KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:31:25 2014 Check: 00 .. Name: ENSP00000368464/1-1368 Len: 1411 Check: 749 Weight: 1.00 Name: ENSBTAP00000027134/1-1368 Len: 1411 Check: 2984 Weight: 1.00 Name: ENSTTRP00000010043/1-1354 Len: 1411 Check: 4520 Weight: 1.00 Name: bmy_05686T0/1-1387 Len: 1411 Check: 7485 Weight: 1.00 Name: BACU006663/1-1199 Len: 1411 Check: 780 Weight: 1.00 // 1 50 ENSP00000368464/1-1368 ---------- ---------M ASWLYECLCE AELAQYYSHF TALGLQKIDE ENSBTAP00000027134/1-1368 ---------- ---------M TSWLYECLYE AELAQYYPHF TALGLQKIDE ENSTTRP00000010043/1-1354 ---------- ---------M TSWLYECLCE AELAQYYPHF TALGLQKIDE bmy_05686T0/1-1387 MIIRVGLGNV GVYRNPFTKM TSWLYECLCE AELAQYYPHF TALGLQKIDE BACU006663/1-1199 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000368464/1-1368 LAKITMKDYS KLGVHDMNDR KRLFQLIKII KIMQEEDKAV SIPERHLQTS ENSBTAP00000027134/1-1368 LANVTMKDYS KLGVHDMNDR KRLFQLIKII KIMQEEDKAV SSPDSRLQTS ENSTTRP00000010043/1-1354 LANVTMKDYS KLGVHDMNDR KRLFQLIKII KIMQEEDKAV SSPEYPLQTS bmy_05686T0/1-1387 LANVTMKDYS KLGVHDMNDR KRLFQLIKII KIMQEEDKAV SSPEYPLQTS BACU006663/1-1199 -----MKDYS KLGVHDMNDR KRLFQLIKII KIMQEEDKAV SSPEYPLQTS 101 150 ENSP00000368464/1-1368 SLRIKSQELR SGPRRQLNFD SPADNKDRNA SNDGFEMCSL SDFSANEQKS ENSBTAP00000027134/1-1368 NLCVKPQKSR SGPRRQLHFD SPADNKDRTT SNNQFELCDL SDFSASEQKS ENSTTRP00000010043/1-1354 SLCIKPQKSR SGPRRQLHFD SPADSKDRTT SSNQFELCNL SHLSASEQKS bmy_05686T0/1-1387 SLCIKPQKSR SGPRRQLHFD SPADNKDRTT SHNQFELCDL SHLSASEQKS BACU006663/1-1199 SLCIKPQKSR SGPRRQLHFD SPADNKDRTT SHNQFELCDL SHLSASEQKS 151 200 ENSP00000368464/1-1368 TYLKVLEHML PDDSQYHTKT GILNATAGDS YVQTEISTSL FSPNYLSAIL ENSBTAP00000027134/1-1368 NYIKVLEHML PDDSQYHTQT GILNAAAAHS NIQKAAKISP FSSNHFSPVQ ENSTTRP00000010043/1-1354 SYLKVLEHLL PDDSQYCTKT RILNATAADS YLQEETNTSL FSSNHFSPIQ bmy_05686T0/1-1387 SYLKVLEHLL PDDSQYCTKT RILNATAADS YLQEETNTSL FSSNHFSPIQ BACU006663/1-1199 SYVKVLEHLL PDDSQYCTKT RILNATAADS YLQEETNTSL FSSNHFSPIQ 201 250 ENSP00000368464/1-1368 GDCDIPIIQR ISHVSGYNYG IPHSCIR--- ---------- -QNTSEKQNP ENSBTAP00000027134/1-1368 GDCDSSVIQR VSHVSGYNYG IPHSYIR--- ---------- -QNTSEKENP ENSTTRP00000010043/1-1354 GDCDSPVIRR VSHVSGYNYG IPHSYIS--- ---------- -QNTSEKENP bmy_05686T0/1-1387 GDCDSPVMQR VSHVSGYNYG IPHSYISFIV LLKIKAHLYI SQNPSEKENP BACU006663/1-1199 GDCDSPIMQR VSHVSGYNYG