KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:31:29 2014 Check: 00 .. Name: ENSBTAP00000027161/1-800 Len: 928 Check: 1236 Weight: 1.00 Name: bmy_02298T0/1-512 Len: 928 Check: 9860 Weight: 1.00 Name: ENSP00000345731/1-926 Len: 928 Check: 1520 Weight: 1.00 Name: BACU003799/1-927 Len: 928 Check: 2146 Weight: 1.00 Name: ENSTTRP00000011781/1-920 Len: 928 Check: 7789 Weight: 1.00 // 1 50 ENSBTAP00000027161/1-800 ---------- ---------- ---------- ---------- ---------- bmy_02298T0/1-512 ---------- ---------- ---------- ---------- ---------- ENSP00000345731/1-926 MPVRKQDTQR ALHLLEEYRS KLSQTEDRQL RSSIERVINI FQSNLFQALI BACU003799/1-927 MPVRKQDTQR ALHLLEGYRS KLSQTEDRQL RSSIERVINI FQSNLFQALI ENSTTRP00000011781/1-920 MPVRKQ---- ---LLEGYRS KLSQTEDRQL RSSIERVINI FQSNLFQALI 51 100 ENSBTAP00000027161/1-800 ---------- ---------- ---------- ---------- ---------- bmy_02298T0/1-512 ---------- ---------- ---------- ---------- ---------- ENSP00000345731/1-926 DIQEFYEVTL LDNPKCIDRS KPSEPIQPVN TWEISSLPSS TVTSETLPSS BACU003799/1-927 DIQEFYEVTL LDNPKCIDRS KQSEPIQPVN TWEISSLPST TVTSETLPSS ENSTTRP00000011781/1-920 DIQEFYEVTL LDNPKCIDRS KQSEPIQPVN TWEISSLPST TVTSETLPSS 101 150 ENSBTAP00000027161/1-800 ----LQKYRY QDEDTPPQEH ISPQITNEVI GPELVHVSEK NLSEIENVHG bmy_02298T0/1-512 ---------- ---------- ---------- ---------- ---------- ENSP00000345731/1-926 LSPSVEKYRY QDEDTPPQEH ISPQITNEVI GPELVHVSEK NLSEIENVHG BACU003799/1-927 LSPSVEKYRY QDEDTAPQEH ISPQITNEVI GPELVHVSEK NLSEIENVHG ENSTTRP00000011781/1-920 LSPSVEKYRY QDEDTPPQEH ISPQITNEVI GPELVHVSEK NLSEIENVHG 151 200 ENSBTAP00000027161/1-800 FVSHSHISPV KPTEAVSPSS PTVPVIPVLP VPAENTVILP IIPQANPPPV bmy_02298T0/1-512 ---------- ---------- ---------- ---------- ---------- ENSP00000345731/1-926 FVSHSHISPI KPTEAVLPSP PTVPVIPVLP VPAENTVILP TIPQANPPPV BACU003799/1-927 FVSHSHISPI KPTEAVPPSP PTVPVIPVLP VPAESTVILP TIPQANPPPV ENSTTRP00000011781/1-920 FVSHSHISPI KPTEAVPPSS PTVPVIPVLP VPAENTVILP TIPQANPPPV 201 250 ENSBTAP00000027161/1-800 LVNTDSLETS TYVNGTDADY EYEEITLERG NSGLGFSIAG GTDNPHIGDD bmy_02298T0/1-512 ---------- --VNGTDADY EYEEITLERG NSGLGFSIAG GTDNPHIGDD ENSP00000345731/1-926 LVNTDSLETP TYVNGTDADY EYEEITLERG NSGLGFSIAG GTDNPHIGDD BACU003799/1-927 LINTDSLETS TYVNGTDADY EYEEITLERG NSGLGFSIAG GTDNPHIGDD ENSTTRP00000011781/1-920 LVNTDSLETS TYVNGTDADY EYEEITLERG NSGLGFSIAG GTDNPHIGDD 251 300 ENSBTAP00000027161/1-800 SSIFITKIIA GGAAAQDGRL RVNDCILRVN EIDVRDVTHS KAVEALKEAG bmy_02298T0/1-512 SSIFITKIIA GGAAAQDGRL RVNDCILRVN EVDVRDVTHS KAVEALKEAG ENSP00000345731/1-926 SSIFITKIIT GGAAAQDGRL RVNDCILRVN EVDVRDVTHS KAVEALKEAG BACU003799/1-927 SSIFITKIIA GGAAAQDGRL RVNDCILRVN EVDVRDVTHS KAVEALKEAG ENSTTRP00000011781/1-920 SSIFITKIIA GGAAAQDGRL RVNDCILRVN EVDVRDVTHS KAVEALKEAG 