KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:31:24 2014 Check: 00 .. Name: ENSP00000321424/1-639 Len: 1091 Check: 11 Weight: 1.00 Name: ENSBTAP00000027121/1-639 Len: 1091 Check: 1057 Weight: 1.00 Name: BACU002878/1-1091 Len: 1091 Check: 5731 Weight: 1.00 Name: ENSTTRP00000009075/1-626 Len: 1091 Check: 3537 Weight: 1.00 Name: bmy_08376T0/1-554 Len: 1091 Check: 8937 Weight: 1.00 // 1 50 ENSP00000321424/1-639 ---------- ---------- -----MLS-- ---------- ---------- ENSBTAP00000027121/1-639 ---------- ---------- -----MMS-- ---------- ---------- BACU002878/1-1091 MPGKPKHLGV PNGRMPQGQG EGRGSSLSIH SLPSGPSSPF PTEEQPVASW ENSTTRP00000009075/1-626 ---------- ---------- -----MMS-- ---------- ---------- bmy_08376T0/1-554 ---------- ---------- -----MMS-- ---------- ---------- 51 100 ENSP00000321424/1-639 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027121/1-639 ---------- ---------- ---------- ---------- ---------- BACU002878/1-1091 AVSFERLLQD PLGLAYFTEF LKKEFSAENV TFWKACERFQ QIPASDTQQL ENSTTRP00000009075/1-626 ---------- ---------- ---------- ---------- ---------- bmy_08376T0/1-554 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000321424/1-639 -------YGE RLGSPAVSPL ---------- ---------- ---------- ENSBTAP00000027121/1-639 -------YGE KVGGRAVSPL ---------- ---------- ---------- BACU002878/1-1091 AQEARNIYQE FLSSQALSPV NIDRQAWLGE EVLAEPRPDM FRAQQLQIFN ENSTTRP00000009075/1-626 -------YGE RLESRAVSPL ---------- ---------- ---------- bmy_08376T0/1-554 -------YGE RLEGRAVSPL ---------- ---------- ---------- 151 200 ENSP00000321424/1-639 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027121/1-639 ---------- ---------- ---------- ---------- ---------- BACU002878/1-1091 LMKFDSYARF VKSPLYRECL LAEAEGRPLR EPSSSRLGSP DATRKKPKLK ENSTTRP00000009075/1-626 ---------- ---------- ---------- ---------- ---------- bmy_08376T0/1-554 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000321424/1-639 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027121/1-639 ---------- ---------- ---------- ---------- ---------- BACU002878/1-1091 PGKSLPLGVE ELGQLPPAEG PGGRPLRMSF RRELGGGASN SALRRESQGS ENSTTRP00000009075/1-626 ---------- ---------- ---------- ---------- ---------- bmy_08376T0/1-554 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000321424/1-639 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027121/1-639 ---------- ---------- ---------- ---------- ---------- BACU002878/1-1091 LNSSASLDLG FLAFVSSKSE VSPLLGEMSS EGDSESRPGK YCCVYLPDGT ENSTTRP00000009075/1-626 ---------- ---------- ---------- ---------- ---------- bmy_08376T0/1-554 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000321424/1-639 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027121/1-639 ---------- ---------- ---------- ---------- ---------- BACU002878/1-1091 ASLALARPGL TIRDMLAGIC EKRGLSLPDI KVYLVGNEQK ALVLDQDCTV ENSTTRP00000009075/1-626 ---------- ---------- ---------- ---------- ---------- bmy_08376T0/1-554 