KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:31:25 2014 Check: 00 .. Name: bmy_07258T0/1-347 Len: 517 Check: 3361 Weight: 1.00 Name: ENSP00000363804/1-479 Len: 517 Check: 1315 Weight: 1.00 Name: ENSBTAP00000027125/1-477 Len: 517 Check: 9180 Weight: 1.00 Name: ENSTTRP00000010085/1-441 Len: 517 Check: 7675 Weight: 1.00 Name: BACU007358/1-476 Len: 517 Check: 7605 Weight: 1.00 // 1 50 bmy_07258T0/1-347 MRQPPGESDM AVSDALLPSF STFASGPAGR EKTLRPAGAP NNRWREELSH ENSP00000363804/1-479 MRQPPGESDM AVSDALLPSF STFASGPAGR EKTLRQAGAP NNRWREELSH ENSBTAP00000027125/1-477 ---------M AVSDALLPSF STFASGPAGR EKTLRPAGAP NNRWREELSH ENSTTRP00000010085/1-441 ---------M AVSDALLPSF STFASGPAGR EKTLRPAGAP NNRWREELSH BACU007358/1-476 ---------M AVSDALLPSF STFASGPAGR EKTLRPAGAP NNPWQEELSH 51 100 bmy_07258T0/1-347 MKRLPPVLPG RPYDLAAATV ATDLESGGVG AACGSSNPAL LPRRETEEFN ENSP00000363804/1-479 MKRLPPVLPG RPYDLAAATV ATDLESGGAG AACGGSNLAP LPRRETEEFN ENSBTAP00000027125/1-477 MKRLPPVLPG RPYDLAAATV ATDLESGGVG AACGSSNPAL LPRRETEEFN ENSTTRP00000010085/1-441 MKRLPPVLPG RPYDLAAATV ATDLESGGVG AACGSSNPAL LPRRETEEFN BACU007358/1-476 MKRLPPVLPG RPYDLAAATV ATDLESGGVG AACGSSNPAL LPRRETEEFN 101 150 bmy_07258T0/1-347 DLLDLDFILS NSLSH-QESV AATVSSSASA SSSSSPSSSG PASAPSTCSF ENSP00000363804/1-479 DLLDLDFILS NSLTHPPESV AATVSSSASA SSSSSPSSSG PASAPSTCSF ENSBTAP00000027125/1-477 DLLDLDFILS NSLSH-QESV AATVSSSASA SSSSSPSSSG PASAPSTCSF ENSTTRP00000010085/1-441 DLLDLDFILS NSLSH-QESV AATVSSSASA SSSSSPSSSG PASAPSTCSF BACU007358/1-476 DLLDLDFILS NSLSH-QESV AATVSSSASA SSSSSPSSSG PASAPSTCSF 151 200 bmy_07258T0/1-347 SYPIRAGGDP GV-APGSTGG GLLYGRESAP PPTAPFNLAD INDVSPSGGF ENSP00000363804/1-479 TYPIRAGNDP GV-APGGTGG GLLYGRESAP PPTAPFNLAD INDVSPSGGF ENSBTAP00000027125/1-477 SYPIRAGGDP GVAAPGGAGG GLLYGRESAP PPTAPFNLAD INDVSPSGGF ENSTTRP00000010085/1-441 SYPIRAGGDP GV-APGSTGG GLLYGRESAP PPTAPFNLAD INDVSPSGGF BACU007358/1-476 SYPIRAGGDP GV-APGSTGG GLLYGRESAP PPTAPFNLAD INDVSPSGGF 201 250 bmy_07258T0/1-347 VAELLRPELD PVYIPPQQPQ PPGGGLMGKF VLKASLSAPG SEYGSPSVIS ENSP00000363804/1-479 VAELLRPELD PVYIPPQQPQ PPGGGLMGKF VLKASLSAPG SEYGSPSVIS ENSBTAP00000027125/1-477 VAELLRPELD PVYIPPQQPQ PPGGGLMGKF VLKASLSAPG SEYGSPSVIS ENSTTRP00000010085/1-441 VAELLRPELD PVYIPPQQPQ PPGGGLMGKF VLKASLSAPG