KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:31:29 2014 Check: 00 .. Name: ENSP00000258613/1-852 Len: 863 Check: 2287 Weight: 1.00 Name: ENSBTAP00000027155/1-849 Len: 863 Check: 4541 Weight: 1.00 Name: ENSTTRP00000009206/1-839 Len: 863 Check: 3968 Weight: 1.00 Name: BACU015778/1-791 Len: 863 Check: 8491 Weight: 1.00 Name: bmy_09789T0/1-547 Len: 863 Check: 7930 Weight: 1.00 // 1 50 ENSP00000258613/1-852 MKPMLKDFSN LLLVVLCDYV LGEAEYLLLR EPGHVALSND TVYVDFQYFD ENSBTAP00000027155/1-849 MKQTLKDFSN LLLVVLCDYV LGEAEHLVLG EPGHVALSNS TVTVDFH--- ENSTTRP00000009206/1-839 MKQMLKDFSN LLLVVLCDYV LGEAEYLLLG EPGHVALSNR TVSVDFQYLD BACU015778/1-791 MKQMLKDFSN LLLVVLCDYV LGEAEYLLLG EPGHVALSNR TVSVDFQYLD bmy_09789T0/1-547 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000258613/1-852 GANGTLRNVS VLLLEANTNQ TVTTKYLLTN QSQGTLKFEC FYFKEAGDYW ENSBTAP00000027155/1-849 GANGTLRNVS VLLVEASSNQ TLTTKYLLTN QSQGTLEFEC FYFKEAGDYW ENSTTRP00000009206/1-839 GANGTLRNVS VLLLEANTNQ TVTTKYLLTN QSQGTLEFEC FYFKEAGDYR BACU015778/1-791 GANGTLRNVS VLLLEANTNQ TVTTKYLLTN QSQGTLEFEC FYFKEAGDYW bmy_09789T0/1-547 ---------- ---------- ---------- ---------- -----TWGLW 101 150 ENSP00000258613/1-852 FTMTPEATDN STPFPWWEKS AFLKVEWPVF HVDLNRSAKA AEGTFQVGLF ENSBTAP00000027155/1-849 FVMTREATNS SLPVPPRERS AFLKVEWPVF HVDLSRTSMA AEGTFQVGLF ENSTTRP00000009206/1-839 FTMTPEATDS SPPVPWWERS AFLKVEWPVF HVDLNRTSKA AEGTFQVGLF BACU015778/1-791 FTMTPEATDS SPPVPWWERS AFLKVEWPVF HVDLNRTSKA AEGTFQVGLF bmy_09789T0/1-547 Q--------- ----PWSQCS A--------- ---------- ---TCGDGVR 151 200 ENSP00000258613/1-852 TSQPLCPFPV DKPNIVVDVI FTNSLPEARR NSRQPLEIRT SKRTELAQGQ ENSBTAP00000027155/1-849 TSQPLCPFPG DKPDILLEVT FTNSLPEARA GQALPLEIRA SKRVELAQGQ ENSTTRP00000009206/1-839 TSQPLCLFPV DKPGILVDVT FTNSLPEARM SQGQPLEIRP SKRADLAQGQ BACU015778/1-791 TSQPLCLFPV DKPDILVDVI FTNSLPEARL SQGQPLEIRA SKRAELAQGQ bmy_09789T0/1-547 ERRRLCL--- ---------- --------TS SPSRP----- ---------- 201 250 ENSP00000258613/1-852 WVEFGCAPLG PEAY--VTVV LKLLGRDSVI TSTGPIDLAQ KFGYKLVMVP ENSBTAP00000027155/1-849 WVEFDCPPVG PEAYVTVTVV LKLLGRDSVI MSTGPIDLAQ KFGYKLVMEP ENSTTRP00000009206/1-839 WVEFGCAPVG G-AY--VTVM L-LLGGDSVI TST-PIXXXX XXXYALVMKP BACU015778/1-791 WVEFGCAPVG PEAY--VTVV LKLLGRDSVI TSTGPIDLAQ KFGYALVMAP bmy_09789T0/1-547 ----GCPGMS SESS------ ---------- ----PCSLED CAG------- 251 300 ENSP00000258613/1-852 ELTCESGVEV TVLPPPCTFV QGVVTVFKEA PRYPGKRTIH