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000321424/1-639 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027121/1-639 ---------- ---------- ---------- ---------- ---------- BACU002878/1-1091 LADQEVRLEN RITFELELTA LERVVRISAK PTKRLQEALQ PILAKHGLSP ENSTTRP00000009075/1-626 ---------- ---------- ---------- ---------- ---------- bmy_08376T0/1-554 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000321424/1-639 ---------- ---------- ---------- ---------- -----PVR-- ENSBTAP00000027121/1-639 ---------- ---------- ---------- ---------- -----PVR-- BACU002878/1-1091 QQVALRRPGE KQPLDLRKLV SSVAAERLVL DTLPGVKIPE AGDISPCCSQ ENSTTRP00000009075/1-626 ---------- ---------- ---------- ---------- -----PVC-- bmy_08376T0/1-554 ---------- ---------- ---------- ---------- -----PVC-- 451 500 ENSP00000321424/1-639 GGHVMRGTAF AYVPSP---- ---------- -------QVL HRIPGTSAYA ENSBTAP00000027121/1-639 GGHMMHGAAF AYVPSP---- ---------- -------QVL HRIPGTSAYG BACU002878/1-1091 GGQPTIQDKA AHLPPLSLNS LAQAPSSITG KRQTCDIEVL HRIPGTSAYA ENSTTRP00000009075/1-626 GGHMTCGAAF AYVPSP---- ---------- -------QVL HRIPGTSAYA bmy_08376T0/1-554 RGHMMRGAAF AYVPSP---- ---------- -------QVL HRIPGTSAYA 501 550 ENSP00000321424/1-639 FPSLGPVALA EHTCPCGEVL ERHEPLPAKL ALEEEQKPES RLVPKLRQAG ENSBTAP00000027121/1-639 FPSVGPVALP EHGCPYGEVV EHHDPLPAKL ALEDERKPEP GLVQKLHRAG BACU002878/1-1091 FPSLGPVALA EQGCPYGEVL EHHDPLPAKL AQEDEQKPEP GLAQKLRRVG ENSTTRP00000009075/1-626 FPSLGPMALA EQGCPYGEVL EHHDPLPAKL AQEDEQKPEP GLAQKLCRAG bmy_08376T0/1-554 FPSLGPVALA EQGCPYREVL EHHDPLPAKL AQEDEQKPEP GLAQKLRRAG 551 600 ENSP00000321424/1-639 AMLLKVPLML TFLYLFVCSL DMLSSAFQLA GGKVAGDIFK DNAILSNPVA ENSBTAP00000027121/1-639 VTLLKVPLML SFLYLFVCSL DVLSSAFQLA GGKVAGDIFK DNAILSNPVA BACU002878/1-1091 LTLLKVPLML VFLYLFVCSL DVLSSAFQLA GGKVAGDIFK DNAILSNPVA ENSTTRP00000009075/1-626 LT-LKVPLML VFLYL-VCSL DVLSSAFQLA GGKVAGDIFK DNAILSNPVA bmy_08376T0/1-554 LTLLKVPLML VFLYLFVCSL D--------- ---------- DNAILSNPVA 601 650 ENSP00000321424/1-639 GLVVGILVTV LVQSSSTSTS IIVSMVSSGL LEVSSAIPII MGSNIGTSVT ENSBTAP00000027121/1-639 GLVVGILVTV LVQSSSTSTS IVVSMVSSGL LEVSSAIPII MGSNIGTSVT BACU002878/1-1091 ALVVGILVTV LVQSSSTSTS IVVSMVSSGL LEVSSAIPII MGSNIGTSVT ENSTTRP00000009075/1-626 ALVVGILVTV LVQSSSTSTS IVVSMVSSGL LEVSSAIPII MGSNIGTSVT bmy_08376T0/1-554 ALVVGILVTV LVQSSSTSTS IVVSMVSSGL LEVSSAIPII MGSNIGTSVT 651 700 ENSP00000321424/1-639 NTIVALMQAG DRTDFRRAFA GATVHDCFNW LSVLVLLPLE AATGYLHHIT ENSBTAP00000027121/1-639 NTIVALMQAG DRTDFRRAFA GATVHDCFNW LSVLVLLPLE AATGYLHCIT BACU002878/1-1091 NTIVALMQAG DRTDFRRAFA GATVHDCFNW LSVLVLLPLE AATGYLHHIT ENSTTRP00000009075/1-626 NTIVALMQAG DRTDFRRAFA GATVHDCFNW LSVLVLLPLE AATGYLHHIT bmy_08376T0/1-554 NTIVALMQAG DRTDFRRAFA GATVHDCFNW LSVLVLLPLE AATGYLHHIT 701 750 ENSP00000321424/1-639 RLVVASFNIH GGRDAPDLLK IITEPFTKLI IQLDESVITS IATGDESLRN ENSBTAP00000027121/1-639 RLVVASFNIH GGRDAPDLLK IITEPFTKLI IQLDKSVITS LASGDESLRN