KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:31:27 2014 Check: 00 .. Name: ENSBTAP00000027135/1-1066 Len: 1070 Check: 7584 Weight: 1.00 Name: ENSP00000389913/1-1056 Len: 1070 Check: 9385 Weight: 1.00 Name: ENSTTRP00000013863/1-1055 Len: 1070 Check: 9374 Weight: 1.00 Name: bmy_11360T0/1-603 Len: 1070 Check: 3847 Weight: 1.00 Name: BACU008399/1-1062 Len: 1070 Check: 722 Weight: 1.00 // 1 50 ENSBTAP00000027135/1-1066 MLSGVENGLD PRAAIPVIKK KLVGSVKALQ KQYVSSDTVV TSEDGDANTM ENSP00000389913/1-1056 MLSVVENGLD PQAAIPVIKK KLVGSVKALQ KQYVSLDTVV TSEDGDANTM ENSTTRP00000013863/1-1055 MLSAVENGLG PRAAIPVIKK KLVGSVKALQ KQYVSLDTAV TSEDGDANSM bmy_11360T0/1-603 ---------- ---------- ---------- ---------- ---------- BACU008399/1-1062 MLSAVENGLD PRAAIPVIKK KLVGSVKALQ KQYVSLDTAV TSEDGDANSM 51 100 ENSBTAP00000027135/1-1066 CSALEAVFIH GLHAKHIRAE AGGKRKKGAH QKPLPQPVFW PLLKAVTHKH ENSP00000389913/1-1056 CSALEAVFIH GLHAKHIRAE AGGKRKKSAH QKPLPQPVFW PLLKAVTHKH ENSTTRP00000013863/1-1055 CSALEAVFIH GLHTKHIRAE AGGKRKKSAH QKPLPQPVFW PLLKAVTHKH bmy_11360T0/1-603 ---------- ---------- ---------- ---------- ---------- BACU008399/1-1062 CSALEAVFIH GLHTKHIRAE AGGKRKKSAH QKPLPQPVFW PLLKAVTHKH 101 150 ENSBTAP00000027135/1-1066 IISELEHLIF VSTDVGRCRA WLRLALNDGL MECYLKLLLQ EKARLCEYYQ ENSP00000389913/1-1056 IISELEHLTF VNTDVGRCRA WLRLALNDGL MECYLKLLLQ EQARLHEYYQ ENSTTRP00000013863/1-1055 IISELEHLIF VSTDVGRCRA WLRLALNDGL MECYLKLLLQ EQARLCEYYQ bmy_11360T0/1-603 ---------- ---------- ---------- ---------- ---------- BACU008399/1-1062 IISELEHLIF VSTDVGRCRA WLRLALNDGL MECYLKLLLQ EQARLCEYYQ 151 200 ENSBTAP00000027135/1-1066 PTALLRDAEE GEFLLSFLQG LTSLSFELSY KSAILNEWTL TPLALSGLCP ENSP00000389913/1-1056 PTALLRDAEE GEFLLSFLQG LTSLSFELSY KSAILNEWTL TPLALSGLCP ENSTTRP00000013863/1-1055 PTALLRDAEE GEFLLSFLQG LTSLSFELSY KSAILNEWTL TPLALSGLCP bmy_11360T0/1-603 ---------- ---------- ---------- ---------- ---------- BACU008399/1-1062 PTALLRDAEE GEFLLSFLQG LTSLSFELSY KSAILNEWTL TPLALSGLCP 201 250 ENSBTAP00000027135/1-1066 LSELDPLTIP GAQLQRKESL DSISHSSGSE DIEVQHSGHK IRRNRQLTAS ENSP00000389913/1-1056 LSELDPLSTS GAELQRKESL DSISHSSGSE DIEVHHSGHK IRRNQKLTAS ENSTTRP00000013863/1-1055 LSELDPLTTS GAELQRKESL DSISHSSGSE DIEVQHSGHK IRRNRGLTAS bmy_11360T0/1-603 ---------- ---------- ---------- ---------- ---------- BACU008399/1-1062 LSELDPLTTS GAELQRKESL DSISHSSGSE DIEVQHSGHK IRRNRGLTAS 251 300 ENSBTAP00000027135/1-1066 SLSLDTASSS QLSCSLNSDS CLLQENGSKS PDRSEEPMSY DSDLGMANAD ENSP00000389913/1-1056 SLSLDTASSS QLSCSLNSDS CLLQENGSKS PDHCEEPMSC DSDLGTANAE ENSTTRP00000013863/1-1055 SLSLDTASSS QLSCSLNSDS CLLQENGSKS PDRSEEPMSC DSDLGMANAD bmy_11360T0/1-603 ---------- ---------- ---------- ---------- ---------- BACU008399/1-1062 SLSLDTASSS QLSCSLNSDS CLLQENGSKS PDHSEEPMSC DSDLGTANAD 301 350 ENSBTAP00000027135/1-1066 DSDMSLQEVL SEFSKAQVNS VPANGPIRET EVPTLQAPLP FPGLNTSTSL ENSP00000389913/1-1056 DSDRSLQEVL LEFSKAQVNS VPTNGLSQET EIPTPQASLS LHGLNTSTYL ENSTTRP00000013863/1-1055 DSDLSLQXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_11360T0/1-603 ---------- ---------- ---------- ---------- ---------- BACU008399/1-1062 DSDLSLQEVL SEFSKAQVNS VPTNRLSQET EVPPLQALLA LRGLDTSTPL 351 400 ENSBTAP00000027135/1-1066 HSEETAEPRH AQASPGTGDG DHKREPLAQA PSPLGWPQPG PAQAVLSGSA ENSP00000389913/1-1056 HCEAPAEPLP AQAASGTQDG VHVQEPRPQA PSPLDLQQPV E-------ST ENSTTRP00000013863/1-1055 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX X-------XX bmy_11360T0/1-603 ---------- ---------- ---------- ---------- ---------- BACU008399/1-1062 HFEVPAEPHP AQASPGTRDG DHKQEPLSQA PGPLGWPQPA SAQAVPSGST 401 450 ENSBTAP00000027135/1-1066 SGQQPPCPVR DATRAASQES GQQKPPEDSG PRLSLAVPSP TSPKSKSWIS ENSP00000389913/1-1056 SGQQPSSTVS ETAREVGQGN GLQKAQAHDG AGLKLVVSSP TSPKNKSWIS ENSTTRP00000013863/1-1055 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXKSTSWIS bmy_11360T0/1-603 ---------- ---------- ---------- ---------- ---------- BACU008399/1-1062 SGQQPPSPVR EATRAVGQGS GQKKPPEEDG PWLSLVVPSP TSPKSTSWIS 451 500 ENSBTAP00000027135/1-1066 EDDFYRPPRE QPRQSPSDAA TASPREIPES RPGL---LVQ EPRRSCSMEA ENSP00000389913/1-1056 EDDFYRPSRE QPLESASDHP IASYRGTPGS RPGLHRHFSQ EPRKNCSLGA ENSTTRP00000013863/1-1055 EDDFYRPPRE QPAESPSHAS VASPRGTPEP RPGL---LTQ GPRRSCSMET bmy_11360T0/1-603 ---------E QPAESPSHAS VASPRGTPEP RPGL---LSQ GPRRSCSMEA BACU008399/1-1062 EDDFYRPPQE QPTESRSPAS VASPRGTPEP RPGL---LSQ GPRRSCSMEA 501 550 ENSBTAP00000027135/1-1066 LDKACAPSPG SGRNTAALPP PEHRNFRVVH RRQMGLSNPF RGLLKLGTVE ENSP00000389913/1-1056 