KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:31:10 2014 Check: 00 .. Name: ENSTTRP00000001010/1-1185 Len: 1188 Check: 6784 Weight: 1.00 Name: ENSP00000377895/1-1113 Len: 1188 Check: 7341 Weight: 1.00 Name: bmy_07363T0/1-1188 Len: 1188 Check: 8492 Weight: 1.00 Name: BACU016009/1-1188 Len: 1188 Check: 8258 Weight: 1.00 Name: ENSBTAP00000027060/1-1188 Len: 1188 Check: 9633 Weight: 1.00 // 1 50 ENSTTRP00000001010/1-1185 MGPRKKSVKT CLMNNDIPEE TISDETKDYM NQLSHEVLCH IFRYLPLQDI ENSP00000377895/1-1113 MGPRKKSVKT CIMNNEIPEE MTADETKDYM NQLSHEVLCH IFRYLPLQDI bmy_07363T0/1-1188 MGPRKKSVKT CLMNNDIPEE TVSDETKDYM NQLSHEVLCH IFRYLPLQDI BACU016009/1-1188 MGPRKKSVKT CLMNNDIPEE TISDETKDYM NQLSHEVLCH IFRYLPLQDI ENSBTAP00000027060/1-1188 MGPRKKSVKT CLVNNEIPEE AVSDETKDYM NQLSHEVLCH IFRYLPLQDI 51 100 ENSTTRP00000001010/1-1185 MCMECLSRKL KEAVTLYLKV VRVVDLCAGR WWEYMPS-FT DSSFLTLLKK ENSP00000377895/1-1113 MCMECLSRKL KEAVTLYLRV VRVVDLCAGR WWEYMPSGFT DASFLTLLKK bmy_07363T0/1-1188 MCMECLSRKL KEAVTLYLRV VRVVDLCAGR WWEYMPSGFT DSSFLTLLKK BACU016009/1-1188 MCMECLSRKL KEAVTLYLRV VRVVDLCAGR WWEYMPSGFT DSSFLTLLKK ENSBTAP00000027060/1-1188 MCMECLSRKL KEAVTLYLRV VRVVDLCAGR WWEYMPSGFT DSSFLTLLKK 101 150 ENSTTRP00000001010/1-1185 MPDVEQLYGL HPKYLERRRV RGHEAFNIP- VLEALQ-CPN LMGVETSHLE ENSP00000377895/1-1113 MPDVEQLYGL HPRYLERRRV RGHEAFSIPG VLEALQACPN LVGVETSHLE bmy_07363T0/1-1188 MPDVEQLYGL HPRYLERRRV RGHEAFSIPG VLEALQACPN LVGVETSHLE BACU016009/1-1188 MPDVEQLYGL HPRYLERRRV RGHEAFSIPG VLEALQACPN LVGVETSHLE ENSBTAP00000027060/1-1188 MPDVEQLYGL HPRYLERRRV RGHEAFSIPG VLEALQACPN LVGVETSHLE 151 200 ENSTTRP00000001010/1-1185 LVESIWTYMP HVHILGKFRN RNGAFPIPPE NKLKIPVGAK IQTLHLVGVN ENSP00000377895/1-1113 LVESIWTYMP HVHILGKFRN RNGAFPIPPE NKLKIPIGAK IQTLHLVGVN bmy_07363T0/1-1188 LVESIWTYMP HVHILGKFRN RNGAFPIPPE NKLKIPVGAK IQTLHLVGVN BACU016009/1-1188 LVESIWTYMP HVHILGKFRN RNGAFPIPPE NKLKIPVGAK IQTLHLVGVN ENSBTAP00000027060/1-1188 LVESIWTYMP HVHILGKFRN RNGAFPIPPE NKLKIPIGAK