LAENSLPLGE ENSBTAP00000027155/1-849 ELTCEAGVEV TVLPPPCIFV QGVIAVFKEA PRLPGERTNR LAENSLALGE ENSTTRP00000009206/1-839 EL-CESGVEV RVLPPPCIFV QGVIAVFREA PRRPGERTIR LAENSL-VGE BACU015778/1-791 ELTCESGVEV KVLPPPCVFV QGVIAVFKEA PRRPGERTVR LAEHSLTLGE bmy_09789T0/1-547 ---------- -------RYP SSFASLFPEG LSNP------ ---------- 301 350 ENSP00000258613/1-852 RRTIFNCTLF DMGKNKYCFD FGISSRSHFS AKE-ECMLIQ RNTETWGLWQ ENSBTAP00000027155/1-849 RRTVFNCTLF DMGRNKYCFD FGVSSQSQFS AKEKECMLIR RSIETWGLWQ ENSTTRP00000009206/1-839 RRTVFNCTLF DVGRHKYCFD FGVSSRSQFS AKEKECMLIQ RNIETWGLWQ BACU015778/1-791 RRTVFNCTLF DMGRNKYCFD FGVSSRSQFS AKEKECMLIQ RNI------- bmy_09789T0/1-547 ---------- ---------D LPDSRQPEFR SGLDALLLLF LAVQT----- 351 400 ENSP00000258613/1-852 PWSQCSATCG DGVRERRRVC LTSFPSSPVC PGMSLEASLC SLEECAAFQP ENSBTAP00000027155/1-849 PWSQCSASCG DGVRERRRVC LTSSPSRPGC PGMSSETSPC SLEDCAAFQP ENSTTRP00000009206/1-839 PWSQCSATCG DGVRERRRLC LPSSPSRPGC PGMSSESSPC SLEDCTAFQP BACU015778/1-791 ---------- ---------- ---------- ---------- ------AFQP bmy_09789T0/1-547 ---------- ---------- --------LC P--------- --------SP 401 450 ENSP00000258613/1-852 SSPSPLQPQG PVKSNNIVTV TGISLCLFII IATVLITLWR RFGRPAKCST ENSBTAP00000027155/1-849 SSPSPLQPQA PVKSNNVVTV TGISLCLFII VATVLITLWR KLGRAPKCST ENSTTRP00000009206/1-839 SSPSPFQPQT PVKSNNIVTV TGISLCLFII VATVLITLWR KLGRAPKCST BACU015778/1-791 STPSPFQPQA PVKSNNIVTV TGISLCLFII VATVLITLWR KLGRAPKCST bmy_09789T0/1-547 STPSPFQPQA PMKSNNIVTV TGISLCLFII VATVLITLWR KLGRAPKCSA 451 500 ENSP00000258613/1-852 PARHNSIHSP SFRKNSDEEN ICELSEQRGS FSDGGDGPTG SPGDTGIPLT ENSBTAP00000027155/1-849 PARHNSLHGP GCRKNSDEEN ICELSEPRGS FSDAGDGPAG SPGDPGIPLT ENSTTRP00000009206/1-839 PVHHNSLHAP GCRKNSDEEN ICELSEPRGS FSDAGDGPAG SPAGQGIPLT BACU015778/1-791 PVRHNSLHAP GCRKNSDEEN ICELSEPRGS FSDAGDGPAG SPGDQGIPLT bmy_09789T0/1-547 PVRHNSLHAP GCRKNSDEEN ICELSEPRGS FSDAGDGPAG SPGDQGIPLT 501 550 ENSP00000258613/1-852 YRRSGPVPPE DDASGSESFQ SNAQKIIPPL FSYRLAQQQL KEMKKKGLTE ENSBTAP00000027155/1-849 YRRSVPAPPD DEASGSESFQ ANAQKIIPPL FSYRLAQQQL KEMKKKGLTE ENSTTRP00000009206/1-839 YRRSVPAPPD DETSGSESFQ SNAQKIIPPL FSYRLAQQQL KEMKKKGVTE BACU015778/1-791 YRRSVPAPPD DETSGSESFQ SNAQKIIPPL FSYRLAQQQL KEMKKKGLTE bmy_09789T0/1-547 YRRSVPAPPD DETSGSESFQ SNAQKIIPPL FSYRLAQQQL KEMKKKGLTE 551 600 ENSP00000258613/1-852 TTKVYHVSQS PLTDTAID-- -----AAPSA PLDLESPEEA AANKFRIKSP ENSBTAP00000027155/1-849 TTKVYHVSQS PLTDTAIDAA