IPHSYIR--- ---------- ---------- 251 300 ENSP00000368464/1-1368 WTEMEKIRVC VRKRPLGMRE VRRGEINIIT VEDKETLLVH EKKEAVDLTQ ENSBTAP00000027134/1-1368 WTEMEKIRVC VRKRPLGMRE VRRGEINIIT VKDKETLLVH EKKEAVDLTQ ENSTTRP00000010043/1-1354 WNEMEKIRVC VRKRPLGMRE VRRGEINIIT VEDKETLLVH EKKEAVDLTQ bmy_05686T0/1-1387 WTEMEKIRVC VRKRPLGMRE VRRGEINIIT VKDKETLLVH EKKEAVDLTQ BACU006663/1-1199 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000368464/1-1368 YILQHVFYFD EVFGEACTNQ DVYMKTTHPL IQHIFNGGNA TCFAYGQTGA ENSBTAP00000027134/1-1368 YILQHVFYFD EIFDEACTNQ DIYMKTTHPL IQHIFNGGNA TCFSYGQTGA ENSTTRP00000010043/1-1354 YILQHVFYFD EVFDEVCTNQ DVYMKTTHPL IQHIFNGGNA TCFAYGQTGA bmy_05686T0/1-1387 YILQHVFYFD EVFDEACTNQ DVYMKTTHPL IQHIFNGGNA TCFAYGQTGA BACU006663/1-1199 ---------- ---------- ---------- -------GNA TCFAYGQTGA 351 400 ENSP00000368464/1-1368 GKTYTMIGTH ENPGLYALAA KDIFRQLEVS QPRKHLFVWI SFYEIYCGQL ENSBTAP00000027134/1-1368 GKTYTMIGTH QNPGLYALAA RDIFRQLEVS QPRRHLFVWI SFYEIYCGQL ENSTTRP00000010043/1-1354 GKTYTMIGTH QNPGLYALAA KDIFRQLEVS QPRRHCFVWI SFYEIYCGQL bmy_05686T0/1-1387 GKTYTMIGTH QNPGLYALAA KDIFRQLEVS QPRRHCFVWI SFYEIYCGQL BACU006663/1-1199 GKTYTMIGTH QNPGLYALAA KDIFRQLEVS QPRRHCFVWI SFYEIYCGQL 401 450 ENSP00000368464/1-1368 YDLLNRRKRL FAREDSKHMV QIVGLQELQV DSVELLLEVI LKGSKERSTG ENSBTAP00000027134/1-1368 YDLLNRRKRL FAREDSKHVV QIVGLRELQV DSVELLLEVI LKGSKERSTR ENSTTRP00000010043/1-1354 YDLLNRRKRL FAREDSKHVV QIVGLRELQV DSVELLLEVI LKGSKERSTG bmy_05686T0/1-1387 YDLLNRRKRL FAREDSKHVV QIVGLRELQV DSVELLLEVI LKGSKERSTG BACU006663/1-1199 YDLLNRRKRL FAREDSKHVV QIVGLRELQV DSVELLLEVI LKGSKERSTG 451 500 ENSP00000368464/1-1368 ATGVNADSSR SHAVIQIQIK DSAKRTFGRI SFIDLAGSER AADARDSDRQ ENSBTAP00000027134/1-1368 ATGVNADSSR SHAIIQIQIK DSAKRTFGRI SFIDLAGSER AADARDSDRQ ENSTTRP00000010043/1-1354 ATGVNADSSR SHAIIQIQIK DSAKRTFGRI SFIDLAGSER AADARDSDRQ bmy_05686T0/1-1387 ATGVNADSSR SHAIIQIQIK DSAKRTFGRI SFIDLAGSER AADARDSDRQ BACU006663/1-1199 ATGVNADSSR SHAIIQIQIK DSAKRTFGRI SFIDLAGSER AADARDSDRQ 501 550 ENSP00000368464/1-1368 TKMEGAEINQ SLLALKECIR ALDQEHTHTP FRQSKLTQVL KDSFIGNAKT ENSBTAP00000027134/1-1368 TKMEGAEINQ SLLALKECIR ALDQEHTHTP FRQSKLTQVL KDSFIGNAKT ENSTTRP00000010043/1-1354 TKMEGAEINQ SLLALKECIR ALDQEHTHTP FRQSKLTQVL KDSFIGNAKT bmy_05686T0/1-1387 TKMEGAEINQ SLLALKECIR ALDQEHTHTP FRQSKLTQVL KDSFIGNAKT BACU006663/1-1199 