KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:31:18 2014 Check: 00 .. Name: bmy_09811T0/1-169 Len: 288 Check: 704 Weight: 1.00 Name: BACU006387/1-231 Len: 288 Check: 4135 Weight: 1.00 Name: ENSP00000377059/1-270 Len: 288 Check: 3991 Weight: 1.00 Name: ENSTTRP00000015695/1-275 Len: 288 Check: 7796 Weight: 1.00 Name: ENSBTAP00000027082/1-270 Len: 288 Check: 2313 Weight: 1.00 // 1 50 bmy_09811T0/1-169 MNSLR----- ---------S DDKVCSTFSK MLTQATRPSE DG-------- BACU006387/1-231 MGGTRLRIGR QSPFSSLARV HRAASQEVIT VRVQDPRVQN EGSWNSYVDY ENSP00000377059/1-270 -MGFWCRM-- ---------S ENQEQEEVIT VRVQDPRVQN EGSWNSYVDY ENSTTRP00000015695/1-275 -MGFWCRM-- ---------L ENQEQEEVIT VRVQDPRVQN EGSWNSYVDY ENSBTAP00000027082/1-270 -MGFWCRM-- ---------L ENQEQEEVIT VRVQDPRVQN EGSWNSYVDY 51 100 bmy_09811T0/1-169 ---------- ---------- -------LGR ATSRGDALCC PTCVCP---- BACU006387/1-231 KIFLHTNSKA FTAKTSCVRR RYREFVWLRK QLQRNAGL-V PVPELPGKST ENSP00000377059/1-270 KIFLHTNSKA FTAKTSCVRR RYREFVWLRK QLQRNAGL-V PVPELPGKST ENSTTRP00000015695/1-275 KIFLHTNSKA FTAKTSCVRR RYREFVWLRK QLQRNAGL-V PVPELPGKST ENSBTAP00000027082/1-270 KIFLHTNSKA FTAKTSCVRR RYREFVWLRK QLQRNAGL-V PVPELPGKST 101 150 bmy_09811T0/1-169 ---------- ---------- -RVLQSVVLL SDSQLHLFLQ SQLSVPEIEA BACU006387/1-231 FFGSSDEFIE KRRQGLQHFL EKVLQSVVLL SDSQLHLFLQ SQLSVPEIEA ENSP00000377059/1-270 FFGTSDEFIE KRRQGLQHFL EKVLQSVVLL SDSQLHLFLQ SQLSVPEIEA ENSTTRP00000015695/1-275 FFGSSDEFIE KRRQGLQHFL EKVLQSVVLL SDSQLHLFLQ SQLSVPEIEA ENSBTAP00000027082/1-270 FFGSSDEFIE KRRQGLQHFL EKVLQSVVLL SDSQLHLFLQ SQLSVPEIEA 151 200 bmy_09811T0/1-169 CVQGRSPMSV SDAILRYAMS NCGWAQEERR GSSHLAKGDQ PKS------- BACU006387/1-231 CVQGRSPMSV SDAILRYAMS NCGWAQEERR GSSHLAKGDQ PKS------- ENSP00000377059/1-270 CVQGRSTMTV SDAILRYAMS NCGWAQEERQ SSSHLAKGDQ PKSCCFLPRS ENSTTRP00000015695/1-275 CVQGRSPMSV SDAILRYAMS NCGWAQEERR GSTHLAKGDQ PKSCCFLPRS ENSBTAP00000027082/1-270 CVQGRSPVSV SDAILRYAMS NCGWAQEERR GSSHLAEGDQ PKSCCFLPRP 201 250 bmy_09811T0/1-169 ----NSSLPP G--------- ---------- -----FSHRV SLCCVAVCSI BACU006387/1-231 WHHTSPTQSA GNQR------ ---------- --RPL--HRS RF-------- ENSP00000377059/1-270 GRRSSPSPPP SEEKDHLEVW APVVDSEVPS LESPTLPPLS SPLCCDFGRP ENSTTRP00000015695/1-275 GRRSSLSPPP GEEKDSFEVW APAVDSEAPS LESPPLPPPS FPSCCGFARP ENSBTAP00000027082/1-270 GRRSSPSPPP GEEKDPFEVW APVVDSEAPP LESPTLPPTS SPSCCGFARP 251 300 bmy_09811T0/1-169 QWGAGAL--- --FLPGERAL GMEMRNNTPS FRQ----- BACU006387/1-231 ---------- -------YTV SMNLGFLLRS STQC---- ENSP00000377059/1-270 KEGTSTLQSV RRAVGGDHAV PLDPGQLE-T VLEK---- ENSTTRP00000015695/1-275 DEGISAPQPV RRAMGGDRAV RLDPGQLETT VLEKALLG ENSBTAP00000027082/1-270 DEGLSASQPV RRVLGGGHAV PLDPGQLE-T VLEK----