KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:31:06 2014 Check: 00 .. Name: ENSP00000391592/1-624 Len: 691 Check: 4636 Weight: 1.00 Name: ENSBTAP00000027046/1-593 Len: 691 Check: 4432 Weight: 1.00 Name: bmy_11476T0/1-660 Len: 691 Check: 2591 Weight: 1.00 Name: BACU003066/1-595 Len: 691 Check: 7355 Weight: 1.00 // 1 50 ENSP00000391592/1-624 MVR------- ---------- ---------- ---------- ---------- ENSBTAP00000027046/1-593 MVR------- ---------- ---------- ---------- ---------- bmy_11476T0/1-660 AWRAASRGKW LSSECSSLPW ATAQLRHGLS PAPCGHLPVT PYPSREMLSH BACU003066/1-595 MVR------- ---------- ---------- ---------- ---------- 51 100 ENSP00000391592/1-624 -WFHRDLSGL DAETLLKGRG VHGSFLARPS RKNQGDFSLS VRVGDQVTHI ENSBTAP00000027046/1-593 -WFHRDLSGL DAETLLKGRG VHGSFLARPS RKNQGDFSLS VRVGDQVTHI bmy_11476T0/1-660 GWFHRDLSGL DAETLLKGRG VNGSFLARPS RKNQGDFSLS VRVGDQVTHI BACU003066/1-595 -WFHRDLSGL DAETLLKGRG VNGSFLARPS RKNQGDFSLS VRVGDQVTHI 101 150 ENSP00000391592/1-624 RIQNSGDFYD LYGGEKFATL TELVEYYTQQ QGVLQDRDGT IIHLKYPLNC ENSBTAP00000027046/1-593 RIQNSGDFYD LYGGEKFATL TELVEYYTQQ QGVLQDRDGT IIHLKYPLNC bmy_11476T0/1-660 RIQNSGDFYD LYGGEKFATL TELVEYYTQQ QGVLQDRDGT IIHLKYPLNC BACU003066/1-595 RIQNSGDFYD LYGGEKFATL TELVEFYTQQ QGILQDRDGT VIHLKYPLNC 151 200 ENSP00000391592/1-624 SDPTSERWYH GHMSGGQAET LLQAKGEPWT FLVRESLSQP GDFVLSVLSD ENSBTAP00000027046/1-593 SDPTSERWYH GHMSGGQAET LLQAKGEPWT FLVRESLSQP GDFVLSVLSD bmy_11476T0/1-660 SDPTSERWYH GHMSGGQAET LLQAKGEPWT FLVRESLSQP GDFVLSVLSD BACU003066/1-595 SDPTSERWYH GHMSGGQAET LLQAKGEPWT FLVRESLSQP GDFVLSVLSD 201 250 ENSP00000391592/1-624 QPKAGPGSPL RVTHIKVMCE GGRYTVGGLE TFDSLTDLVE HFKKTGIEEA ENSBTAP00000027046/1-593 QPKAGPGSPL RVTHIKVMCE GGRYTVGGSE TFDSLTDLVE HFKRTGIEEA bmy_11476T0/1-660 QPKAGPGSPL RVTHIKVMCE GGRYTVGGSE TFDSLTDLVE HFKRTGIEEA BACU003066/1-595 QPKAGPGSPL RVTHIKVMCE GGRYTVGGSE TFDSLTDLVE HFKRTGIEEA 251 300 ENSP00000391592/1-624 SGAFVYLRQP YYATRVNAAD IENRVLELNK KQESEDTAKA GFWEEFESLQ ENSBTAP00000027046/1-593 SGAFVYLRQP YYATRVNAAD IENRVLELNK KQESEETAKA GFWEEFESLQ bmy_11476T0/1-660 SGAFVYLRQP YYATRVNAAD IENRVLELNK KQESEDTAKA GFWEEFESLQ BACU003066/1-595 SGAFVYLRQP YYATRVNAAD IENRVLELNK KQESEDTAKA GFWEEFESLQ 301 350 ENSP00000391592/1-624 KQEVKNLHQR LEGQRPENKG KNRYKNILPF DHSRVILQGR DSNIPGSDYI ENSBTAP00000027046/1-593 KQEVKNLHQR LEGQRPENKS