KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:31:09 2014 Check: 00 .. Name: ENSP00000347232/1-1417 Len: 1433 Check: 1447 Weight: 1.00 Name: ENSBTAP00000027057/1-1417 Len: 1433 Check: 3972 Weight: 1.00 Name: BACU016069/1-1037 Len: 1433 Check: 4575 Weight: 1.00 Name: bmy_10344T0/1-848 Len: 1433 Check: 8861 Weight: 1.00 Name: ENSTTRP00000015530/1-1409 Len: 1433 Check: 8348 Weight: 1.00 // 1 50 ENSP00000347232/1-1417 MAAVPQNNLQ EQLERHSART LNNKLSLSKP KFSGFTFKKK TSSDNNVSVT ENSBTAP00000027057/1-1417 MAAVPQNNLQ EQLERHSARK LNNKLGLSKP KSSGFTFKKK VPSANNVSVT BACU016069/1-1037 ---------- ---------- ---------- ---------- ---------- bmy_10344T0/1-848 MAAVPQNNLQ EQLERHSARK LNNKLSLSKT KSSGFTFKKK VSSANDVSVT ENSTTRP00000015530/1-1409 MAAVPQNNLQ EQLERHSARK LNNKLSPSKP KSS------E IXSANDVCVT 51 100 ENSP00000347232/1-1417 NVSVAKTPVL RNKDVNVTED FSFSEPLPNT TNQQRVKDFF KNAPAGQETQ ENSBTAP00000027057/1-1417 SVSVAKTPVL SDKDVNITEA FSFSEPLPHT TNQQTGINDF KSAPSGPQTK BACU016069/1-1037 ---------- ---------- ---------- ---------- ---------- bmy_10344T0/1-848 SVSVAKAPVL NDKDVNITEG FSFSEPFPHT TDQQTKINDF KNTPAGQQTK ENSTTRP00000015530/1-1409 SVSVAKAPVM --KDVTITEA FSFSEPFPHT TNQQTKINDF KNTPAGQQTK 101 150 ENSP00000347232/1-1417 RGGSKSLLPD FLQTPKEVVC TTQNTPTVKK SRDTALKKLE FSSSPDSLST ENSBTAP00000027057/1-1417 RVGSKPLLPS LSQVPQEVSC TAQNTPVIKQ SLNATFKKLE FSSSSDSLIA BACU016069/1-1037 ---------- ---------- ---------- ---------- ---------- bmy_10344T0/1-848 RVGSKPLLPN LSQVPQEVLC TTQNTLVVKE SCDATFKKLE FSSSSDSLIT ENSTTRP00000015530/1-1409 RVGSKPLLPN LSQVPQEVLC TTQNTLLVKE SRDATFKKLE FSSSSDSLIT 151 200 ENSP00000347232/1-1417 INDWDDMDDF DTSETSKSFV TPPQSHFVRV STAQKSKKGK RNFFKAQLYT ENSBTAP00000027057/1-1417 FNDWDDMDDF DTSGNSKAFV TPCKNHFVRV STAQKSKKSK RNLVKAQLNK BACU016069/1-1037 ---------- ---------- ---------- ---------- ---------- bmy_10344T0/1-848 FNDWDDMDDF DTSGDSKAFV TPHQNHFIRV STAQKSKKSK RNFLKAHLDK ENSTTRP00000015530/1-1409 FSDWDDMDDF DTSGDSKAFV TPRQNHFIRV STAQKSKKSK RNFLKAHLGK 201 250 ENSP00000347232/1-1417 TNTVKTDLPP PSSESEQIDL TEEQKDDSEW LSSDVICIDD GPIAEVHINE ENSBTAP00000027057/1-1417 THTGETDLAP SSSESKQEHL TEKQKDDSEW LSSDVICIDD DPDPEELINE BACU016069/1-1037 ---------- ---------- ---------- ---------- ---------- bmy_10344T0/1-848 TSTVKTDLTP SSSESKQAYL TKKQKDDSEW LNSDVICIDD GPNSEELINE ENSTTRP00000015530/1-1409 TNTVKTDLTP