KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:31:23 2014 Check: 00 .. Name: ENSP00000288943/1-314 Len: 314 Check: 9557 Weight: 1.00 Name: ENSTTRP00000004692/1-169 Len: 314 Check: 5703 Weight: 1.00 Name: ENSBTAP00000027120/1-314 Len: 314 Check: 7503 Weight: 1.00 Name: bmy_06902T0/1-311 Len: 314 Check: 486 Weight: 1.00 Name: BACU017725/1-189 Len: 314 Check: 3561 Weight: 1.00 // 1 50 ENSP00000288943/1-314 MGLEAARELE CAALGTLLRD PREAERTLLL DCRPFLAFCR RHVRAARPVP ENSTTRP00000004692/1-169 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027120/1-314 MGLEAARELD CAALGALLRE PREAERTLVL DCRPFLAFCR RHVRAARPVP bmy_06902T0/1-311 MGLEAARELD CTALGALLRE PREAERTLLL DCRPFLAFCR RHVRAARPVP BACU017725/1-189 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000288943/1-314 WNALLRRRAR GPPAAVLACL LPDRALRTRL VRGELARAVV LDEGSASVAE ENSTTRP00000004692/1-169 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027120/1-314 WNALLRRRAR GPPAAALACL LPDRALRARL ARGELARAVV LDEGSASVAD bmy_06902T0/1-311 WNALLRRRAR GPPAAALACL LPDRALRARL ARGELARAVV LDEGSASVAE BACU017725/1-189 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000288943/1-314 LRPDSPAHVL LAALLHETRA GPTAVYFLRG GFDGFQGCCP DLCSEAPAPA ENSTTRP00000004692/1-169 ---------- ---------- ---------- GFDSFQACCP DLCFESPGPA ENSBTAP00000027120/1-314 LPPDGPAHAL LAALLHETRA GPTAVCFLPG GFDRFQACCP DLCSESPVPA bmy_06902T0/1-311 IQPDGPAHAL LAALLHETRD GPTAVCFLPG GFDSFQACCP DLCSESPGPA BACU017725/1-189 ---------- ---------- --TAVCFLPG GFDSFQACCP DLCSESPGPA 151 200 ENSP00000288943/1-314 LPPTGDKTSR SDSRAPVYDQ GGPVEILPYL FLGSCSHSSD LQGLQACGIT ENSTTRP00000004692/1-169 MPP---ESSR SDPRVPVYDQ GGPVEILPYL YLGSCSHSSD LQGLQACGIT ENSBTAP00000027120/1-314 MTPDNNDNSR SDSRAPSYDQ GGPVEILPYL YLGSCSHSSD LQGLRACGIT bmy_06902T0/1-311 MPP---ENSR SDSRALSYDQ GGPVEILPYL YLGSCSHSSD LQGLQACGIT BACU017725/1-189 MPP---ENSR FDPRAPSYDQ GGPVEILPYL YLGSCSHSSD LQGLQACGIT 201 250 ENSP00000288943/1-314 AVLNVSASCP NHFEGLFRYK SIPVEDNQMV EISAWFQEAI GFIDWVKNSG ENSTTRP00000004692/1-169 AVLNVSASCP NHFEGLLRYK SIPVEDSQMV EISAWFQEAI GFIDSVKNSG ENSBTAP00000027120/1-314 AVLNVSASCP NHFEGLLRYK SIPVEDNQMV EISAWFPEAI GFIDSVKNSG bmy_06902T0/1-311 AVLNVSASCP NHFEGLLRYK SIPVEDNQMV EISAWFQEAI GFIDSVKNSG BACU017725/1-189 AVLNVSASCP NHFEELLRYK SIPVEDNQMV EISAWFQEAI GFIDSVKNSG 251 300 ENSP00000288943/1-314 GRVLVHCQAG ISRSATICLA YLMQSRRVRL DEAFDFVKQR RGVISPNFSF ENSTTRP00000004692/1-169 GRVLVHCQAG ISRSATICLA YLIQSHRVL- -DVFDFVKQR QGVI-PNFGF ENSBTAP00000027120/1-314 GRVLVHCQAG ISRSATICLA YLIQSRRVRL DEAFDFVKQR RGVISPNFSF bmy_06902T0/1-311 GRVLVHCQAG ISRSATICLA YLIQSHRVRL DEAFDFVKQR RGVISPNFGF BACU017725/1-189 GRVLVHCQAG ISRSATICLA YLIQSHRVRL DEAFDFVKQR RGVISPNFGF 301 350 ENSP00000288943/1-314 MGQLLQFETQ VLCH ENSTTRP00000004692/1-169 MGQLL----- ---- ENSBTAP00000027120/1-314 MGQLLQFETQ VLCH bmy_06902T0/1-311 MGQLLQFETQ VLCH BACU017725/1-189 MGQLLQFETQ VLCH