KNRYKNILPF DHSRVVLQGR DSNIPGSDYI bmy_11476T0/1-660 KQEVKNLHQR LEGQRPENKS KNRYKNILPF DHSRVVLQGR DSNIPGSDYI BACU003066/1-595 KQEVKNLHQR LEGQRPENKS KNRYKNILPF DHSRVVLQGR DSNIPGSDYI 351 400 ENSP00000391592/1-624 NANYIKNQLL GPDENAKTYI ASQGCLEATV NDFWQMAWQE NSRVIVMTTR ENSBTAP00000027046/1-593 NANYVKNQLL GPDENAKTYI ASQGCLEATV NDFWQMVWQE NTCVIVMTTR bmy_11476T0/1-660 NANYVKNQLL GPDENAKTYI ASQGCLEATV LDFWQMVWQE NTRVIVMTTR BACU003066/1-595 NANYVKNQLL GPDENAKTYI ASQGCLEATV IDFWQMVWQE NTRVIVMTTR 401 450 ENSP00000391592/1-624 EVEKGRNKCV PYWPEVGMQR AYGPYSVTNC GEHDTTEYKL RTLQVSPLDN ENSBTAP00000027046/1-593 EVEKGRNKCV PYWPEVGSQR VYGPYTVTNC GEHDTTEYKL RNLQVSPLEN bmy_11476T0/1-660 EVEKGRNKCV PYWPEVGTQR VYGLYAVTNC GEHDTAEYKL RTLQVSPLDN BACU003066/1-595 EVEKGRNKCV PYWPEVGTQR VYGLYAVTNC GEHDTAEYKL RTLQVSPLDN 451 500 ENSP00000391592/1-624 GDLIREIWHY QYLSWPDHGV PSEPGGVLSF LDQINQRQES LP-------- ENSBTAP00000027046/1-593 ENLIREIWHY QYLSWPDHGV PSEPGGVLSF LDQINQRQES LP-------- bmy_11476T0/1-660 GDLVREIWHY QYLSWPDHGV PSEPGGVLSF LDQINQRQEM PPTQPLGSCT BACU003066/1-595 GDLVREIWHY QYLSWPDHGV PSEPGGVLSF LDQINQRQES LP-------- 501 550 ENSP00000391592/1-624 --HAGPIIVH C-------SA GIGRTGTIIV IDMLMENIST KGLDCDIDIQ ENSBTAP00000027046/1-593 --HAGPIIVH C-------SA GIGRTGTIIV IDMLMESIST KGLDCDIDIQ bmy_11476T0/1-660 TSSTGDPHVH GQETPFLLSA GIGRTGTIIV IDMLMESIST KGLDCDIDIQ BACU003066/1-595 --HPGPIIVH C-------SA GIGRTGTIIV IDMLMESIST KGLDCDIDIQ 551 600 ENSP00000391592/1-624 KTIQMVRAQR SGMVQTEAQY KFIYVAIAQF IETTKKKLEV LQSQKGQESE ENSBTAP00000027046/1-593 KTIQMVRAQR SGMVQTEAQY KFIYVAIAQF IETTKKKLEV MQSQKGRESE bmy_11476T0/1-660 KTIQMVRAQR SGMVQTEAQY KFIYVAIAQF IETTKKKLEV MQSQKGRESE BACU003066/1-595 KTIQMVRSQR SGMVQTEAQY KFIYVAIAQF IETTKKKLEV MQSQKGRESE 601 650 ENSP00000391592/1-624 YGNITYPPAM KNAHAKASRT SSKSLESSAG TVAASPVRRG GQRGLPVPGP ENSBTAP00000027046/1-593 YGNITYPPAM KNAHAKASRT SSK--EDVYE NVHSKNKKEE KVKK------ bmy_11476T0/1-660 YGNITYPPAM KNAHAKAART SSKHKEDVYE NVHGKNKREE KVKK------ BACU003066/1-595 YGNITYPPAM KNAHAKAART SSKHKEDVYE NVHSRNKKEE KVKK------ 651 700 ENSP00000391592/1-624 PVLSPDLHQL PVLAPLHPAA DTRRMCMRTC TLRTRG--RR K ENSBTAP00000027046/1-593 ---------- ------QRSA DKE------- --KNKGSLKR K bmy_11476T0/1-660 ---------- ------QRSA DKE------- --KSKGSLKR K BACU003066/1-595 ---------- ------QRSA DKE------- --KSKGSLKR K