SSSESKQAFL TKKQKDDSEW LNSDVICIDD DPNSEELINE 251 300 ENSP00000347232/1-1417 DAQESDSLKT HLEDERDNSE KKKNLEEAEL HSTEKVPCIE FDDDDYDTDF ENSBTAP00000027057/1-1417 DTQENHSLKT HLGAERGNCE KKKNLEETEL RSVEKSSCIE LDEDDYDIDF BACU016069/1-1037 ---------- ---------- ---------- ---------- ---------- bmy_10344T0/1-848 DTQENHPLKT HLGEERDNCE KKKNLEEMEL HSTEKSSCVE LDEDDYDIDF ENSTTRP00000015530/1-1409 DTQENHPLKT HLGEERDNCE KKKNLEEMEL HSFEKSSCVE LDEDDYDIDF 301 350 ENSP00000347232/1-1417 VPPSPEE-II SASSSSSKCL STLKDLDTSD RKEDVLSTSK DLLSKPEKMS ENSBTAP00000027057/1-1417 VPPSPEEGMT STSSSSLKCS SMLKDLDTSD KKHS-LSTSE D-LSKLKEMA BACU016069/1-1037 ---------- ---------- SVLKDLDTSD SKDG-LSTSE D-LSKSEKMT bmy_10344T0/1-848 VPPSPEEGMT SASSSSLKCS SVLKDLDTSD SKDG-LSTSE D-LSKSEKMT ENSTTRP00000015530/1-1409 VPPSPEEGMT STSSSSLKYS SVLKDLDTSD SKDG-LSISE D-LSKSEKMT 351 400 ENSP00000347232/1-1417 MQELNPETST DCDARQISLQ QQLIHVMEHI CKLIDTIPDD KLKLLDCGNE ENSBTAP00000027057/1-1417 TQQPNQETST SCEARQTSLQ QQLIRVMDRI CKLVDAVPDD ELKALDCGNE BACU016069/1-1037 TQQPNQETCT SYDARQISLQ QQLIRVMDHI CKLVDTIPDD KLKTLDCGNE bmy_10344T0/1-848 TQQPNQETCT SYDARQISLQ QQLIRVMDHI CKLVDTIPDD KLKTLDCGNE ENSTTRP00000015530/1-1409 TKQPNQETST SYDARQISLQ QQLIRVMDHI CELVDTIPDD KLKTLDCGNK 401 450 ENSP00000347232/1-1417 LLQQRNIRRK LLTEVDFNKS DASLLGSLWR YRPDSLDGPM ---------- ENSBTAP00000027057/1-1417 LLQQRDIRRK LLAEADFDPS DASVLSAMWG CRPDPLESPV ---------- BACU016069/1-1037 LLQQRDIRRK LLAEADFNTS DAIVLGSLWR CRPDSLGSSV EDMASVSPPC bmy_10344T0/1-848 LLQQRDLRRK LLAEADFNTS DAIVLGSLWR CRPDSLGSSV EDMASVSPPC ENSTTRP00000015530/1-1409 LLQQRDIRRK LLAEADFNTS DASVLGSLWR CRPDSLGSSV ---------- 451 500 ENSP00000347232/1-1417 ---EGDSCPT GNSMKELNFS HLPSNSVSPG DCLLTTTLGK TGFSATRKNL ENSBTAP00000027057/1-1417 ---KGDSCLA GNAVKEFTLP HLPSNSMSTR ERLLTPPLGK TGVLATTKSP BACU016069/1-1037 AFPKGDSCPT GNSVKEFTFP NLSSNSISTG ECLLTPTPGK TGFSAATKNL bmy_10344T0/1-848 AFPKGDSCPT GNSVKEFTFP NLSSNSISTG ECLLTPTPGK TGFSATTKNL ENSTTRP00000015530/1-1409 ---KGDSCPT GNSVKEFTFP NLPSNSISTG ECLLTPTPGK TGFSATTKNL 501 550 ENSP00000347232/1-1417 FERPLFNTHL QKSFVSSNWA ETPRLGKKNE SSYFPGNVLT STAVKDQNKH ENSBTAP00000027057/1-1417 FERPLFSSHL QKSFVSSNWA ETPRAEKRNE SPDFPGNVLT STAVKDQNKY BACU016069/1-1037 FERPLFNSHL QESFVSSNWA ETPRVEKRNE SSYFPGNVLT STAVKDKNKH bmy_10344T0/1-848 FERPLFNSHL QESFVSSNWA ETPRVEKRNE SSYFPGNVLT STAVKDKNKH