LDQACVPSPG RRQAQAA-PS QGHKSFRVVH RRQMGLSNPF RGLMKLGTVE ENSTTRP00000013863/1-1055 LDKACVPSLG SRRSKAA-PM PEHKNFRVVH RRQMGLSNPF RGLLKLGTVE bmy_11360T0/1-603 LDKACVPSPG SRRSKAT-PT LEHKNFRVVH RRQMGLSNPF RGLLKLGTVE BACU008399/1-1062 LDKACVPSPG SKRSKAT-PT LEHKNFRVVH RRQMGLSNPF RGLLKLGTVE 551 600 ENSBTAP00000027135/1-1066 RRGAMGIWKE FFCELSPLEL RLFLSGKERT CVETCSLLRC ESVGPAHSDG ENSP00000389913/1-1056 RRGAMGIWKE LFCELSPLEF RLYLSNEEHT CVENCSLLRC ESVGPAHSDG ENSTTRP00000013863/1-1055 RRGAMGIWKE LFCELSPLEL RLYLSGEERT CVENCSLLRC ESVGPAHSDG bmy_11360T0/1-603 RRGAMGIWKE LFCELSPLEL RLYLSGEERT CVENCSLLRC ESVGPAHSDG BACU008399/1-1062 RRGAMGIWKE LFCELSPLEL RLYLSGEERT CVENCSLLRC ESVGPAHSDG 601 650 ENSBTAP00000027135/1-1066 RFELLFSGKK LTLRTSSRDE AEDWLDRVRE VLQKCR-PLQ EDDWVTIQYP ENSP00000389913/1-1056 RFELVFSGKK LALRASSQDE AEDWLDRVRE ALQKVR-PQQ EDEWVNVQYP ENSTTRP00000013863/1-1055 RFELVFSGKK LTLRSSCRDE AEDWLDRVRE ALQKCRRPQQ EEEWVTIQYP bmy_11360T0/1-603 RFELVFSGKK LTLRSSSRDE AEDWLDRVRE ALQKCRRPQQ EEEWVTIQYP BACU008399/1-1062 RFDLVFSGKK LTLRSSSRDE AEDWLDRVRE ALQKCRRPQQ EEEWVTIQYP 651 700 ENSBTAP00000027135/1-1066 EEPEDPPEVP QGGHPAPSDL HIEAETPQGP QFNWSFSQVP EPDAIKESLL ENSP00000389913/1-1056 DQPEEPPEAP QGCL-SPSDL LSEPAALQGT QFDWSSAQVP EPDAIKESLL ENSTTRP00000013863/1-1055 DQPEDPPEAP QGGRPSHSDL LSEAETPQGP QFDWSSSQVP EPDAIKESLL bmy_11360T0/1-603 DQPEDPPEAP QGGRPSHSDL LSEPETPQGL QFDWSSSQVP EPDAIKESLL BACU008399/1-1062 DQPEDPPEAP QGGRPSHSDL LSEPETPQGP QFDWSSSQVP EPDAIKESLL 701 750 ENSBTAP00000027135/1-1066 YLYTDRTWTP YIFSLSLESL KCFRVRNNEK MLSDSHGVET IRDILPDTSL ENSP00000389913/1-1056 YLYMDRTWMP YIFSLSLEAL KCFRIRNNEK MLSDSHGVET IRDILPDTSL ENSTTRP00000013863/1-1055 YLYTDRTWMP CIFSLSLESL KCFRVRNNEK MLSDSHGVET IRDILPDTSL bmy_11360T0/1-603 YLYTDRTWMP YIFSLSLESL KCFRLRNNEK MLSDSHGVET IRDILPDTSL BACU008399/1-1062 YLYTDRTWMP YIFSLSLESL KCFRVRNNEK MLSDSHGVET IRDILPDTSL 751 800 ENSBTAP00000027135/1-1066 GGPAFFKIIT AKAILKLQAG NAEEAALWRD MLRKVLASYL ETAEEAVTLG ENSP00000389913/1-1056 GGPSFFKIIT AKAVLKLQAG NAEEAALWRD LVRKVLASYL ETAEEAVTLG ENSTTRP00000013863/1-1055 GGPSFFKIIT AKAVLKLQAG NAEEAALWRD LVRKVLASYL ETAEEAVTLG bmy_11360T0/1-603 GGPSFFKIIT AKAVLKLQAG NAEEAALWRD LVRKVLASYL ETAEEAVTLG BACU008399/1-1062 GGPSFFKIIT AKAVLKLQAG NAEEAALWRD