNAIHVAM ASNSLPCLLL LMAAGADVNA bmy_02671T0/1-893 ILSILLKHKK AAQLINHPNG EGLNAIHVAM VTNSLPCLLL LLAAGADVNA 701 750 ENSP00000226574/1-969 QEQKSGRTAL HLAVEHDNIS LAGCLLLEGD AHVDSTTYDG TTPLHIAAGR ENSTTRP00000010297/1-964 QERKSGRTAL HLAVEHDNIS LAGCLLLEGD AHVDSTTYDG TTPLHIAAGR ENSBTAP00000027016/1-969 QERKSGRTAL HLAVEHDNVS LAGCLLLEGD AHVDSTTYDG TTPLHIAAGR BACU004537/1-854 QERKSGRTAL HLAVEHDNIS LAGCLLLEGD AHVDSTTYDG TTPLHIAAGR bmy_02671T0/1-893 QERKSGRTAL HLAVEHDNIS LAGCLLLEGD AHVDSTTYDG TTPLHIAAGR 751 800 ENSP00000226574/1-969 GSTRLAALLK AAGADPLVEN FEPLYDLDDS WENAGEDEGV VPGTTPLDMA ENSTTRP00000010297/1-964 GSTRLAALLK AAGADPLVEN FEPLYDLDDS WDEDGEDEGV LPGTTPLDMA ENSBTAP00000027016/1-969 GSTRLAALLK AAGADPLVEN FEPLYDLDDS WDEDGEDEGV VPGTTPLDMA BACU004537/1-854 GSTRLAALLK AAGADPLVEN FEPLYDLDDS WD---EDEGV PPGTTPLDMA bmy_02671T0/1-893 GSTRLAALLK AAGADPLVEN FEPLYDLDDS WDEDGEDEGV LPGTTPLDMA 801 850 ENSP00000226574/1-969 TSWQVFDILN GKPYEPEFTS DDLLAQGDMK QLAEDVKLQL YKLLEIPDPD ENSTTRP00000010297/1-964 TSWQXXXXXX XXXXXXXXXX XXXXXXXDMK QLTEDAKLQL YKLLEIPDPD ENSBTAP00000027016/1-969 SSWQVFDILN GKPYEPEFTS DDLLAQGDMK QLTEDAKLQL YKLLEIPDPD BACU004537/1-854 TSWQVFDILN GKPYEPEFTS DDLLAQGDMK QLTEDAKLQL YKLLEIPDPD bmy_02671T0/1-893 TSWQVFDILN GKPYEPEFTS DDLLAQGDMK QLTEDAKLQL YKLLEIPDPD 851 900 ENSP00000226574/1-969 KNWATLAQKL GLGILNNAFR LSPAPSKTLM DNYEVSGGTV RELVEALRQM ENSTTRP00000010297/1-964 KNWATLAQKL GLGILNNAFR LSPAPSRTLM DNYEVSGGTI KELVEALRQM ENSBTAP00000027016/1-969 KNWATLAQKL GLGILNNAFR LSPAPSKTLM DNYEVSGGTI KELVEALRQM BACU004537/1-854 KNWATLAQKL GLGILNNAFR LSPAPSKTLM DNYEVSGGTI KELVEALRQM bmy_02671T0/1-893 KNWATLAQKL GLGILNNAFR LSPAPSKTLM DNYEVSGGTI KELVEALRQM 901 950 ENSP00000226574/1-969 GYTEAIEVIQ --------AA SSPVKTTSQA HSLPLSPAST RQQIDELRDS ENSTTRP00000010297/1-964 GYTEAIEVIQ --------AA SSPVEAAPQA HSLPFSPAST GQQIDEFRD- ENSBTAP00000027016/1-969 GYTEAIDVIQ AAFCT---AD TSPAKTTSQA HSLPFAPAST RPQIDELRD- BACU004537/1-854 GYTEAIEVIQ AAFCTSGSAA TSPVETTSQA HSLPFSPAST GQQIDEFRD- bmy_02671T0/1-893 GYTEAIEVIQ AAFCTSGSAA TSPVETTSQA HSLPFSPAST GQQIDEFRD- 951 1000 ENSP00000226574/1-969 DSVCDSGVET SFRKLSFTES LTSGASLLTL NKMPHDYGQE GPLEGKI ENSTTRP00000010297/1-964 DSVCDSGVET SFCKLSFTES LTSGSSLLTI NKVPHDYGQE GPLEGKI ENSBTAP00000027016/1-969 DSICDSGVET SFRKLSFTES LTSGTSLLTL NKVPHDYGQE GPIEGKI BACU004537/1-854 DSVCDSGVET SFRKLSFTES LTSGSSLLTI NKVPHDYGQE GPLEGKI bmy_02671T0/1-893 DSICDSGVET SFRKLSFTES LTSGSSLLTI NKVPHDYGQE GPLEGKI