IQTLHLVGVN 201 250 ENSTTRP00000001010/1-1185 VPEIPCIPML RHLYMKWVRL TKPQPFKDFL CISLRTFVMR NCAGPTNSLK ENSP00000377895/1-1113 VPEIPCIPML RHLYMKWVRL TKPQPFKDFL CISLRTFVMR NCAGPTNSLK bmy_07363T0/1-1188 VPEIPCIPML RHLYMKWVRL TKPQPFKDFL CISLRTFVMR NCAGPTNSLK BACU016009/1-1188 VPEIPCIPML RHLYMKWVRL TKPQPFKDFL CISLRTFVMR NCAGPTNSLK ENSBTAP00000027060/1-1188 VPEIPCIPML RHLYMKWVRL TKPQPFKDFL CISLRTFVMR NCAGPTNSLK 251 300 ENSTTRP00000001010/1-1185 YVPLVTGLAS ARNLEHLEMV RVPFLGGLIQ HVVEDSWRSG GFRNLHTIVL ENSP00000377895/1-1113 YVPLVTGLAS ARNLEHLEMV RVPFLGGLIQ HVVEDSWRSG GFRNLHTIVL bmy_07363T0/1-1188 YVPLVTGLAS ARNLEHLEMV RVPFLGGLIQ HVVEDSWRSG GFRNLHTIVL BACU016009/1-1188 YVPLVTGLAS ARNLEHLEMV RVPFLGGLIQ HVVEDSWRSG GFRNLHTIVL ENSBTAP00000027060/1-1188 YVPLVTGLAS ARNLEHLEMV RVPFLGGLIQ HVVEDSWRSG GFRNLHTIVL 301 350 ENSTTRP00000001010/1-1185 GACKNALEVD LGYLIITAAR RLHEVRIQPS LTKDGVFSAL KMAELEFPQF ENSP00000377895/1-1113 GACKNALEVD LGYLIITAAR RLHEVRIQPS LTKDGVFSAL KMAELEFPQF bmy_07363T0/1-1188 GACKNALEVD LGYLIITAAR RLHEVRIQPS LTKDGVFSAL KMAELEFPQF BACU016009/1-1188 GACKNALEVD LGYLIITAAR RLHEVRIQPS LTKDGVFSAL KMAELEFPQF ENSBTAP00000027060/1-1188 GACKNALEVD LGYLIITAAR RLHEVRIQPS LTKDGVFSAL KMAELEFPQF 351 400 ENSTTRP00000001010/1-1185 ETLHLGYVDE FLLQSRMANA DLVKYGLADV VENPGIITDI GMKAVNEVFS ENSP00000377895/1-1113 ETLHLGYVDE FLLQSRMANA DLVKYGLADV VENPGIITDI GMKAVNEVFS bmy_07363T0/1-1188 ETLHLGYVDE FLLQSRMANA DLVKYGLADV VENPGIITDI GMKAVNEVFS BACU016009/1-1188 ETLHLGYVDE FLLQSRMANA DLVKYGLADV VENPGIITDI GMKAVNEVFS ENSBTAP00000027060/1-1188 ETLHLGYVDE FLLQSRMANA DLVKYGLADV VENPGIITDI GMKAVNEVFS 401 450 ENSTTRP00000001010/1-1185 CIKYLAIYNC PHLHNPYNWI SDHSRWTRLV DINLVRCHAL KLDSFGQFIE ENSP00000377895/1-1113 CIKYLAIYNC PHLHNPYNWI SDHSRWTRLV DINLVRCHAL KLDSFGQFIE bmy_07363T0/1-1188 CIKYLAIYNC PHLHNPYNWI SDHSRWTRLV DINLVRCHAL KLDSFGQFIE BACU016009/1-1188 CIKYLAIYNC PHLHNPYNWI SDHSRWTRLV DINLVRCHAL KLDSFGQFIE ENSBTAP00000027060/1-1188 CIKYLAIYNC PHLHNPYNWI SDHSRWTRLV DINLVRCHAL