KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:31:07 2014 Check: 00 .. Name: bmy_18742T0/1-269 Len: 449 Check: 1803 Weight: 1.00 Name: ENSTTRP00000003392/1-363 Len: 449 Check: 424 Weight: 1.00 Name: BACU011424/1-434 Len: 449 Check: 2665 Weight: 1.00 Name: ENSBTAP00000027054/1-364 Len: 449 Check: 5877 Weight: 1.00 // 1 50 bmy_18742T0/1-269 ---------- ---------- ---------- ---------- -----MGKEP ENSTTRP00000003392/1-363 ---------- ---------- ---------- -----MAQQW GPQRFAGGQP BACU011424/1-434 MVKGLGAFKV RRPGLIPQAG IKHCDRQAAP GLAGIGAQHW GPQRFAGGQA ENSBTAP00000027054/1-364 ---------- ---------- ---------- -----MAHAW GPQRLAGGQP 51 100 bmy_18742T0/1-269 GKQGLENETD QEI----RCS PDRK------ ---------- ---------- ENSTTRP00000003392/1-363 -QTSFEDSTQ GSVFTYTNSN STRD------ ---------- ---------- BACU011424/1-434 -QASFEDSTQ GSVFTYTSSS STRGCPCRHL AGHGLELERE WREGCLQMCK ENSBTAP00000027054/1-364 -QANFEESTQ GSIFTYTNSN STRD------ ---------- ---------- 101 150 bmy_18742T0/1-269 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003392/1-363 ---------P FDGPNYHIAP RWVYHLTSVW MVFVLIASIF TNGPVLAATM BACU011424/1-434 ARGKDQSQRP LRRPRSPHRS RWVYQLTSAW MVFVVVASIL TNGLVLAATM ENSBTAP00000027054/1-364 ---------P FEGPNYHIAP RWVYHLTSAW MVFVVIASVF TNGLVLAATM 151 200 bmy_18742T0/1-269 ---------- ---------- ---------- ----TLFGEL ---------- ENSTTRP00000003392/1-363 KFKKLRHPLN WMLVNLAVAD LAETVIASTI SVVNQMYGYF VLGHPLCIVE BACU011424/1-434 KFRKLRHPLN WILVNLAIAD LAETIIAGTI SSVNQMYGYF VLGHPLCIVE ENSBTAP00000027054/1-364 RFKKLRHPLN WILVNLAIAD LAETIIASTI SVVNQMYGYF VLGHPLCVVE 201 250 bmy_18742T0/1-269 GF----AGIT GLWSLAIISW ERWMVVCKPF GNVRFDAKLA IAGIAFSWIW ENSTTRP00000003392/1-363 GFTVSLCGIT GLWSLAIISW ERWMVVCKPF GNVRFDAKLA IAGIAFSWIW BACU011424/1-434 GYTVSLCGIT GLWSLAIISW ERWMVVCKPF GNMRFDAKLA IAGIAFSWIW ENSBTAP00000027054/1-364 GYTVSLCGIT GLWSLAIISW ERWMVVCKPF GNVRFDAKLA ITGIAFSWIW 251 300 bmy_18742T0/1-269 AAVWTAAPIF GWSRYTWAVG YQCPYQADPL GEVPNFQGNG SGTGPTAWRP ENSTTRP00000003392/1-363 AAVWTAPPIF GW-KY-WPHG LKTSCGPDV- -----FSGS- SYPGVQSYMI BACU011424/1-434 AAVWAAPPIF GWSRY-RPHG LKTSCGPDV- -----FRGS- SYPGVRSHMI ENSBTAP00000027054/1-364 AAVWTAPPIF GWSRY-WPHG LKTSCGPDV- -----FSGS- SYPGVQSYMI 301 350 bmy_18742T0/1-269 RVARTCSAAA RTLGCSLTRS CKQENEIGVL NTVAKQQKES ESTQKAEKEV ENSTTRP00000003392/1-363 TLMITCC--- -FIPLSVIVL CYLQVWLAI- RAXXXXXXXX XXXXXXXXXX BACU011424/1-434 VLVTTCC--- -FLPLSAIVL CYLQVWLAI- RAVAKQQKES ESTQKAEKEV ENSBTAP00000027054/1-364 VLMITCC--- -FIPLSVIIL CYLQVWLAI- RAVAKQQKES ESTQKAEKEV 351 400 bmy_18742T0/1-269 TRMVMVMIFA YCLCWGPYTF FACFAAAHPG YAFHPLVAAL PSYFAKSATI ENSTTRP00000003392/1-363 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU011424/1-434 TRMVMVMIFA YCLCWGPYTF FACFAAAHPG YAFHPLVAAL PSYFAQSATI ENSBTAP00000027054/1-364 TRMVMVMIFA YCLCWGPYTF FACFAAAHPG YAFHPLVAAL PAYFAKSATI 401 450 bmy_18742T0/1-269 YNPVIYVFMN RQVSHAVDRA NWKWTLEEPS DGSHLE---- ---ACLWEG ENSTTRP00000003392/1-363 XXXXXXXXXX XXFRNCILQL -FGKKVDDSS ELSSVSKTEA SSVSSVSPA BACU011424/1-434 YNPIIYVFMN RQFRSCSLRL -FGKKVEDSS ELSCVCKAEA SSVSSVSPA ENSBTAP00000027054/1-364 YNPIIYVFMN RQFRNCILQL -FGKKVDDSS ELSSVSKTEA SSVSSVSPA