KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:31:12 2014 Check: 00 .. Name: ENSP00000313811/1-914 Len: 1212 Check: 7235 Weight: 1.00 Name: ENSBTAP00000027070/1-912 Len: 1212 Check: 7418 Weight: 1.00 Name: BACU016218/1-1050 Len: 1212 Check: 4217 Weight: 1.00 Name: bmy_08581T0/1-912 Len: 1212 Check: 6741 Weight: 1.00 Name: ENSTTRP00000006196/1-915 Len: 1212 Check: 6487 Weight: 1.00 // 1 50 ENSP00000313811/1-914 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027070/1-912 ---------- ---------- ---------- ---------- ---------- BACU016218/1-1050 MMKATQDYKI KIREFPETDD DEEENLVKNM EDRLPLAVEG GNTVIKVNGK bmy_08581T0/1-912 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006196/1-915 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000313811/1-914 ---------- -----MGDSR DL-------- ---------- ---------- ENSBTAP00000027070/1-912 ---------- -----MGDSR DL-------- ---------- ---------- BACU016218/1-1050 RVRGRRYPWG IAEVKSGEHW DLTILRSMLL RTHMQDLKNV IGNVRYENYR bmy_08581T0/1-912 ---------- -----MGDSR DL-------- ---------- ---------- ENSTTRP00000006196/1-915 ---------- -----MGDAR DL-------- ---------- ---------- 101 150 ENSP00000313811/1-914 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027070/1-912 ---------- ---------- ---------- ---------- ---------- BACU016218/1-1050 SRKPAAVTYN GVDNNKNKRQ LPKSPLAQME EERRERVAKM KLEMEQVLEM bmy_08581T0/1-912 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006196/1-915 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000313811/1-914 ---------- ---------- ---------- -------CPH LDSIG----- ENSBTAP00000027070/1-912 ---------- ---------- ---------- -------CPH LDSIG----- BACU016218/1-1050 KAKEKVQKLK DSEAELQRQH EQRKKNLEAL HKELEEKCHQ FEDEKANWKA bmy_08581T0/1-912 ---------- ---------- ---------- -------CPH LDSVG----- ENSTTRP00000006196/1-915 ---------- ---------- ---------- -------CPH LDSVG----- 201 250 ENSP00000313811/1-914 ---EVTKEDL LLKSKGTCQS CGVTGPNLWA CLQVACPYVG CGESFADHST ENSBTAP00000027070/1-912 ---EVTKEDL LLKSKSTCQS CGVSGPNLWA CLQVSCSYVG CGESFADHST BACU016218/1-1050 QQWEVTKEDL LLKSK----- ---------- ---VACSYVG CGESFADHST bmy_08581T0/1-912 ---EVTKEDL LLKSK----- ---------- ---------- ---------- ENSTTRP00000006196/1-915 ---EVTKEDL LLKSKGTCQS CGVSGPNLWA CLQVACSYVG CGESFADHST 251 300 ENSP00000313811/1-914 IHAQAKKHNL TVNLTTFRLW CYACEKEVFL EQRLAAPLLG SSSKFSEQDS ENSBTAP00000027070/1-912 LHAQAKKHNL TVNLTTFRVW CYACEKEVFL EPRLAAHPPG PAPKFSEQDS BACU016218/1-1050 IHAQAKKHNL TVNLTTFRVW CYACEKEVFL