KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:31:18 2014 Check: 00 .. Name: ENSP00000286544/1-710 Len: 716 Check: 2361 Weight: 1.00 Name: ENSBTAP00000027092/1-650 Len: 716 Check: 7661 Weight: 1.00 Name: ENSTTRP00000006090/1-601 Len: 716 Check: 8035 Weight: 1.00 Name: bmy_03562T0/1-590 Len: 716 Check: 8156 Weight: 1.00 Name: BACU010801/1-629 Len: 716 Check: 3039 Weight: 1.00 // 1 50 ENSP00000286544/1-710 MRGENRPIGK RTLPPRAGWI GGCPGSQPDA KARKGWTLAP HSSRCHRCCH ENSBTAP00000027092/1-650 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006090/1-601 ---------- ---------- ---------- ---------- ---------- bmy_03562T0/1-590 ---------- ---------- ---------- ---------- ---------- BACU010801/1-629 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000286544/1-710 YRCHCRCCLC PAEMTVGRPE GAPGGAEGSR QIFPPESFAD TEAGEELSGD ENSBTAP00000027092/1-650 ---------- ---MTVGRSA GASGGAQWNH QIFSPKSSSD TDADKELNGD ENSTTRP00000006090/1-601 ---------- ---MTVGRSA GASGGAQWSR QIFPPKSSSD TEAEEELCGN bmy_03562T0/1-590 ---------- ---MTVGRSA GASGGAQWSR QIFPPKSSSD TEAEEELCGD BACU010801/1-629 ---------- ---------- --------MV KIFPPKSSSD TEAEEELCGD 101 150 ENSP00000286544/1-710 GLVLPRASKL DEFLSPEEEI DSTSDSTGSI YQNLQELKQK GRWCLLESLF ENSBTAP00000027092/1-650 GLVLPRAGKL SEFLSPEEET DSTSDSTGSF FETLQALRQK DRWCLLESLY ENSTTRP00000006090/1-601 GLVLPRAGKL SEFISPEEET DSTSDSTASF YETLQALRQK DRWCLLESLY bmy_03562T0/1-590 GLVLPRAGKL SEFISPEEET DSTSDSTASF YETLQALRQK GRWCLLESLY BACU010801/1-629 GLVLPRAGKL SEFISPEEET DSTSDSTASF YETLQALRQK GRWCLLESLY 151 200 ENSP00000286544/1-710 QSDPESDENL SEDEEDLESF FQDKDRGMVQ VQCPQALRCG STRRCSSLNN ENSBTAP00000027092/1-650 PSDPDSNESL SEEDEDLEHF FRDEDRGKPQ VQYPPSARCG SVRRCSSWGT ENSTTRP00000006090/1-601 LSDPDSDESL SEDDEDLESF FQDKGRGKPQ VQSPLSPXXX XXXXXXXXXX bmy_03562T0/1-590 LSDPDSDESL PEDDEDLEKL LSSR------ -------RCG SMRRCSSLSN BACU010801/1-629 LSDPDSDESL SEDDEDLESF FQDKGRGKPQ VQYPPSPRYG SMRRCSSLSN 201 250 ENSP00000286544/1-710 LPSNIPRPQT QPPSGSRPPS QHRSVSSWAS SITVPRPFRM TLREARKKAE ENSBTAP00000027092/1-650 LPSRTPKAQP QPPSSSRPPS QQRSISSWVS SITVPQPFRM TLREARKKAQ ENSTTRP00000006090/1-601 XXXXXXXXXX XXXXXXXXXX XXXXXXSWAS SITVPQPFRM TLREAWKKAQ bmy_03562T0/1-590 LPSDLPKAQP QPPSSSRPLS QHRSISSWAS SITVPQPFRM TLREAGKKAQ BACU010801/1-629 LPSNLPKAQP QPPSSSRPLS QHRSISSWAS SITVPQPFRM TLREAGKKAQ 251 300 ENSP00000286544/1-710 WLGSPASFEQ ERQRAQRQGE EEAECHRQFR AQPVPAHVYL PLYQEIMERS ENSBTAP00000027092/1-650 WLASPASFEP ERRQAEKQGR EEAECHRQFR AQPVPAHVYL PLYQEVMERN ENSTTRP00000006090/1-601 WLASPASFEH ERQKAQKQGQ EEAECHRQFR AQPVPAHVYL PLYQEIMERN bmy_03562T0/1-590 WLASPASFEH ERQQAQKQGQ EEAECHRQFR AQPVPAHVYL PLYQEIMERN BACU010801/1-629 WLASPASFEH ERQQAQKQGQ EEAECHRQFR AQPVPAHVYL PLYQEIMERN 301 350 ENSP00000286544/1-710 EARRQAGIQK RKELLLSSLK PFSFLEKEEQ LKEAARQRDL --AATAEAKI ENSBTAP00000027092/1-650 EARRQAGIQK RKELLLSSLK PFSFLEKEER RKQAALQRDL AAAAAATAKV ENSTTRP00000006090/1-601 EARRRAGIQK RKELLLSSLK PFSFLGKDEQ RKKAIQQRDL --VATAKAKV bmy_03562T0/1-590 EARRRAGIQK RKELLLSSLK PFSFLGKDEQ RKKAIQQRDL --VATAKAKV