TKMEGAEINQ SLLALKECIR ALDQEHTHTP FRQSKLTQVL KDSFIGNAKT 551 600 ENSP00000368464/1-1368 CMIANISPSH VATEHTLNTL RYADRVKELK KGIKCCTSVT SRNRTSGNS- ENSBTAP00000027134/1-1368 CMIANISPSH VATEHTLNTL RYADRVKELK KGIKCCTPAN SRNRTSGNSS ENSTTRP00000010043/1-1354 CMIANISPSH VATEHTLNTL RYADRVKELK KGIKCCTSAS SRNRTSGNS- bmy_05686T0/1-1387 CMIANISPSH VATEHTLNTL RYADRVKELK KGIKCCTSAS SRNRTSGNS- BACU006663/1-1199 CMIANISPSH VATEHTLNTL RYADRVKELK KGIKCCTSAS SRNPTSGNS- 601 650 ENSP00000368464/1-1368 --SPKRIQSS PGALSEDKCS PKKVKLGFQQ SLTVAAPGST RGKVHPLTSH ENSBTAP00000027134/1-1368 NASPKRIQSS PVALPGDKYS PKKVKLGLQQ PLTV-PSGSM RGKAHPLASH ENSTTRP00000010043/1-1354 --SPKRIQSS PVALPGDKCS PKKVKLGLQQ SLTV-APDST RTKAHPLASH bmy_05686T0/1-1387 --SPKRIQSS PVALPGDKCS PKKVKLGLQQ SLTV-APGST RTKAHPLASH BACU006663/1-1199 --SPKRIQSS PVALPGDKCS PKKVKLGLQQ SLTV-APGST RTKAHPLASH 651 700 ENSP00000368464/1-1368 PPNIPFTSAP KVSGKRGGSR GSPSQEWVIH ASPVKGTVRS GHVAKKKPEE ENSBTAP00000027134/1-1368 PANIPFASVP KVPGREGGSQ GSPPREWVIQ TSSSKGTMLS GHVAIKRAEE ENSTTRP00000010043/1-1354 PANIPFASVP KAPGKRGGSR GSPPQEWVIQ TSSIKGTMRP GHLAKKGAEE bmy_05686T0/1-1387 PANIPFASVP KVPGKRGGSR GSPPQEWVTQ TSSIKGTMRS GHLAKKRAEE BACU006663/1-1199 PANIPFASVP KVPGKRGGSR GSPPQEWVIQ TSSIKGTMRS GHLAKKRAEE 701 750 ENSP00000368464/1-1368 SAPLCSEKNR MGNKTVLGWE SRASGPGEGL VRGKLSTKCK KVQTVQPVQK ENSBTAP00000027134/1-1368 SAALCSEKNP IGNKTPLGWG SRAPGPGGDL VRGKPPSRCK RVQTVQPVQK ENSTTRP00000010043/1-1354 SAASCSEKNP IGNKTALGWG SRAPGPGEEA VRGKLPSRCK KVQTVQPVQK bmy_05686T0/1-1387 SAALCSEKNP IGNKTALGWG SRAPGPGGEV VRGKLPSRCK KAQTVQPVQK BACU006663/1-1199 SAALCSEKNP VGNKTALGWG SRAPGPGGEA VRGKLPSRCK KAQTVQPVQK 751 800 ENSP00000368464/1-1368 QLVSRVELSF GNAHHRAEYS QDSQRGTPAR PASEAWT-NI PPHQKEREEH ENSBTAP00000027134/1-1368 QLVSRGELSF GSAQRLVEYG QGSKVGALSW PASEAWTNNI PVQQEAREEH ENSTTRP00000010043/1-1354 QLVSRVELSF GNVHHLVEYS QGSKGGTPTR PASEAWT-DI PPHQKEREEH bmy_05686T0/1-1387 QLVSRVELSF GNVHHLVEYS QGSKGGTPTR PASEAWT-NI PPRQKEREEH BACU006663/1-1199 QLVSRVELSF GNVHHLVEYS QGSKGGTPTR PASEAWT-NI PPHQKEREEH 801 850 ENSP00000368464/1-1368 LRFYHQQFQQ PPLLQQKLKY QPLKRSLRQY RPPEGQLTNE TPPLFHSY-S ENSBTAP00000027134/1-1368 LRFYHQQFQQ PPLLQQKLQY QPLERFLCRS RPPEGQLQSD ILPPFHPHRA ENSTTRP00000010043/1-1354 LRFYHQQFQQ PPLLQQKLKH QPLERFLCQS RPPEGQLQND TPPPFHSC-C bmy_05686T0/1-1387 LRFYHQQFQQ PPLLQQKLKY