SEYGSPSVIS BACU007358/1-476 VAELLRPELD PVYIPPQQPQ PPGGGLMGKF VLKASLSAPG SEYGSPSVIS 251 300 bmy_07258T0/1-347 VSKGSPDGSH PVVVAPYSGG PPRMCPKIKQ EAVSSCTVGR SLDAHLGTGP ENSP00000363804/1-479 VSKGSPDGSH PVVVAPYNGG PPRTCPKIKQ EAVSSCT--- ----HLGAGP ENSBTAP00000027125/1-477 VSKGSPDGSH PVVVAPYSGG PPRMCPKIKQ EAVSSCTVGR PLEAHLGTGP ENSTTRP00000010085/1-441 VSKGSPDGSH PVVVAPYSGG PPRMCPKIKQ EAVSSCT--- ----HLGTGP BACU007358/1-476 VSKGSPDGSH PVVVAPYSGG PPRMCPKIKQ EAVSSCTVGR SLDAHLGTGP 301 350 bmy_07258T0/1-347 PLSNGT---- ---------- ---------- ---------- ---------- ENSP00000363804/1-479 PLSNGHRPAA HDFPLGRQLP SRTTPTLGLE EVLSSRDCHP ALPLPPGFHP ENSBTAP00000027125/1-477 PLSNGHRPPA HDFPLGRQLP SRTTPTLGAE ELLSSRDCHP ALPLPPGFHP ENSTTRP00000010085/1-441 PLSNGHRPPA HDFPLGRQLP SRTTPTLGAE ELLSSRDCHP ALPLPPGFHP BACU007358/1-476 PLSNGHRPPA HDFPLGRQLP SRTTPTLGAE ELLSSRDCHP ALPLPPGFHP 351 400 bmy_07258T0/1-347 ---------- ------VILP CHY------- ---------- ---------- ENSP00000363804/1-479 HPGPNYPSFL PDQMQPQVPP LHYQ------ ---------- ---------- ENSBTAP00000027125/1-477 HPGPNYPPFL PDQMQPQVPP LHYQ------ ---------- ---------- ENSTTRP00000010085/1-441 HPGPNYPPFL PDQLQPQVPP LHYQGQSQGF IVGAGEPRPG GAHRMTLTPP BACU007358/1-476 HPGPNYPPFL PDQLQPQVPP LHYQ------ ---------- ---------- 401 450 bmy_07258T0/1-347 ---------- ---PQASIPT RGPTTLP--- ---------S CPTSCSRRSH ENSP00000363804/1-479 ----ELMPPG SCMPEEPKPK RGRRSWPRKR TATHTCDYAG CGKTYTKSSH ENSBTAP00000027125/1-477 ----ELMPPG SCMPEEPKPK RGRRSWPRKR TATHTCDYAG CGKTYTKSSH ENSTTRP00000010085/1-441 SSPLELMPPG SCMPEEPKPK RGRRSWPRKR TATHTCDYAG CGKTYTKSSH BACU007358/1-476 ----ELMPPG SCMPEEPKPK RGRRSWPRKR TATHTCDYAG CGKTYTKSSH 451 500 bmy_07258T0/1-347 -----RSITK VSPRDS---- ---------- ---------- ---------- ENSP00000363804/1-479 LKAHLRTHTG EKPYHCDWDG CGWKFARSDE LTRHYRKHTG HRPFQCQKCD ENSBTAP00000027125/1-477 LKAHLRTHTG EKPYHCDWDG CGWKFARSDE LTRHYRKHTG HRPFQCQKCD ENSTTRP00000010085/1-441 LKAHLRTHT- ---------- ---------- ---------- ---------- BACU007358/1-476 LKAHLRTHTG EKPYHCDWDG CGWKFARSDE LTRHYRKHTG HRPFQCQKCD 501 550 bmy_07258T0/1-347 ---------- ------- ENSP00000363804/1-479 RAFSRSDHLA LHMKRHF ENSBTAP00000027125/1-477 RAFSRSDHLA LHMKRHF ENSTTRP00000010085/1-441 ---------- ------- BACU007358/1-476 RAFSRSDHLA LHMKRHF