KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:31:04 2014 Check: 00 .. Name: ENSP00000311344/1-667 Len: 750 Check: 4613 Weight: 1.00 Name: ENSBTAP00000027023/1-695 Len: 750 Check: 7231 Weight: 1.00 Name: ENSTTRP00000009942/1-664 Len: 750 Check: 4091 Weight: 1.00 Name: bmy_11668T0/1-723 Len: 750 Check: 5609 Weight: 1.00 Name: BACU004571/1-666 Len: 750 Check: 8126 Weight: 1.00 // 1 50 ENSP00000311344/1-667 ---------- ---------- ---------- ----MAGASE LGTGPGAAGG ENSBTAP00000027023/1-695 ---------- ---------- ---------- ----MAGAAG PATGSGAAGG ENSTTRP00000009942/1-664 ---------- ---------- ---------- ----MAGVAG TRMGQGAAGG bmy_11668T0/1-723 MGLSPASPGA GRGLGTGRGL GAKRAAATKR RRKNMAGVVG PGTGQGAAGG BACU004571/1-666 ---------- ---------- ---------- ----MAGVAG SGTGQGAAGG 51 100 ENSP00000311344/1-667 DGDDSLYPIA VLIDELRNED VQLRLNSIKK LSTIALALGV ERTRSELLPF ENSBTAP00000027023/1-695 DGDDSLYPIA VLIDELRNED VQLRLNSIKK LSTIALALGV ERTRTELLPF ENSTTRP00000009942/1-664 DGDDSLYPIA VLIDELRNED VQLRLNSIKK LSTIALALGV ERTRTELLPF bmy_11668T0/1-723 DGDDSLYPIA VLIDELRNED VQLRLNSIKK LSTIALALGV ERTRTELLPF BACU004571/1-666 DGDDSLYPIA VLIDELRNED VQLRLNSIKK LSTIALALGV ERTRTELLPF 101 150 ENSP00000311344/1-667 LTDTIYDEDE VLLALAEQLG NFTGLVGGPD FAHCLLPPLE NLATVEETVV ENSBTAP00000027023/1-695 LTDTIYDEDE VLLALAEQLG NFTGLVGGPD FAHCLLPPLE SLATVEETVV ENSTTRP00000009942/1-664 LTDTIYDEDE VLLALAEQLG NFTGLVGGPD FAHCLLPPLE SLATVEETVV bmy_11668T0/1-723 LTDTIYDEDE VLLALAEQLG NFTGLVGGPD FAHCLLPPLE SLATVEETVV BACU004571/1-666 LTDTIYDEDE VLLTLAEQLG NFTGLVGGPD FAHCLLPPLE SLATVEETVV 151 200 ENSP00000311344/1-667 RDKAVESLRQ ISQEHTPVAL EAYFVPLVKR LASGDWFTSR TSACGLFSVC ENSBTAP00000027023/1-695 RDKAVESLRQ ISQEHTPVAL EAHFVPLVKR LASGDWFTSR TSACGLFSVC ENSTTRP00000009942/1-664 RDKAVESLRQ ISQEHTPVAL EAHFVPLVKR LASGDWFTSR TSACGLFSVC bmy_11668T0/1-723 RDKAVESLRQ ISQEHTPVAL EAHFVPLVKR LASGDWFTSR TSACGLFSVC BACU004571/1-666 RDKAVESLRQ ISQEHTPVAL EAHFVPLVKR LASGDWFTSR TSACGLFSVC 201 250 ENSP00000311344/1-667 YPRASNAVKA EIRQQFRSLC SDDTPMVRRA AASKLGEFAK VLELDSVKSE ENSBTAP00000027023/1-695 YPRASVAVKG EIRQYFRSLC