QPLERFLCQS RPPEGQLQND TPPPFHSC-C BACU006663/1-1199 LRFYHQQFQQ PPLLQQKLKY QPLERFLCQS RPPEGQLQND TPPPFHSC-C 851 900 ENSP00000368464/1-1368 ENHDGA---Q VEELDDSDFS EDSFSHISSQ RATKQRNTLE NSEDSFFLHQ ENSBTAP00000027134/1-1368 ESQDGAQVPQ AEDPDDSDFS EDSFSHASCQ RTTKQGKSPE NSEGSFFLHQ ENSTTRP00000010043/1-1354 ESHDGA---Q AEDLDDSDFS EDSFSHVSCQ RTTKQGNTLE NSEGSFFLHQ bmy_05686T0/1-1387 ESHDGA---Q AEDLDDSDFS EDSFSHVSCQ RTTKQGNTLE NSEGSFFLHQ BACU006663/1-1199 ESHDGA---Q AEDLDDSDFS EDSFSHVSCQ RTAKQGNTLE NSEGSFFLHQ 901 950 ENSP00000368464/1-1368 TWGQGPEKQV AERQQSLFSS PR-TGDKKDL TKSWVDSRDP INHRRAALDH ENSBTAP00000027134/1-1368 R-EQGPEEQV AERQQSLFFS P--DGDEEGV TRSWVYSRDP AGHRRIALDH ENSTTRP00000010043/1-1354 R-EQGPEEQV AERRQSLCFS PRTEGDEKGL TGSWMYSRDP ASH-RIALDH bmy_05686T0/1-1387 R-EQGPEEQV AERRQSLFFS PRTEGDEKGL TGSWMYSRDP ASH-RIALDH BACU006663/1-1199 R-EQGPEEQV AERRQSLFFS PRTEGDEKGL TGSWIYSRDP ASH-RIALDH 951 1000 ENSP00000368464/1-1368 SCSPSKGPVD WSR-ENSTSS GPSPRDSLAE KPYCSQVDFI YRQERGGGSS ENSBTAP00000027134/1-1368 GHSPGQVPLD WSGEEDLDSS GPSPREDLAG KSYCAQVDSV YDRERGGGPA ENSTTRP00000010043/1-1354 GHSPSQVPLD WSREEDSTSS GPPPGENLAE KPYCSQADFV YNQKRGGGPA bmy_05686T0/1-1387 GRSPSQVPLD WSREEDSTSS GPPPRENLAE KPYCSQVGFV YNQKRGGSPA BACU006663/1-1199 GRSPSQVPLD WSREEDATSS GPPPRENLAE KPYCSQVGFV YNQKRGGSPA 1001 1050 ENSP00000368464/1-1368 FDLRKDASQS EVSGENEGNL PSPEEDGFTI SLSHVAVPGS PDQRDTVTTP ENSBTAP00000027134/1-1368 FDLRQEAFRS EVPGQAEGSL PSLEDDGFTC SLSHIAVPGS PDQRDTVSTP ENSTTRP00000010043/1-1354 FDLRQDAFKN EVPRQAEGSS PSLEEDGCTF SLSHITVPGS PDQRDTVSTP bmy_05686T0/1-1387 FDLRQDAFKN EAPRQAEGSS PSLEEDGCTF SLSHVTVPGS PDQRDTVSTP BACU006663/1-1199 FDLRQDAFKN EAPRQAEGSS PSLEEDGCTF SLSHVTVPGS PDQRDTVSTP 1051 1100 ENSP00000368464/1-1368 LREVSADGPI QVTSTVKNGH AVPGEDPRGQ LGTHAEYASG LMSPLTMSLL ENSBTAP00000027134/1-1368 LREVSEDSPI LETRTMKNSN PFQGDDSKGE LGTCSEYASG LMAPLTMSLL ENSTTRP00000010043/1-1354 LREVSEDIPT VATRTMKNSN PFQGEDSRGE LGTCSEHASE LMAPLTMSLL bmy_05686T0/1-1387 LREVSEDSPT VATRTMKNSN PFQGEDSRGE LGTCSEHASG LMASLTVSLL BACU006663/1-1199 LREVSEGSPT VATRTTKNSN PFQGEDSRGG SGTCSEHASG LMASLTVSLL 1101 1150 ENSP00000368464/1-1368 ENPDNEGSPP SEQLVQDGAT HSLVAESTGG PVVSHTVPSG DQEAALPVSS ENSBTAP00000027134/1-1368 ESLDDGGAPS WEQPAQAGTA HGLVAVDTEG PAMGHTVSSG DPEAVLPTSS ENSTTRP00000010043/1-1354 ESPDDEGSPP LEQSAQDGAA HSLVAADTGG QVVGHTVSSG