BACU002878/1-1091 RLVVASFNIR GGRDAPDLLK IITEPFTKLI IQLDKSVITS IATGDESLRN ENSTTRP00000009075/1-626 RLVVASFNIR GGHDAPDLLK IITEPFTKLI IQLDKSVITS IATGDESLRN bmy_08376T0/1-554 RLVVASFNIH GGRDAPDLLK IITEPFTKLI IQLDKSVITS IATGDESLRN 751 800 ENSP00000321424/1-639 HSLIQIWCHP DSLQAPTSMS RAEANSSQTL GNATMEKCNH IFVDTGLPDL ENSBTAP00000027121/1-639 HSLIRVWCYP DPTEVPTPMP RAEANTSRML RNATLEKCNH IFVDTGLPDL BACU002878/1-1091 HSLIRIWCHP NPMEVPSRRP RAEANTSRML GNATMEKCGH IFVDTGLPDL ENSTTRP00000009075/1-626 HSLIRIWCHP NPMEVPSRRP RAEASTSRML GNATMEKCSH IFVDTGLPDL bmy_08376T0/1-554 HSLIRIWCHP NPMEVPSRRP RAEANTSRML GNATMEKC-- ---------- 801 850 ENSP00000321424/1-639 AVGLILLAGS LVLLCTCLIL LVKMLNSLLK GQVAKVIQKV INTDFPAPFT ENSBTAP00000027121/1-639 AVGLILLAGS LALLCTCLIL LVKMLNSLLK GQVAKVIQKV INTDFPTPFT BACU002878/1-1091 AVGLILLAGS LVLLCTCLIL LVKMLNSLLK GQVAKVIQKV INTDFPTPFT ENSTTRP00000009075/1-626 AVGLILLAGS LVLLCTCLIL LVKMLNSLLK GQVAKVIQMI INTDFPP--- bmy_08376T0/1-554 ---------- ---------- ---------- ---------- ---------- 851 900 ENSP00000321424/1-639 WVTGYFAMVV GASMTFVVQS SSVFTSAITP LIGLGVISIE RAYPLTLGSN ENSBTAP00000027121/1-639 WATGYFAMVV GASMTFVVQS SSVFTSAITP LIGLGVISIE RAYPLTLGSN BACU002878/1-1091 WATGYFAMVV GAGMTFVVQS SSVFTSAITP LIGLGVISLE RAYPLTLGAN ENSTTRP00000009075/1-626 -LTGTY-LMV GA----MVQS SSVF-SAIT- LIGLGVISVE RAYPLTLGAN bmy_08376T0/1-554 ----YFAMVV GAGMTFVVQS SSVFTSAITP LIGLGVISLE RAYPLTLGAN 901 950 ENSP00000321424/1-639 IGTTTTAILA ALASPREKLS SAFQIALCHF FFNISGILLW YPVPCTRLPI ENSBTAP00000027121/1-639 IGTTTTAILA ALASPREKLS SAFQIALCHF FFNISGILLW YPMPCTRLPI BACU002878/1-1091 IGTTTTAILA ALASPREKLS SAFQIALCHF FFNISGILLW YPVPCTRLPI ENSTTRP00000009075/1-626 IGTTTTAILA ALASPREKLS SAFQIALCHF FFNISGILLW YPVPCTRLPI bmy_08376T0/1-554 IGTTTTAILA ALASPREKLS SAFQIALCHF FFNISGILLW YPVPCTRLPI 951 1000 ENSP00000321424/1-639 RMAKALGKRT AKYRWFAVLY LLVCFLLLPS LVFGISMAGW QVMVGVGTPF ENSBTAP00000027121/1-639 RMAKALGKRT AKYRWFAVLY LLLCFLLLPS MVFGLSMAGW RAMVGVGAPF BACU002878/1-1091 CMAKALGKRT AKYRWFAVLY LLLCFLLLPS LVFGISMAGW QAMVGVGTPF ENSTTRP00000009075/1-626 RMAKALGKRT AKYRWFAVLY LLLCFLLLPS LVFGISMAGW QAMVGVGTPF bmy_08376T0/1-554 RMAKALGKRT AKYRWFAVLY LLLCFLLLPS LVFGISMAGW QAMVGVGTPF 1001 1050 ENSP00000321424/1-639 GALLAFVVLI NVLQSRSPGH LPKWLQTWDF LPRWMHSLKP LDHLITRATL ENSBTAP00000027121/1-639 GALLAFVVLV SVLQSRSPGC LPKWLQTWDF LPLWMHSLKP LDRLITRATL BACU002878/1-1091 GALLAFVVLV SMLQSRSPGR LPKWLQTWDF LPRWMHSLQP LDHLITRATL ENSTTRP00000009075/1-626 GALLAFVVLV SMLQSRSPGR LPKWLQTWDF LPHWMHSLQP LDHLITRATL bmy_08376T0/1-554 GALLAFVVLV SMLQSRSPGR LPKWLQTWDF LPRWMHSLQP LDHLITRATL 1051 1100 ENSP00000321424/1-639 CCARPEPRSP PLPPRVFLEE LPPATPSPRL ALPAHHNATR L ENSBTAP00000027121/1-639 CCARAEPRSP PLPARVFLEE LPPATPSPHL AMTHHHNATR L BACU002878/1-1091 CCARPEPRSP PLPARVFLEE LPPATPSPRL AMPSHHNATH L ENSTTRP00000009075/1-626 CCARPEPRSP PLPARVFLED LPPATPSPRL AMPNHHNATR L bmy_08376T0/1-554 CCARSEPRSP PLPARVFLEE LPPATPSPRL AMPSHHNATH L