ENSTTRP00000015530/1-1409 FERPLFNSHL QESFVSSNWA ETPRVEKRNE SSYFPGNVLT STAVKDQNKH 551 600 ENSP00000347232/1-1417 TASINDLERE TQPSYDIDNF DIDDF-DDDD DWEDIMHNLA ASKSSTAAYQ ENSBTAP00000027057/1-1417 TTSINDLERE LQAACEIDNF DIDDFDDDDD DWENLMQNLA ASKSSTAAYP BACU016069/1-1037 TTSMNDLERE IQASYDIDNF DIDDFDDDDD DWENVMHNLA ASKSSTAAYQ bmy_10344T0/1-848 TTSMNDLERE IQASYDIDNF DIDDFDDDDD DWENVMHNLA ASKSSTAAYQ ENSTTRP00000015530/1-1409 TTSMNDLERE IQASCDIDSF DIDDFDDDDD DWENVMHNLA ASKSSTAAYQ 601 650 ENSP00000347232/1-1417 PIKEGRPIKS VSER-LSSAK TDCLPVSSTA QNINFSESIQ NYTDKSAQNL ENSBTAP00000027057/1-1417 PIKEGRPVKS VSER-PSSAK TDCLPGASTT QNKNFSESIP NYPDKMEQNL BACU016069/1-1037 PIKEGRPVKS VSER-TSSAK TDCL-LASTA QNKNFSESIQ NYTDKSEQNL bmy_10344T0/1-848 PIKEGRPVKS VSER-TSSAK TDCF-LASTA QNKNFSESIQ NYTDKSEQNL ENSTTRP00000015530/1-1409 PIKEGRPVKS VSERISSSAK TDCL-LASTA QNKNFSESIQ NYTDKSEQSL 651 700 ENSP00000347232/1-1417 ASRNLKHERF QSLSFPHTKE MMKIFHKKFG LHNFRTNQLE AINAALLGED ENSBTAP00000027057/1-1417 ASRNPKHERF QSLNFPHTKE MMKIFHKKFG LHNFRTNQLE AINAALLGED BACU016069/1-1037 ASRDLKHERF QSLNFPHTKE MMKIFHKKFG LHNFRTNQLE AINAALLGED bmy_10344T0/1-848 ASRDLKHERF QSLNFPHTKE MMKIFHKKFG LHNFRTNQLE AINAALLGED ENSTTRP00000015530/1-1409 ASRDLKHERF QSLNFPHTKE MMKIFHKKFG LHNFRTNQLE AINAALLGED 701 750 ENSP00000347232/1-1417 CFILMPTGGG KSLCYQLPAC VSPGVTVVIS PLRSLIVDQV QKLTSLDIPA ENSBTAP00000027057/1-1417 CFILMPTGGG KSLCYQLPAC VSPGVTIVIS PLRSLIVDQV QKLTSLDIPA BACU016069/1-1037 CFILMPT--- ---------- --VEISLEHE P-KNYCQRPL PFLAVYLIPA bmy_10344T0/1-848 CFILMPTGGG KSLCYQLPAC VSPGVTIVIS PLRSLIVDQV QKLTSLDIPA ENSTTRP00000015530/1-1409 CFILMPTGGG KSLCYQLPAC VSPGVTIVIS PLRSLIIDQV QKLTSFDIPA 751 800 ENSP00000347232/1-1417 TYLTGDKTDS EATNIYLQLS KKDPIIKLLY VTPEKICASN RLISTLENLY ENSBTAP00000027057/1-1417 TYLTGDKTDS EATSIYLQLS KKDPIIKLLY VTPEKVCASN RLISTLENLY BACU016069/1-1037 TYLTGDKTDS EATSIYLQLS KKDPIIKLLY VTPEKVCASN RLISTLENLY bmy_10344T0/1-848 TYLTGDKTDS EATSIYLQLS KKDPIIKLLY VTPEKVCASN RLISTLENLY ENSTTRP00000015530/1-1409 TYLTGDKTDS EATNIYLQLS KKDPIIKLLY VTPEKVCASN RLISTLENLY 801 850 ENSP00000347232/1-1417 ERKLLARFVI DEAHCVSQWG HDFRQDYKRM NMLRQKFPSV PVMALTATAN ENSBTAP00000027057/1-1417 ERKLLARFVI DEAHCVSQWG HDFRPDYKRM NILRQKFPSV PVMALTATAN BACU016069/1-1037 ERKLLARFVI DEAHCVSQWG HDFRPDYKRM NMLRQKFPSV PMMALTATAN bmy_10344T0/1-848 ERKLLARFVI