BACU010801/1-629 EARRRAGIQK RKELLLSSLK PFSFLGKDEQ RKKAIQQRDL --VATAKAKV 351 400 ENSP00000286544/1-710 SKQKATRRIP KSILEPALGD KLQEAELFRK IRIQMRALDM LQMASSPIAS ENSBTAP00000027092/1-650 PKQKATRRIP KSILEPALGD KLQEAELLRK IRIHMRALDM LQKASSPIAP ENSTTRP00000006090/1-601 PKQKAIRRIP TAILEPALGD KLQEAELLRK IRIQMRALDM LQMASSPIAS bmy_03562T0/1-590 PKQKATRRIP KSILEPALGD KLQEAELLRK IRIQMRALDM LQMASSPIAF BACU010801/1-629 PKQKATRRIP KSILEPALGD KLQEAELLRK IRIQMRALDM LQMASSPIAS 401 450 ENSP00000286544/1-710 SSNRANPQPR TATRTQQEKL GFLHTNFRFQ PRVNPVVPDY EGLYKAFQRR ENSBTAP00000027092/1-650 SSSQADPQPR TATRTREEKL GFLHTDFGFQ PRVNPAVPDY EELYKAFQKR ENSTTRP00000006090/1-601 SSGRADSQPR IATRTREEKL GFLHTDFGFQ PRVNPAVPDY EELYKAFQKR bmy_03562T0/1-590 SSGRADSQPR IATRTREEKL GFLHTDFGFQ PQVNPAVPDY EELYKAFQKR BACU010801/1-629 SSGRADSQPR IATRTREEKL GFLHTDFGFQ PRVNPAVPDY EELYKAFQKR 451 500 ENSP00000286544/1-710 AAKRRETQEA TRNKPFLLRT ANLRHPQRPC DAATTGRRQD SPQPPATPLP ENSBTAP00000027092/1-650 AAKRRDTREA TRNKPFLLRT ASLCHTRRPC DVATSEGRKE SPQPPTTRLS ENSTTRP00000006090/1-601 AAKRRDTKEV TRNKPFLLRT ASLHRTPRPC DAAASEGRRE SPQPPGTPLP bmy_03562T0/1-590 AAKRRDTQEV TRNKPFLLRT ASLRRTPRPC DAAASEGRRE SPQPPGTPLP BACU010801/1-629 AAKRRDTQEV TRNKPFLLRT ASLRRTPRPC DAAASEGRRE SPQPPATPLP 501 550 ENSP00000286544/1-710 RSRSLSGLAS LSANTLPVHI TDATRKRESA VRSALEKKNK ADESIQWLEI ENSBTAP00000027092/1-650 RSRSLNGLAS LSANTLPVHI TDATRKRESA VRCSLEKKDK ADESTQWLEM ENSTTRP00000006090/1-601 RSRSLSGLAS LSANTLPVHI TDATRKRESA VRNSLEKKDK ADQSTQWSEM bmy_03562T0/1-590 RSRSLSGLAS LSANTLPVHI TDATRKRESA VRRSLEKKDK ADQSTQWSEM BACU010801/1-629 RSRSLSGLAS LSANTLPVHI TDATRKRESA VRRSLEKKDK ADQSTQWSEM 551 600 ENSP00000286544/1-710 HKKKSQAMSK SVTLRAKAMD PHKSLEEVFK AKLKENRNND RKRAKEYKKE ENSBTAP00000027092/1-650 HKKKCQAISK SVTLRAKAMD PHKSLEEVFK AKLKENRNND RKRAKEYKKE ENSTTRP00000006090/1-601 HKKKCQAISK SVTLRAKAMD PHKSLEEVFK AKLKENRNND RKRAKEYKKE bmy_03562T0/1-590 HKKKCQAISK SVTLRAKAMD PHKSLEEVFK AKLKENRNND RKRAKEYKKE BACU010801/1-629 HKKKCQAISK SVTLRAKAMD PHKSLEEVFK AKLKENRNND RKRAKEYKKE 601 650 ENSP00000286544/1-710 LEEMKQRIQT RPYLFEQVAK DLAKKEAEQW YLDTLKQAGL EEDFVRNKGQ ENSBTAP00000027092/1-650 LEEMKKRIQR RPYLFEQVTK DLAKKEAEQR YRDTLKQAGL DEDFVRNKGQ ENSTTRP00000006090/1-601 LEEMKKRIQI RPYLFEQVTK DLARKEAEQR YRDTLKHAGL DEDFVRNKGQ bmy_03562T0/1-590 LEEMKKRIQI RPYLFEQVTK DLARKEAEQR YRDTLRHAGL DEDFVRNKGQ BACU010801/1-629 LEEMKKRIQI RPYLFEQVTK DLARKEAEQR YRDTLRHAGL DEDFVRNKGQ 651 700 ENSP00000286544/1-710 GTRAVQEKET KI----KDFP RFQETTKLSI RDPEQGLEGS LEQPASPRKV ENSBTAP00000027092/1-650 GSRALQWKEQ WEV---GDCP STHETTKRGS RNPQQDLEES LEQLSSPKKE ENSTTRP00000006090/1-601 GNRALQWKEI KV----RDC- ---------- --P------- ---------- bmy_03562T0/1-590 GNRALQWKEQ SEV---RDC- ---------- --PR------ ---------- BACU010801/1-629 GNRALKWKEQ SEVPLMKLC- ------KLGI RNPRQDLEES LEQPTSPKKE 701 750 ENSP00000286544/1-710 LEELSHQSPE NLVSLA ENSBTAP00000027092/1-650 LEELSYKLPD NFRTLA ENSTTRP00000006090/1-601 ---------- ------ bmy_03562T0/1-590 ---------- ------ BACU010801/1-629 LEELSYELPD NLKSFG