KLDSFGQFIE 451 500 ENSTTRP00000001010/1-1185 LLPSLEFISL DQMFREPPKG CARVGLSAGT GIGVSSALVS NQNSNNDNDN ENSP00000377895/1-1113 LLPSLEFISL DQMFREPPKG CARVGLSAGT GIGVSSALVS NQNSNNDDNN bmy_07363T0/1-1188 LLPSLEFISL DQMFREPPKG CARVGLSAGT GIGVSSALVS NQNSNNDNDN BACU016009/1-1188 LLPSLEFISL DQMFREPPKG CARVGLSAGT GIGVSSALVS NQNSNNDNDN ENSBTAP00000027060/1-1188 LLPSLEFISL DQMFREPPKG CARVGLSAGT GIGVSSALVS NQNSNNDNDN 501 550 ENSTTRP00000001010/1-1185 NAQNNANIHD NNHHHPDDSD EENDFRQDLQ PGEQQFAADA LNEMEDMVPE ENSP00000377895/1-1113 AQNNNANIHD NNHHHPDDSD EENDFRQDLQ PGEQQFAADA LNEMEDIVQE bmy_07363T0/1-1188 NAQNNANIHD NNHHHPDDSD EENDFRQDLQ PGEQQFAADA LNEMEDMVQE BACU016009/1-1188 NAQNNANIHD NNHHHPDDSD EENDFRQDLQ PGEQQFAADA LNEMEDMVQE ENSBTAP00000027060/1-1188 NAQNNANIHD NNHHHPDDSD EENDFRQDLQ PGEQQFAADA LNEMEDMVQE 551 600 ENSTTRP00000001010/1-1185 DGEVTAESEH EAPAHSQAVI PVDVDEEQAG PSGLQRVVKP TPITVHDSES ENSP00000377895/1-1113 DGEVVAESGN NTPAHSQAII PVDVDEEQAG PSGLQRVVKP TSITVHDSES bmy_07363T0/1-1188 DGEVTAESEH EAPAHSQAVI PVDVDEEQAG PSGLQRVVKP TPITVHDSES BACU016009/1-1188 DGEVTAESEH EAPAHSQAVI PVDVDEEQAG PSGLQRVVKP TPITVHDSES ENSBTAP00000027060/1-1188 DGEVMAESGH ETPAHSQAVV PVDVDEEQAG PSGLQRVVKP TPITVHDSES 601 650 ENSTTRP00000001010/1-1185 DDEEDSLELQ EVWIPKNGAR RFSEHEEKTG ESVQSRELSV SGKGKTPLRK ENSP00000377895/1-1113 DDEEDSLELQ EVWIPKNGTR RYSEREEKTG ESVQSRELSV SGKGKTPLRK bmy_07363T0/1-1188 DDEEDSLELQ EVWIPKNGAR RFSEREEKTG ESVQSRELSV SGKGKTPLRK BACU016009/1-1188 DDEEDSLELQ EVWIPKNGAR RFSEREEKTG ESVQSRELSV SGKGKTPLRK ENSBTAP00000027060/1-1188 DDEEDSLELQ EVWIPKNGAR RFSEREEKTG ESVQSRELSV SGKGKTPLRK 651 700 ENSTTRP00000001010/1-1185 RYNSHQMGQS KQFPLEESSC EKGCQVTSEQ IKADMKAARD IPEKKKNKDV ENSP00000377895/1-1113 RYNSHQMGQS KQFPLEESSC EKGCQVTSEQ IKADMKAARD IPEKKKNKDV bmy_07363T0/1-1188 RYNSHQMGQS KQFPLEESSC EKGCQVTSEQ IKADMKAARD IPEKKKNKDV BACU016009/1-1188 RYNSHQMGQS KQFPLEESSC EKGCQVTSEQ IKADMKAARD IPEKKKNKDV ENSBTAP00000027060/1-1188 RYNSHQMGQS KQFPLEESSC EKGCQVTSEQ IKADMKAARD IPEKKKNKDV 701 750 ENSTTRP00000001010/1-1185 YPSCSSTTAS TVGNSSSHST ASQSPDFVRT VNSSGSSEPS PTEVDVSRQC ENSP00000377895/1-1113 YPSCSSTTAS TVGNSSSHNT ASQSPDFVRT VNSGGSSEPS PTEVDVSRQC bmy_07363T0/1-1188 YPSCSSTTAS TVGNSSSHSA ASQSPDFVRT VNSSGSSEPS PAEVDVSRQC BACU016009/1-1188 YPSCSSTTAS TVGNSSSHSA ASQSPDFVRT VNSSGSSEPS PAEVDVSRQC ENSBTAP00000027060/1-1188 YPSCSSTTAS TVGNSSSHST ASQSPDFVRT VNSSGSSEPS PTEVDVSRQC 751 800 ENSTTRP00000001010/1-1185 VCSPGGSEDS EAMEEGDAES SVCPRCCCHR PQESQRRTSR CSDEERPSTS ENSP00000377895/1-1113 ACSPGGSEDS EAMEEGDAES SVCPRCCCHR PQESQRRTSR CSDEERPSTS bmy_07363T0/1-1188 VCSPGGSEDS EAVEEGBAES SVCPRCCCRR PQESQRRTSR CSDEERPSTS BACU016009/1-1188 VCSPGGSEDS EAVEEGDAES SVCPRCCCRR PQESQRRTSR CSDEERPSTS ENSBTAP00000027060/1-1188 VCSPGGSEDS EAMEEGDAES SVCPRCCCHR PQESQRRTSR CSDEERPSTS 801 850 ENSTTRP00000001010/1-1185 RACVVNGPDG TRSAFSFRTL PPGGSSGPAH DERTNGSGSG ATGEDRRGSS ENSP00000377895/1-1113 RACVVNGPD- ---------- ---------- ---------- ---------- bmy_07363T0/1-1188 RACVVNGPDG TRSAFSFRTL PPGGSSGPAH DERTNGSGSG ATGEDRRGSS BACU016009/1-1188 RACVVNGPDG TRSAFSFRTL PPGGSSGPAH DERTNGSGSG ATGEDRRGSS ENSBTAP00000027060/1-1188 RACVVNGPDG TRSAFSFRTL PQGGSSGPAH DERTNGSGSG ATGEDRRGSS 851 900 ENSTTRP00000001010/1-1185 QPESCDVQSN EDYPRRPLTR ARSRLSHVPL VSESEVAKTK PRHAMKRKRT ENSP00000377895/1-1113 ---------- ---------- ---------- ----EVAKTK PRHAMKRKRT bmy_07363T0/1-1188 QPESCDVQSN EDYPRRPLTR ARSRLSHVPL VSESEVAKTK PRHAMKRKRT BACU016009/1-1188 QPESCDVQSN EDYPRRPLTR ARSRLSHVPL VSESEVAKTK PRHAMKRKRT ENSBTAP00000027060/1-1188 QPERCDVQSN EDYPRRPLTR ARSRLSHVPL VSESEVAKTK PRHAMKRKRT 901 950 ENSTTRP00000001010/1-1185 ADKSTSTSDP VIEDDHVQVL VLKSKNLVGV TMTNCGITDL VLKDCPKMMF ENSP00000377895/1-1113 ADKSTSTSDP VIEDDHVQVL VLKSKNLVGV TMTNCGITDL VLKDCPKMMF bmy_07363T0/1-1188 ADKSTSTSDP VIEDDHVQVL VLKSKNLVGV TMTNCGITDL VLKDCPKMMF BACU016009/1-1188 ADKSTSTSDP VIEDDHVQVL VLKSKNLVGV TMTNCGITDL VLKDCPKMMF ENSBTAP00000027060/1-1188 ADKSTSTSDP VIEDDHVQVL