EPRLAAQPPG PSPKFSEQDS bmy_08581T0/1-912 ----AKKHNL TVNLTTFRVW CYACEKEVFL EPRLAAQPPG PSPKFSEQDS ENSTTRP00000006196/1-915 IHAQAKKHNL TVNLTTFRVW CYACEKEVFL EPRLAAQPPG PSPKFSEQDS 301 350 ENSP00000313811/1-914 PPPSHPLKAV PIAVADEGES ESEDDDLKPR ---------- ---------- ENSBTAP00000027070/1-912 PPPSHPLKAV PIAVADEGES ESEDDDLKPR ---------- ---------- BACU016218/1-1050 ALPSHPLKAV PIAVADEGES ESEDDDLKPP LRFRSRAGWP VGHDGFPGAP bmy_08581T0/1-912 VLPSHPLKAV PIAVADEGES ESEDDDLKPR ---------- ---------- ENSTTRP00000006196/1-915 APPSHPLKAV PIAVADEGES ESEDDDLKPR ---------- ---------- 351 400 ENSP00000313811/1-914 ---------- ---------- ---------G LTGMKNLGNS CYMNAALQAL ENSBTAP00000027070/1-912 ---------- ---------- ---------G LTGMKNLGNS CYMNAALQAL BACU016218/1-1050 AAALSPVQPC APGRAGPSAP RPLPLLGADG LTGMKNLGNS CYMNAALQAL bmy_08581T0/1-912 ---------- ---------- ---------G LTGMKNLGNS CYMNAALQAL ENSTTRP00000006196/1-915 ---------- ---------- ---------G LTGMKNLGNS CYMNAALQAL 401 450 ENSP00000313811/1-914 SNCPPLTQFF LECGGLVRTD KKPALCKSYQ KLVSEVWHKK RPSYVVPTSL ENSBTAP00000027070/1-912 SNCPPLTQFF LECGGLVRTD KKPALCKSYQ KLVSEVWHRK RPSYVVPTSL BACU016218/1-1050 SNCPPLTQFF LECGGLVRTD KKPALCKSYQ KLVSEVWHRK RPSYVVPTSL bmy_08581T0/1-912 SNCPPLTQFF LECGGLVRTD KKPALCKSYQ KLVSEVWHRK RPSYVVPTSL ENSTTRP00000006196/1-915 SNCPPLTQFF LECGGLVRTD KKPALCKSYQ KLVSEVWHRK RPSYVVPTSL 451 500 ENSP00000313811/1-914 SHGIKLVNPM FRGYAQQDTQ EFLRCLMDQL HEELKEPVVA T-VALTEARD ENSBTAP00000027070/1-912 SHGIKLVNPM FRGYAQQDTQ EFLRCLMDQL HEELKEPVVA TAAALTEARD BACU016218/1-1050 SHGIKLVNPM FRGYAQQDTQ EFLRCLMDQL HEELKEPVVA AAAALTEARD bmy_08581T0/1-912 SHGIKLVNPM FRGYAQQDTQ EFLRCLMDQL HEELKEPVVA AAAALTEARD ENSTTRP00000006196/1-915 SHGIKLVNPM FRGYAQQDTQ EFLRCLMDQL HEELKEPVVA AAAALTEARD 501 550 ENSP00000313811/1-914 SDSSDTDEKR EGDRSPSEDE FLSCDSSSDR GEGDGQGRGG GSSQAETELL ENSBTAP00000027070/1-912 SDSSDTDEKR EGDRSPSEDE FLSCDSSSDR GEGDGQGRSG GGSQAEAELL BACU016218/1-1050 SDSSDTDEKR EGDRSPSEDE FLSCDSSSDR GEGDGQGRGR GGSQAETELL bmy_08581T0/1-912 SDSSDTDEKR EGDRSPSEDE FLSCDSSSDR GEGDGQGRGG GGSQAETELL ENSTTRP00000006196/1-915 SDSSDTDEKR EGDRSPSEDE FLSCDSSSDR GEGDGQGRGG GGPQAETELL 551 600 ENSP00000313811/1-914 IPDEAGRAIS EKERMKDRKF SWGQQRTNSE QVDEDADVDT AMAALDDQPA ENSBTAP00000027070/1-912 MADEAGRAIS EKERMKDRKF SWGQQRTNSE QVDEDADVDT AMAALEQQPP BACU016218/1-1050 IADEAGRAIS EKERMKDRKF SWGQQRTNSE QVDEDADVDT AMAALDQQPT bmy_08581T0/1-912 IADEAGRAIS EKERMKDRKF SWGQQRTSSE QVDEDADVDT AMAALDQQPT ENSTTRP00000006196/1-915 