SDDTPMVRRA AASKLGEFAK VLELDSVKSE ENSTTRP00000009942/1-664 YPRASNAVKA EIRQHFRSLC SDDTPMVRRA AASKLGEFAK VLELDSVKSE bmy_11668T0/1-723 YPRASNAVKA EIRQHFRSLC SDDTPMVRRA AASKLGEFAK VLELDGVKSE BACU004571/1-666 YPRASNAVKA EIRQHFRSLC SDDTPMVRRA AASKLGEFAK VLELDSVKSE 251 300 ENSP00000311344/1-667 IVPLFTSLAS DEQDSVRLLA VEACVSIAQL LSQDDLETLV MPTLRQAAED ENSBTAP00000027023/1-695 IVPLFTNLAS DEQDSVRLLA VEACVSIAQL LSQEDIEALV MPTLRQAAED ENSTTRP00000009942/1-664 IVPLFTNLAS DEQDSVRLLA VEACVNIAQL LSEDDLEALV MPTLGQAAED bmy_11668T0/1-723 IVPLFTNLAS DEQDSVRLLA VEACVSIAQL LSEDDLEALV MPTLRQAAED BACU004571/1-666 IVPLFTNLAS DEQDSVRLLA VEACVSIAQL LSEDDLEALV MPTLRQAAED 301 350 ENSP00000311344/1-667 KSWRVRYMVA DRFSELQKAM GPKITLNDLI PAFQNLLKDC EAEVRAAAAH ENSBTAP00000027023/1-695 KSWRVRYMVA DKFSELQKAV GPKITLNDLI PAFQNLLKDC EAEVRAAAAH ENSTTRP00000009942/1-664 KSWRVRYMVA DKFSELQKAV GPKITLNDLI PAFQNLLKDC EAEVRAAAAH bmy_11668T0/1-723 KSWRVRYMVA DKFSELQKAV GPKITLNDLI PAFQNLLKDC EAEVRAAAAH BACU004571/1-666 KSWRVRYMVA DKFSELQKAV GPKITLNDLI PAFQNLLKDC EAEVRAAAAH 351 400 ENSP00000311344/1-667 KVKELGENLP IEDRETIIMN QILPYIKELV SDTNQHVKSA LASVIMGLST ENSBTAP00000027023/1-695 KILELCENLP MEGRETIIMN QILPYIKELV SDTNQHVKSA LASVIMGLST ENSTTRP00000009942/1-664 KVKELCENLP MEGRETIIMN QILPYIKELV SDTNQHVKSA LASVIMGLST bmy_11668T0/1-723 KVKELCENLP MEGRETIIMN QILPYIKELV SDTNQHVKSA LASVIMGLST BACU004571/1-666 KVKELCENLP MEGRETIIMN QILPYIKELV SDTNQHVKSA LASVIMGLST 401 450 ENSP00000311344/1-667 ILGKENTIEH LLPLFLAQLK DECPDVRLNI ISNLDCVNEV IGIRQLSQSL ENSBTAP00000027023/1-695 ILGKENTIEH LLPLFLAQLK DECPEVRLNI ISNLDCVNEV IGIRQLSQSL ENSTTRP00000009942/1-664 ILGKGNTIEH LLPLFLAQLK DECPEVRLNI ISNLDCVNEV IGVRQLSQSL bmy_11668T0/1-723 ILGKGNTIEH LLPLFLAQLK DECPEVRLNI ISNLDCVNEV IGIRQLSQSL BACU004571/1-666 ILGKGNTIEH LLPLFLAQLK DECPEVRLNI ISNLDCVNEV IGIRQLSQSL 451 500 ENSP00000311344/1-667 LPAIVELAED AKWRVRLAII EYMPLLAGQL GVEFFDEKLN SLCMAWLVDH ENSBTAP00000027023/1-695 LPAIVELAED AKWRVRLAII EYMPLLAGQL GVEFFDEKLN SLCMAWLVDH ENSTTRP00000009942/1-664 LPAIVELAED AKWRVRLAII EYMPLLAGQL GVEFFDEKLN SLCMAWLVDH bmy_11668T0/1-723 LPAIVELAED AKWRVRLAII EYMPLLAGQL GVEFFDEKLN SLCMAWLVDH BACU004571/1-666 LPAIVELAED AKWRVRLAII EYMPLLAGQL GVEFFDEKLN SLCMAWLVDH 501 550 ENSP00000311344/1-667 VYAIREAATN NLMKLVQKFG TEWAQNTIVP KVLVMANDPN YLHRMTTLFC ENSBTAP00000027023/1-695 VYAIREAATN NLMKLVQKFG TEWAQNTIVP KVLVMANDPN YLHRMTTLFC ENSTTRP00000009942/1-664 VYAIREAATN GLVKLVQKFG KEWAQNTIVP KVLVMANDPN YLHRMTTLFC bmy_11668T0/1-723 VYAIREAATN NLMKLVQKFG KEWAQNTIVP KVLVMANDPN YLHRMTTLFC BACU004571/1-666 VYAIREAATN NLMKLVQKFG KEWAQNTIVP KVLVMANDPN YLHRMTTLFC 551 600 ENSP00000311344/1-667 INALSEACGQ EITTKQMLPI VLKMAGDQVA NVRFNVAKSL QKIGPILDTN ENSBTAP00000027023/1-695 INALSEACGQ EITTKQMLPI VLKMAGDQVA NVRFNVAKSL QKIGPILDTD ENSTTRP00000009942/1-664 INALSEACGQ EITTKQMLPV VLKMARDQVA NVRFNVAKSL QKIGPVLDTN bmy_11668T0/1-723 INALSEACGQ EITTKQMLPV VLKMARDQVA NVRFNVAKSL QKIGPILDTD BACU004571/1-666 INALSEVCGQ EITTKQMLPV VLKMARDQVA NVRFNVAKSL QKIGPILDTD 601 650 ENSP00000311344/1-667 ALQGEVKPVL QKLGQDEDMD VKYFAQEAIS VVAQRLRKLE FPVKDSGEPS ENSBTAP00000027023/1-695 ALQEEVKPVL QKLGQDEDMD VKYFAQEAIS AMAQRLRKLD FPVKDSEEPS ENSTTRP00000009942/1-664 ALQEEVKPVL QKLGQDEDVD VKYFAQEAIS VVAQRLRKLD FPVKDSGEPS bmy_11668T0/1-723 ALQEEVKPVL QKLGQDEDVD VKYFAQEAIS VVAQRLRKLD FPVKDSEEPS BACU004571/1-666 AL-EEVKPVL QKLGQDEDVD VKYFAQEAIS VVAQRLRKLD FPVKDSEEPS 651 700 ENSP00000311344/1-667 VPRADKNHFP RPTVPGEDMG ---------- ---------- -------KGP ENSBTAP00000027023/1-695 TPGPDKNHFL RPREPGEDTG KAQRDRVARV ASEEAVEADQ FRGPGAAKGP ENSTTRP00000009942/1-664 TPGADKNHFL RPR---EDTG ---------- ---------- -------KGP bmy_11668T0/1-723 APGADKNHLL RPRGPGEDTG ---------- ---------- -------KGP BACU004571/1-666 APGADKNHFL RPRGPGEDTG ---------- ---------- -------KGP 701 750 ENSP00000311344/1-667 VYQLRGDTRD TLAQLGIAEL VHF------- SQSTD----- ---------- ENSBTAP00000027023/1-695 AYQLHVNTRD TFPQLDTAEI VLFL------ PKYRL----- ---------- ENSTTRP00000009942/1-664 AYQRHVNTRD TLAQLEIAEL VHF------- PQSRD----- ---------- bmy_11668T0/1-723 AYRLHVNTRD TLAQLEIAEL VHLTKVSSEE PGLQDNKANG YYTVVYTLLT BACU004571/1-666 AYRLHGNTRD TLARLEIAEL VHF------- PQSRD----- ----------