VLKSKNLVGV TMTNCGITDL VLKDCPKMMF 951 1000 ENSTTRP00000001010/1-1185 IHATRCRVLK HLKVENAPIV NRFDYAQCKK LNMDQVLDQI LRMPPERNRI ENSP00000377895/1-1113 IHATRCRVLK HLKVENAPIV NRFDYAQCKK LNMDQVLDQI LRMPPERNRI bmy_07363T0/1-1188 IHATRCRVLK HLKVENAPIV NRFDYAQCKK LNMDQVLDQI LRMPPERNRI BACU016009/1-1188 IHATRCRVLK HLKVENAPIV NRFDYAQCKK LNMDQVLDQI LRMPPERNRI ENSBTAP00000027060/1-1188 IHATRCRVLK HLKVENAPIV NRFDYAQCKK LNMDQVLDQI LRMPPERNRI 1001 1050 ENSTTRP00000001010/1-1185 IYLRPMQQVD TLTLEQKLFS GPYPYHICII HEFSNPPNVR NKVRIRSWMD ENSP00000377895/1-1113 IYLRPMQQVD TLTLEQKLFS GPYPYHICII HEFSNPPNVR NKVRIRSWMD bmy_07363T0/1-1188 IYLRPMQQVD TLTLEQKLFS GPYPYHICII HEFSNPPNVR NKVRIRSWMD BACU016009/1-1188 IYLRPMQQVD TLTLEQKLFS GPYPYHICII HEFSNPPNVR NKVRIRSWMD ENSBTAP00000027060/1-1188 IYLRPMQQVD TLTLEQKLFS GPYPYHICII HEFSNPPNVR NKVRIRSWMD 1051 1100 ENSTTRP00000001010/1-1185 TIANINQELI KYEFFPDATR SEDDLKKYPK YPWGREIYTL EXXXXXXXXX ENSP00000377895/1-1113 TIANINQELI KYEFFPEATR SEEDLKKYPK YPWGREIYTL EGVVDGAPYS bmy_07363T0/1-1188 TIANINQELI KYEFFPEATR SEDDLKKYPK YPWGREIYTL EGVVDGAPYS BACU016009/1-1188 TIANINQELI KYEFFPEATR SEDDLKKYPK YPWGREIYTL EGVVDGAPYS ENSBTAP00000027060/1-1188 TIANINQELI KYEFFPEATR SEDDLKKYPK YPWGREIYTL EGVVDGAPYS 1101 1150 ENSTTRP00000001010/1-1185 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX TIYAPRRKGQ LSADICMETI ENSP00000377895/1-1113 MISDFPWLRS LRAAEPNSFA RYDFEDDEES TIYAPRRKGQ LSADICMETI bmy_07363T0/1-1188 MISDFPWLRS LRAAEPNSFA RYDFEDDEES TIYAPRRKGQ LSADICMETI BACU016009/1-1188 MISDFPWLRS LRAAEPNSFA RYDFEDDEES TIYAPRRKGQ LSADICMETI ENSBTAP00000027060/1-1188 MISDFPWLRS LRAAEPNSFA RYDFEDDEES TIYAPRRKGQ LSADICMETI 1151 1200 ENSTTRP00000001010/1-1185 GEEISEMRQM KKGVFQRVVA IFIHYCDVNG EPVEDDYI ENSP00000377895/1-1113 GEEISEMRQM KKGVFQRVVA IFIHYCDVNG EPVEDDYI bmy_07363T0/1-1188 GEEISEMRQM KKGVFQRVVA IFIHYCDVNG EPVEDDYI BACU016009/1-1188 GEEISEMRQM KKGVFQRVVA IFIHYCDVNG EPVEDDYI ENSBTAP00000027060/1-1188 GEEISEMRQM KKGVFQRVVA IFIHYCDVNG EPVEDDYI