VADEAGRAIS EKERMKDRKF SWGQQRTNSE QVDEDADVDT AMAALNQQPT 601 650 ENSP00000313811/1-914 EAQPPSPRSS SPCRT----- ---------- ---------- ---------- ENSBTAP00000027070/1-912 ETQPPSPRST SPCRT----- ---------- ---------- ---------- BACU016218/1-1050 DTQPPSPRST SPCRA----- ---------- ---------- ---------- bmy_08581T0/1-912 DTQPPPPRST SPCRTPGTRQ ATRGVAAPFV QLLLGGGAPT ACSATPHAGG ENSTTRP00000006196/1-915 DTQPPSPRST SPCRT----- ---------- ---------- ---------- 651 700 ENSP00000313811/1-914 ---------- ---------- -----PEPDN DAHLRSSSRP CSPVHHHEGH ENSBTAP00000027070/1-912 ---------- ---------- -----PEPDN EAHMRS-SRP CSPVHHHEGH BACU016218/1-1050 ---------- ---------- -----PEPDN EAHMRSASRP CSPVHHHEGH bmy_08581T0/1-912 LSHETRLTGP GLARLPCPST VPPLPPEPDN EAHMRSASRP CSPVHHHEGH ENSTTRP00000006196/1-915 ---------- ---------- -----PEPDN EAHMRSASRP CSPVHLHEGH 701 750 ENSP00000313811/1-914 AKLSSSPPRA SPVRMAPSYV LKKAQVLSAG SRRRKEQRYR SVISDIFDGS ENSBTAP00000027070/1-912 AKLASSPHRA SPVRMGPAYV LKKAQVP--G SRRRKEQSYR SVISDIFDGS BACU016218/1-1050 AKLAGSPPRA SPVRMGPSYV LKKAQVPGAG SRRRKEQRYR SVISDIFDGS bmy_08581T0/1-912 AKLAGSPPRA SPVRMGPSYV LKKAQVPGAG SRRRKEQRYR SVISDIFDGS ENSTTRP00000006196/1-915 AKLASSPPRA SPVRMGPSYV LKKAQVPSSG SRRRKEQRYR SVISDIFDGS 751 800 ENSP00000313811/1-914 ILSLVQCLTC DRVSTTVETF QDLSLPIPGK EDLAKLHSAI YQNVPAKPGA ENSBTAP00000027070/1-912 VLSLVQCLTC DRVSTTVETF QDLSLPIPGK EDLAKLHSAI YQNVPAKPGA BACU016218/1-1050 ILSLVQCLTC DRVSTTVETF QDLSLPIPGK EDLAKLHSAI YQNVPAKPGA bmy_08581T0/1-912 ILSLVQCLTC DRVSTTVETF QDLSLPIPGK EDLAKLHSAI YQNVPAKPGA ENSTTRP00000006196/1-915 ILSLVQCLTC DRVSTTVETF QDLSLPIPGK EDLAKLHSAI YQNVPAKPGS 801 850 ENSP00000313811/1-914 CGDSYAAQGW LAFIVEYIRR FVVSCTPSWF WGPVVTLEDC LAAFFAADEL ENSBTAP00000027070/1-912 CGDSYVAQGW LAFIVEYIRR FVVSCTPSWF WGPVVTLEDC LAAFFAADEL BACU016218/1-1050 CGDSSAAQGW LAFIVEYIRR FVVSCTPSWF WGPVVTLEDC LAAFFAADEL bmy_08581T0/1-912 CGDSSAAQGW LAFIVEYIRR FVVSCTPSWF WGPVVTLEDC LAAFFAADEL ENSTTRP00000006196/1-915 CGDSSTAQGW LAFIVEYIRR FVVSCTPSWF WGPVVTLEDC LAAFFAADEL 851 900 ENSP00000313811/1-914 KGDNMYSCER CKKLRNGVKY CKVLRLPEIL CIHLKRFRHE VMYSFKINSH ENSBTAP00000027070/1-912 KGDNMYSCER CKKLRNGVKY CKVLRLPEIL CIHLKRFRHE VMYSFKISSH BACU016218/1-1050 KGDNMYSCER CKKLRNGVKY CKVLRLPEIL CIHLKRFRHE VMYSFKISSH bmy_08581T0/1-912 KGDNMYSCER CKKLRNGVKY CKVLRLPEIL CIHLKRFRHE VMYSFKISSH ENSTTRP00000006196/1-915 KGDNMYSCER CKKLRNGVKY CKVLRLPEIL CIHLKRFRHE VMYSFKISSH 901 950 ENSP00000313811/1-914 VSFPLEGLDL RPFLAKECTS QITTYDLLSV ICHHGTAGSG