LVRKVLASYL ETAEEAVTLG 801 850 ENSBTAP00000027135/1-1066 GSLDESCQEV LKFATRENGF LLQYLVAIPT EKGLDSQGCF CAGCSRQIGF ENSP00000389913/1-1056 GSLDENCQEV LKFATRENGF LLQYLVAIPM EKGLDSQGCF CAGCSRQIGF ENSTTRP00000013863/1-1055 GSLDENCQEV LKFATRENGF LLQYLVAIPT EKGLDSQGCF CAGCSRQIGF bmy_11360T0/1-603 GSLDENCQEV LKFATRENGF LLQYLVAIPT EKGLDSQGCF CAGCSRQIGF BACU008399/1-1062 GSLDENCQEV LKFATRENGF LLQYLVAIPT EKGLDSQGCF CAGCSRQIGF 851 900 ENSBTAP00000027135/1-1066 SFVRPKLCAF SGLYYCDICH QDDVSVIPAR IIHNWDLTKR LVCSIFLFFR ENSP00000389913/1-1056 SFVRPKLCAF SGLYYCDICH QDDASVIPAR IIHNWDLTKR PICRQALKFL ENSTTRP00000013863/1-1055 SFVRPKLCAF SGLYYCDICH QDDASVIPAR IIHNWDLTKR PVCRQALKFL bmy_11360T0/1-603 SFVRPKLCAF SGLYYCDICH QDDASVIPAR IIHNWDLTKR PVCRQALKFL BACU008399/1-1062 SFVRPKLCAF SGLYYCDICH QDDASVIPAR IIHNWDLTKR PVCRQALKFL 901 950 ENSBTAP00000027135/1-1066 SGLRVEPSTS IKHTGTQRHR HIHTSQCLGR DRDRRWHQLK PLGIHLGICI ENSP00000389913/1-1056 TQIRAQPLIN LQMVNASLYE HVERMHLIGR RRE----QLK LLGDYLGLCR ENSTTRP00000013863/1-1055 TRIRAQPLIN LQLVNASLYE HVERMHLIGR SRE----QLK LLGDYLGLCR bmy_11360T0/1-603 TQIQAQPLIN LQLVNASLYE HGERMHLIGR SRE----QLK LLGDYLGLCR BACU008399/1-1062 TQIRAQPLIN LQLVNASLYE HVERMHLIGR SRE----QLK LLGDYLGLCR 951 1000 ENSBTAP00000027135/1-1066 IYIYVYMNRR LNHRNYLLES PHKYSVADLQ QIADGVYEGF LKALIEFASQ ENSP00000389913/1-1056 SGALKELSKR LNHRNYLLES PHRFSVADLQ QIADGVYEGF LKALIEFASQ ENSTTRP00000013863/1-1055 SGALKELSKR LNHRNYLLES PHKYSVADLQ QIADGLYEGF LKSLIEFASQ bmy_11360T0/1-603 SGALKELSKR LNHRNYLLES PHKYSVADLQ QIADGVYEGF LKSLIEFASQ BACU008399/1-1062 SGALKELSKR LNHRNYLLES PHKYSVADLQ QIADGVYEGF LKSLIEFASQ 1001 1050 ENSBTAP00000027135/1-1066 HVYHCDLCTQ RGFICQICHH HDIIFPFEFD TTVRCSECKT VFHQTCQAVV ENSP00000389913/1-1056 HVYHCDLCTQ RGFICQICQH HDIIFPFEFD TTVRCAECKT VFHQSCQAVV ENSTTRP00000013863/1-1055 HVYHCDLCTQ RGFICQICHH HDIIFPFEFD TTVRCGECKT VFHQSCQAVM bmy_11360T0/1-603 HVYHCDLCTQ RGFICQICHH HDIIFPFEFD TTVRCGECKT VFHQSCQAVM BACU008399/1-1062 HVYHCDLCTQ RGFICQICHH HDIIFPFEFD TTVRCGECKT VFHQSCQAVM 1051 1100 ENSBTAP00000027135/1-1066 QKGCPRCARR RKYQEQNSLT ENSP00000389913/1-1056 KKGCPRCARR RKYQEQNIFA ENSTTRP00000013863/1-1055 KKGCPRCARR LKYQQQSTLA bmy_11360T0/1-603 KKGCPRCARR RKYQEQSTLA BACU008399/1-1062 KKGCPRCARR RKYQEQSTLA