DEAHCVSQWG HDFRPDYKRM NMLRQKFPSV PMMALTATAN ENSTTRP00000015530/1-1409 ERKLLARFVI DEAHCVSQWG HDFRPDYKRM NMLRQKFPSV PVMALTATAN 851 900 ENSP00000347232/1-1417 PRVQKDILTQ LKILRPQVFS MSFNRHNLKY YVLPKKPKKV AFDCLEWIRK ENSBTAP00000027057/1-1417 PRVQKDILTQ LKILRPQVFS MSFNRHNLKY YVLPKKPKKV AFDCLEWIRK BACU016069/1-1037 PRVQKDILTQ LKILRPQVFS MSFNRHNLKY YVLPKKPKKV AFDCLEWIRK bmy_10344T0/1-848 PR-------- ---------- ---------- ---------- ---------- ENSTTRP00000015530/1-1409 PRVQKDILTQ LKILRPQVFS MSFNRHNLKY YVLPKKPKKV AFDCLEWIRK 901 950 ENSP00000347232/1-1417 HHPYDSGIIY CLSRRECDTM ADTLQRDGLA ALAYHAGLSD SARDEVQQKW ENSBTAP00000027057/1-1417 HHPHDSGIIY CLSRRECDTM AETLQNDGLA ALAYHAGLSD SARDEVQHKW BACU016069/1-1037 HHPHDSGIIY CLSRRECDTV ADTLQKDGLA ALAYHAGLSD SARDEVQHKW bmy_10344T0/1-848 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015530/1-1409 HHPHDSGIIY CLSRRECDTV ADTLQKDGLA ALAYHAGLSD SARDEVQHKW 951 1000 ENSP00000347232/1-1417 INQDGCQVIC ATIAFGMGID KPDVRFVIHA SLPKSVEGYY QESGRAGRDG ENSBTAP00000027057/1-1417 INQDGCQVIC ATIAFGMGID KPDVRFVIHA SLPKSVEGYY QESGRAGRDG BACU016069/1-1037 INQDGCQVIC ATIAFGMGID KPDVRFVIHA SLPKSMEGYY QESGRAGRDG bmy_10344T0/1-848 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015530/1-1409 INQDGCQVIC ATIAFGMGID KPDVRFVIHA SLPKSVEGYY QESGRAGRDG 1001 1050 ENSP00000347232/1-1417 EISHCLLFYT YHDVTRLKRL IMMEKDGNHH TRETHFNNLY SMVHYCENIT ENSBTAP00000027057/1-1417 EISHCILFYT YHDVTRLKRL ILMEKDGNRH TRETHFNNLY SMVHYCENIT BACU016069/1-1037 EISHCLLFYT YHDVTRLKRL ILMEKDGNHH TKETHFNNLY SMVHYCENIT bmy_10344T0/1-848 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015530/1-1409 EISHCLLFYT YHDVTRLKRL ILMEKDGNHH TKETHFNNLY SMVHYCENIT 1051 1100 ENSP00000347232/1-1417 ECRRIQLLAY FGENGFNPDF CKKHPDVSCD NCCKTKDYKT RDVTDDVKSI ENSBTAP00000027057/1-1417 ECRRIQLLAY FGENEFNPHF CKKYPDVSCD NCYKTKDFKT KDVTEDVKNI BACU016069/1-1037 ECRRIQLLAY FGENGFNPYF CKKYPDVSCD NCCKTKDYKT RDVTDDVKNI bmy_10344T0/1-848 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015530/1-1409 ECRRIQLLAY FGEKGFNPYF CKKYPDVSCD NCCKTKDYKT RDVTDDVKNI 1101 1150 ENSP00000347232/1-1417 VRFVQEHSSS QGMRNIKHVG PSGRFTMNML VDIFLGSKSA KIQSGIFGKG ENSBTAP00000027057/1-1417 VRFVQEHSSS QGTRNIKHIG PSGRFTMNML VDIFLGSKSA KIQSGIFGKG BACU016069/1-1037 VRFVQEHSSS QGTRNIKHVG PSGRFTMNML VDIFLGSKSA KIQSGIFGKG bmy_10344T0/1-848 