DQEADLPMSS bmy_05686T0/1-1387 ESPNDEGSPH LEQSAQDGAA HSLVAADTGG PAVGHTVSSG DQEADLPMSS BACU006663/1-1199 ESPDDEGSPH LEQPAQDGAA HSLVAADTGG PAVGHTVSSG DQEADLPMSS 1151 1200 ENSP00000368464/1-1368 ATRHLWLSSS PPDNKPGGDL PALSPSPIRQ HPADKLPSRE ADLGEACQSR ENSBTAP00000027134/1-1368 ATEHLWLSSS PPDDKPGGSL PALSPSPIRQ RPPDELPSGE ADPGEACQSR ENSTTRP00000010043/1-1354 ATEHLWLSSS PPDSKPGGDL PALSLSPIHQ HPPDKLPNRE ADLGEPCQSR bmy_05686T0/1-1387 TTEHLWLSSS PPDSKPGGDL PALSLSPIHQ HPPDKLPNRE ADLGAPCQSR BACU006663/1-1199 TTEHLWLSSS PPDSKPGGDL PALSLSPIHQ HPPDKLPNRE ADLGEPCQSR 1201 1250 ENSP00000368464/1-1368 ETVLFSHEHM GSEQYDADAE ETGLDGSWGF PGKPFTTIHM GVPHSGPTLT ENSBTAP00000027134/1-1368 GTTLFSRGH- ----RDANA- ETELDGSQGF LGKPFLTLHP GGPHAGPTLT ENSTTRP00000010043/1-1354 ETALFSQGH- ----YDGDA- ETELGCSQGF PEKPCLTIHT GGPHSGPTFT bmy_05686T0/1-1387 ETALFSQGH- ----YDGNA- ETELGCSQGF PEKPFLTIHT GGPHSGPTLT BACU006663/1-1199 ETALFSQRH- ----YDGDA- ETELGCSQGF PEKPFLTIHT GGPHSGPTLT 1251 1300 ENSP00000368464/1-1368 PRTGSSDVAD QLWAQERKHP TRLGWQEFGL STDPIKLPCN SENVTWLKPR ENSBTAP00000027134/1-1368 PRAGNSDVAD QPRAQERKQP TGPSWPELGF STDPITLSCY KEDIAWLKHR ENSTTRP00000010043/1-1354 PQTGSSDVAD QPWAQERKHL VGLGWQELDL STDPIKLSCY NEDITWLKRR bmy_05686T0/1-1387 PQTGSSDVAG QPWAQERKHL AGLGWQELGL STDPIKLSCY NEDIVWLKHR BACU006663/1-1199 TQAGSSDVAG QPWAQERKHL AGLGWQELGL STDPIKLSCY NEDIAWLKRR 1301 1350 ENSP00000368464/1-1368 PISRCLARPS SPLVPSCSPK TAGTLRQPTL EQAQQVVIRA HQEQLDEMAE ENSBTAP00000027134/1-1368 PIPRSLARPG SPLAASCSPE TAGTLRQPAL GHAQQVVIQA HQEQLDEMAE ENSTTRP00000010043/1-1354 PIPRYLARLG -------SPK TARTLRQPIL GHAQQVLIRA HQEQLDEMAK bmy_05686T0/1-1387 PIPRYLARLG -------SPK TARTLRQPVL GHAQQVLIRA HQEQLDEMAK BACU006663/1-1199 PIPR------ ---------- ---------- ----QVLIRA HQEQLDEMAK 1351 1400 ENSP00000368464/1-1368 LGFKEETLMS QLASNDFEDF VTQLDEIMVL KSKCIQSLRS QLQLYLTCHG ENSBTAP00000027134/1-1368 LGFKEETLMS QLAPTDFEGF VIQLDEIMVL KSKCIQSLRS QLQLYLACHK ENSTTRP00000010043/1-1354 LGFKEETLMS QLAPNDFEDF VTQLDEIMAL KSKCIQSLRS QLQLYLACHR bmy_05686T0/1-1387 LGFKEETLMS QLAPNDFEDF VTQLDEIMAL KSKCIQSLRS QLQLYLACHR BACU006663/1-1199 LGFKEETLMS QLAPNDFEDF VTQLDEIMAL KSKCIQSLRS QLQLYLACHR 1401 1450 ENSP00000368464/1-1368 PTAAPEGTVP S ENSBTAP00000027134/1-1368 PAAGPERTAV S ENSTTRP00000010043/1-1354 PAAAPERTAV S bmy_05686T0/1-1387 PAAAPGRTAV S BACU006663/1-1199 PAAAPERTAV S