ATAAAAAAAS PGGSESPEEA AAGKFRIKSP ENSTTRP00000009206/1-839 TTKVYHVSQS PLTDTAID-- ----AAVTAP PGGSESPEEA AAGKFRLKSP BACU015778/1-791 TTKVYHVSQS PLTDTVID-- ----AAVAAP PGGSESPEEA AAGKFRLKSP bmy_09789T0/1-547 TTKVYHVSQS PLTDTAID-- ----AAVAAP PGGSESPEEA AAGKFRLKSP 601 650 ENSP00000258613/1-852 FPEQ-PAVSA GERPPSRLDL NVTQASCAIS PSQTLIRKSQ ARHVGSRGGP ENSBTAP00000027155/1-849 FLEHPPTVGA GDRPPSRLDH PFSAASCAVS PSQTLLRKSQ V--------- ENSTTRP00000009206/1-839 FLEQPPAVGA GDRPPSRLDH PLSPASCAVS PSQSLLRKSQ M--------- BACU015778/1-791 FLEQPPAVGA GDRPPSRLDH ALSPASCAVS PSQSLLRKSQ M--------- bmy_09789T0/1-547 FLEQPPAVGA GDRPPSRPDH PLSPASCAVS PSQSLLRKSQ M--------- 651 700 ENSP00000258613/1-852 SERSHARNAH FRRTASFHEA RQARPFRERS MSTLTPRQAP AYSSRTRTCE ENSBTAP00000027155/1-849 --RSHSRGSH FRRTASFHEA RQARPFRERS LSTLTPRPTP AHGPRARTWD ENSTTRP00000009206/1-839 --RSHPRGSH FRRTASFHEA RQARPFRERS LSTLTPRQAP AYSSRSRTWD BACU015778/1-791 --RSHPRGSH FRRTASFHEA RQARPFRERS LSTLTPRQAP AYSCRSRTWD bmy_09789T0/1-547 --RSHPRGSH FRRTASFHEA RQARPFRERS LSTLTPRQAP AYSCRSRTWD 701 750 ENSP00000258613/1-852 QAEDRFRPQS RGAHLFPEKL EHFQEASGTR GPLNPLPKSY TLGQPLRKPD ENSBTAP00000027155/1-849 QAGERGRPPS RGTALFPEKR DHGPGAAGAS GPLSPLPKPH SLGPPPRKPD ENSTTRP00000009206/1-839 QAGERVRPPS RGTALFPEKR DHCPGAGGSS GPLSPFPKPH TLGQPTRKPD BACU015778/1-791 QAGERVRPPS RGAALLPEKR DNCPGAGGTS GPLSPFPKPH TLGQPTRKPD bmy_09789T0/1-547 QAGERVRPPS RGAALLPEKR DHCPGAGGSS GPLSPFPKPH TLGQPTRKPD 751 800 ENSP00000258613/1-852 LGDHQAGLVA GIERTEPHRA RRGPSPSHKS VSRKQSSPIS PKDNYQRVSS ENSBTAP00000027155/1-849 LGDRQAGFVG AGERPEPPRA RRGPSPSHRS VSRKQPSPPA PKDGYQRVSP ENSTTRP00000009206/1-839 LGDRQAGFVA GGERTEPHRA RRGPSPSHRN VSRKRPSSPA PRDSYQRVSP BACU015778/1-791 LGERQAGFAA GGERTEPHRA RRGPSPSHRN VSRKRPSSPA PRDSYQRVSP bmy_09789T0/1-547 LGDRQAGFVA GGERTEPHRA RRGPSPSHRN VSRKRPSSPA PRDSYQRVSP 801 850 ENSP00000258613/1-852 LSPSQCRKDK CQSFPTHPEF AFYDNTSFGL TEAEQRMLDL PGYFGSNEED ENSBTAP00000027155/1-849 LSPSQGRKDK CQSFPAHPEF AFYDNTSFGL TEAEQRMLDL PGYFGSNEED ENSTTRP00000009206/1-839 LSPSQCRKDK CQSFPAHPEF AYYDNTSFGL TEAEQGMLDL PGYFGSNEED BACU015778/1-791 LSPSQGRKDK CQSFPAHPEF AYYDNTSFGL TEAEQGMLDL PGYFGSNEED bmy_09789T0/1-547 LSPSQCRKDK CQSFPAHPEF AYYDNTSFGL TEAEQGMLDL PGYFGSNEED 851 900 ENSP00000258613/1-852 ETTSTLSVEK LVI ENSBTAP00000027155/1-849 ETTSTLSVEK LVI ENSTTRP00000009206/1-839 ETTSTLSVEK LVI BACU015778/1-791 ETTSTLSVEK LVI bmy_09789T0/1-547 ETTSTLSVEK LVI