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015530/1-1409 VRFVQEHSSS QGTRNIKHVG PSGRFTMNML VDIFLGSKSA KIQSGIFGKG 1151 1200 ENSP00000347232/1-1417 SAYSRHNAER LFKKLILDKI LDEDLYINAN DQAIAYVMLG NKAQTVLNGN ENSBTAP00000027057/1-1417 STYSRHNAER LFKKLILDRI LDEDLYINAN DQAIAYVMLG SKAQTVLNGH BACU016069/1-1037 SAYSRHNAER LFKKLILDRI LDEDLYINAN DQPIAYVMPG NKAQHVLNGH bmy_10344T0/1-848 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015530/1-1409 SAYSRHNAER LFKKLILDRI LDEDLYINAN DQPIAYVMPG NKAQHVLNGH 1201 1250 ENSP00000347232/1-1417 LKVDFMETEN SSSVKKQKAL VAKVSQREEM VKKCLGELTE VCKSLGKVFG ENSBTAP00000027057/1-1417 LKVDFMETEN SSSVKKQKAL VAKVSQREEV VKKCLGELTE VCKSLGKVFG BACU016069/1-1037 LKVDFMETEN SSSVKKQKAL VAKVSQREEM VKKCLGELTE VCKSLGKVFG bmy_10344T0/1-848 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015530/1-1409 LKVDFMETEN SSSVKKQKAL VTKVSQREEM VKKCLGELTE VCKSLGKVFG 1251 1300 ENSP00000347232/1-1417 VHYFNIFNTV TLKKLAESLS SDPEVLLQID GVTEDKLEKY GAEVISVLQK ENSBTAP00000027057/1-1417 VHYFNIFNTV TLKKLAESLS SDPEVLLQID GVTEDKLEKY GAEVIPILQK BACU016069/1-1037 VHYFNIFNTV TLKKLA---- ---------- ---------- ---------- bmy_10344T0/1-848 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015530/1-1409 VHYFNIFNTV TLKKLAESLS SDPEVLLQID GVTEDKLEKY GAEVIPILQK 1301 1350 ENSP00000347232/1-1417 YSEWTSPAED SSPGISLSSS RGPGRSAAEE LDEEIPVSSH YFASKTRNER ENSBTAP00000027057/1-1417 YSEWTLPAED TSPRRSPSSS RGTRKNTPEE SDEGAPISSH YFANKTRNER BACU016069/1-1037 -------AED DSSRRSPSSS RGTGRNAPEE LDEETPISSH YFANKTKNER bmy_10344T0/1-848 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015530/1-1409 YSEWTLPAED DSSRRSPSSS RGTGRNAPEE LDEETPISSH YFANKTKNER 1351 1400 ENSP00000347232/1-1417 KRKKMPASQR SKRRKTASSG SKAKGGSATC RKISSKTKSS SIIGSSSASH ENSBTAP00000027057/1-1417 KRKRMPASQK AKRRRTGFSG SRTKGGSNTC RRIPSKTKPS NIIGPSSTSH BACU016069/1-1037 KRKRMPASQR SKRRKTGFGG SKTKGYQWGA QQELQLKERV LHGGKEKGAP bmy_10344T0/1-848 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015530/1-1409 KRKRMPASQR SKRRKTGFSG SKTKGGSSTC RRIPSKTKSS SIFGPSSALH 1401 1450 ENSP00000347232/1-1417 TSQATSGANS KLGIMAPPKP INRPFLKPSY AFS ENSBTAP00000027057/1-1417 SSQAASGVSR KLGIMAPPKP INRPFLKPSY AFS BACU016069/1-1037 G--------- --GLQGPPPY KSCHSLRSP- --- bmy_10344T0/1-848 ---------- ---------- ---------- --- ENSTTRP00000015530/1-1409 GSQAASGVSR KLGIMAPPKP VNRPFLKPSY AFS