KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:31:09 2014 Check: 00 .. Name: BACU016220/1-330 Len: 333 Check: 8684 Weight: 1.00 Name: ENSP00000345719/1-332 Len: 333 Check: 4959 Weight: 1.00 Name: ENSBTAP00000027059/1-333 Len: 333 Check: 9489 Weight: 1.00 Name: bmy_08583T0/1-299 Len: 333 Check: 5774 Weight: 1.00 Name: ENSTTRP00000006184/1-250 Len: 333 Check: 3318 Weight: 1.00 // 1 50 BACU016220/1-330 MKLSWAALGL VLLAPLAVRA VEPISLGLAL AGVLTGYISY PRLYCLFAEC ENSP00000345719/1-332 MKLGRAVLGL LLLAPSVVQA VEPISLGLAL AGVLTGYI-Y PRLYCLFAEC ENSBTAP00000027059/1-333 MKLGRAALGL LLLAPLAVRA VEPISLGLAL AGVLTGYISY PRLYCLFAEC bmy_08583T0/1-299 MKLGRAALGL VLLAPLAVRA VEPISLGLAL AGVLTGYISY PRLYCLFAEC ENSTTRP00000006184/1-250 MKLGRAALGL VLLAPLAVRA VEPISLGLAL AGVLTGYISY PRLYCLFAEC 51 100 BACU016220/1-330 CSQKQSLSRD ---EGSGQQA LWTASCKESH LKCCVWLQQQ PEAQETSHPL ENSP00000345719/1-332 CGQKRSLSRE ALQKDLDDNL FGQHLAKKII LNAVFGFINN PKPKKPLTLS ENSBTAP00000027059/1-333 CSPKRSLSRE ALQKDLDSKL FGQHLAKKVI LNALSGFISN PKPKKPLTLS bmy_08583T0/1-299 CSQKQSLSRD ALQKDLDSKL FGQHLAKKVI LNAVSGFISN PKPKKPLTLS ENSTTRP00000006184/1-250 CSQKQSLSRD ALQKDLDSKL FGQHLAKKVI LNAVSGFISN PKPKKPLTLS 101 150 BACU016220/1-330 PNGWTGTGKN FVSKIIAENI YEGGLNSDYV HLFVATLHFP HVSNITLYKD ENSP00000345719/1-332 LHGWTGTGKN FVSKIIAENI YEGGLNSDYV HLFVATLHFP HASNITLYKD ENSBTAP00000027059/1-333 LHGWTGTGKN FVSKIIAENI YEGGLNSDYV HLFVATLHFP HISNITLYKD bmy_08583T0/1-299 LHGWTGTGKN FVSKIIAENI YEGGLNSDYV HLFVATLHFP H--------D ENSTTRP00000006184/1-250 LHGWTGTGKN FVSKIIAENI YEGGLNSDYV HLFVATLHFP HISDITLYKD 151 200 BACU016220/1-330 QLQSWIRGNV SACARSIFIF DEMDKMHAGL IDAIKPYLDY YDNLDGVSYQ ENSP00000345719/1-332 QLQLWIRGNV SACARSIFIF DEMDKMHAGL IDAIKPFLDY YDLVDGVSYQ ENSBTAP00000027059/1-333 QLQSWIRGNV SACARSIFIF DEMDKMHAGL IDAIKPYLDY YDNLDGVSYQ bmy_08583T0/1-299 QLQSWIRGNV SACARSIFIF DEMDKMHAGL IDAIKPYLDY YDNLDGVSYQ ENSTTRP00000006184/1-250 QLQSWIRGNV SACARSVFIF DEMDKMHAGL IDAIKPYLDY YDNLDGVSYQ 201 250 BACU016220/1-330 KAIFVFLSNA GAERITDVAL DFWRSGKQRE EIKLRDMEHA LSVSAFNNKN ENSP00000345719/1-332 KAMFIFLSNA GAERITDVAL DFWRSGKQRE DIKLKDIEHA LSVSVFNNKN ENSBTAP00000027059/1-333 KAIFIFLSNA GAERITDVAL DFWRSGKQRE EIKLKDMEHA LSVSAFNNKN bmy_08583T0/1-299 KAIFMFLSNA GAERITDVAL DFWRSG---- ---------- ---------- ENSTTRP00000006184/1-250 KAIFIFLSNA GAERITDVAL DFWRSGKQRE EIKLRDMEHA LSVSA----- 251 300 BACU016220/1-330 SGFWHSSLID RNLIDYFVPF LPLEYKHLKM CIRVEMQSRG YEVDEDIVSR ENSP00000345719/1-332 SGFWHSSLID RNLIDYFVPF LPLEYKHLKM CIRVEMQSRG YEIDEDIVSR ENSBTAP00000027059/1-333 SGFWHSSLID RNLIDYFVPF LPLEYKHLKM CIRVEMQSRG YEVDEDIVSR bmy_08583T0/1-299 --FWHSSLID RNLIDYFVPF LPLEYKHLKM CIRVEMQSRG YKVDEDIVSR ENSTTRP00000006184/1-250 ---------- ---------- ---------- ---------- ---------- 301 350 BACU016220/1-330 VAEEMTFFPK EERVFSDKGC KTVFTKLDYY YDD ENSP00000345719/1-332 VAEEMTFFPK EERVFSDKGC KTVFTKLDYY YDD ENSBTAP00000027059/1-333 VAEEMTFFPK EERVFSDKGC KTVFTKLDYY YDD bmy_08583T0/1-299 VAEEMTFFPK EERVFSDKGC KTVFTKLDYY YDD ENSTTRP00000006184/1-250 ---------- ---------- --------FN NKN