HYIAYCQNVI ENSBTAP00000027070/1-912 VSFPLEGLDL RPFLAKECTS QITTYDLLSV ICHHGTAGSG HYIAYCQNVI BACU016218/1-1050 VSFPLEGLDL RPFLAKECTS QITTYDLLSV ICHHGTAGSG HYIAYCQNVI bmy_08581T0/1-912 VSFPLEGLDL RPFLAKECTS QITTYDLLSV ICHHGTAGSG HYIAYCQNVI ENSTTRP00000006196/1-915 VSFPLEGLDL RPFLAKECTS QITTYDLLSV ICHHGTAGSG HYIAYCQNVI 951 1000 ENSP00000313811/1-914 NGQWYEFDDQ YVTEVHETVV QNAEGYVLFY RKSSEEAMRE RQQVVSLAAM ENSBTAP00000027070/1-912 NGQWYEFDDQ YVTEVHETVV QNAEAYVLFY RKSSEEAVRE RQQVVSLAAM BACU016218/1-1050 NGQWYEFDDQ YVTEVHETVV QNAEAYVLFY ---------- ---------- bmy_08581T0/1-912 NGQWYEFDDQ YVTEVHETVV QNAEAYVLFY RKSSEEAVRE RQQVVSLAAM ENSTTRP00000006196/1-915 NGQWYEFDDQ YVTEVHETVV QNAEAYVLFY RKSSEEAVRE RQQVVSLAAM 1001 1050 ENSP00000313811/1-914 REPSLLRFYV SREWLNKFNT FAEPGPITNQ TFLCSHGGIP PHKYHYIDDL ENSBTAP00000027070/1-912 REPSLLRFYV SREWLNKFNT FAEPGPITNH TFLCSHGGIP PNKYHYIDDL BACU016218/1-1050 ---------- ---------- ---------- ---------- ---------- bmy_08581T0/1-912 REPSLLRFYV SREWLNKFNT FAEPGPITNH TFLCSHGGIP PYKYHYIDDL ENSTTRP00000006196/1-915 REPSLLRFYV SREWLNKFNT FAEPGPITNH TFLCSHGGIP PNKYHYIDDL 1051 1100 ENSP00000313811/1-914 VVILPQNVWE HLYNRFGGGP AVNHLYVCSI CQVEIEALAK RRRIEIDTFI ENSBTAP00000027070/1-912 VVILPQNVWE HLYSRFGGGP AVNHLYVCSI CQVEIEALAK RRRVEIDTFI BACU016218/1-1050 ---------- ----RFGGGP AVNHLYVCSI CQVEIEALAK RRRIEIDTFI bmy_08581T0/1-912 VVILPQNVWE HLYNRFGGGP AVNHLYVCSI CQVEIEALAK RRRIEIDTFI ENSTTRP00000006196/1-915 VVILPQNVWE HLYNRFGGGP AVNHLYVCSI CQVEIEALAK RRRIEIDTFI 1101 1150 ENSP00000313811/1-914 KLNKAFQAEE SPGVIYCISM QWFREWEAFV KGKDNEPPGP IDNSRIAQVK ENSBTAP00000027070/1-912 KLNKAFQAEE SPSVIYCISM QWFREWEAFV KGKDNEPPGP IDNSRIAQVK BACU016218/1-1050 KLNKAFQAEE SPSVIYCISM QWFREWEAFV KGKDNEPPGP IDNSRIAQVR bmy_08581T0/1-912 KLNKAFQAEE SPSIIYCISM QWFREWEAFV KGKDN----- ---------- ENSTTRP00000006196/1-915 KLNKAFQAEE SPSVIYCISM QWFREWEAFV KGKDNEPPGP IDNSRIAQVK 1151 1200 ENSP00000313811/1-914 GSGHVQLKQG ADYGQISEET WTYLNSLYGG GPEIAIRQSV AQPLGPENLH ENSBTAP00000027070/1-912 GSGHIQLKPG ADYGQISEET WVYLNNLYGG GPEIAIRQSV AQLPDPESLH BACU016218/1-1050 GSGHIQLKQG ADYGQISEET WVYLNNLYGG GPEIALRQSV AQLQDPESLH bmy_08581T0/1-912 ---------G ADYGQISEET WVYLNNLYGG GPEIALRQSV AQLQDPESLH ENSTTRP00000006196/1-915 GSGHIQLKQG ADYGQISEET WVYLNNLYGG GPEIALRQSV AQLQDPDSLH 1201 1250 ENSP00000313811/1-914 GEQKIEAETR AV ENSBTAP00000027070/1-912 GEQKIEAETR AL BACU016218/1-1050 GEQKIEAETR AV bmy_08581T0/1-912 GEQKIEAETR AV ENSTTRP00000006196/1-915 GEQKIEAETR AV