301 350 ENSBTAP00000027161/1-800 SIVRLYVKRR KPVSEKIMEI KLIKGPKGMN FTLKGLVCNK NIAGFLLMYI bmy_02298T0/1-512 SIVRLYVKRR KPVSEKIMEI KLIKGPKGLG FSIAGGVGNQ HIPGDNSIYV ENSP00000345731/1-926 SIVRLYVKRR KPVSEKIMEI KLIKGPKGLG FSIAGGVGNQ HIPGDNSIYV BACU003799/1-927 SIVRLYVKRR KPVSEKIMEI KLIKGPKGLG FSIAGGVGNQ HIPGDNSIYV ENSTTRP00000011781/1-920 SIVRLYVKRR KPVSEKIMEI KLIKGPKGLG FSIAGGVGNQ HIPGDNSIYV 351 400 ENSBTAP00000027161/1-800 SRVISNIFSY LQRQIYTPKK VFTVNSVCLE EVTHEEAVTA LKNTSDFVYL bmy_02298T0/1-512 TKIIEGGAAH KDGKLQIGDK LLA------- ---------- ---------- ENSP00000345731/1-926 TKIIEGGAAH KDGKLQIGDK LLAVNNVCLE EVTHEEAVTA LKNTSDFVYL BACU003799/1-927 TKIIEGGAAH KDGNLQIGDK LLAVNSVCLE EVTHEEAVTA LKNTSDFVFL ENSTTRP00000011781/1-920 TKIIEGGAAH KDGKLQIGDK LLAVNTVCLE EVTHEEAVTA LKNTSDFVFL 401 450 ENSBTAP00000027161/1-800 KVAKPTSMYM NDGYAPPDIT NSSSQPIDNH VSPPSYLVQT PASPARYSPV bmy_02298T0/1-512 ---------- ---------- ---------- ---------- ---------- ENSP00000345731/1-926 KVAKPTSMYM NDGYAPPDIT NSSSQPVDNH VSPSSFLGQT PASPARYSPV BACU003799/1-927 KVAKPTSMYM NDGYAPPDIT NSSSQPVDNH VSTSSYLGQT PASPARYSPV ENSTTRP00000011781/1-920 KVAKPTSMYM NDGYAPPDIT NSSSQPVDNH VSTSSYLGQT PASPARYSPV 451 500 ENSBTAP00000027161/1-800 SKAVLGDDEI TREPRKVVLH RGSTGLGFNI VGGEDGEGIF ISFILAGGPA bmy_02298T0/1-512 ---------- ---------- ---------- ---------- ---------- ENSP00000345731/1-926 SKAVLGDDEI TREPRKVVLH RGSTGLGFNI VGGEDGEGIF ISFILAGGPA BACU003799/1-927 SKAVLGDDEI TREPRKVVLH RGSTGLGFNI VGGEDGEGIF ISFILAGGPA ENSTTRP00000011781/1-920 SKAVLGDDEI TREPRKVVLH RGSTGLGFNI VGGEDGEGIF ISFILAGGPA 501 550 ENSBTAP00000027161/1-800 DLSGELRKGD RIISVNSVDL RTASHEQAAA ALKNAGQAVT IVAQYRPEEY bmy_02298T0/1-512 ---------- ----VNSVDL RTASHEQAAA ALKNAGQAVT IVAQYRPEEY ENSP00000345731/1-926 DLSGELRKGD RIISVNSVDL RAASHEQAAA ALKNAGQAVT IVAQYRPEEY BACU003799/1-927 DLSGELRKGD RIISVNSVDL RTASHEQAAA ALKNAGQAVT IVAQYRPEEY ENSTTRP00000011781/1-920 DLSGELRKGD RIISVNSVDL RTASHEQAAA ALKNAGQAVT IVAQYRPEEY 551 600 ENSBTAP00000027161/1-800 SRFEAKIHDL REQMMNSSIS SGSGSLRTSQ KRSLYVRALF DYDKTKDSGL bmy_02298T0/1-512 SRFEAKIHDL REQMMNSSIS SGSGSLRTSQ KRSLYVRALF DYDKTKDSGL ENSP00000345731/1-926 SRFEAKIHDL REQMMNSSIS SGSGSLRTSQ KRSLYVRALF DYDKTKDSGL BACU003799/1-927 SRFEAKIHDL REQMMNSSIS SGSGSLRTSQ KRSLYVRALF DYDKTKDSGL ENSTTRP00000011781/1-920 SRFEAKIHDL REQMMNSSIS SGSGSLRTSQ KRSLYVRALF DYDKTKDSGL 601 650 ENSBTAP00000027161/1-800 PSQGLNFKFG DILYVINASD DEWWQARQVT PDGESDEVGV IPSKRRVSLK bmy_02298T0/1-512 PSQGLNFKFG DILHVINASD DEWWQARQVT PDGESDEVGV IPSKRRVEKK ENSP00000345731/1-926 PSQGLNFKFG DILHVINASD DEWWQARQVT PDGESDEVGV IPSKRRVEKK BACU003799/1-927 PSQGLNFKFG DILHVINASD DEWWQARQVT PDGESDEVGV IPSKRRVEKK ENSTTRP00000011781/1-920 PSQGLNFKFG DILHVINASD DEWWQARQVT PDGESDEVGV IPSKRRVEKK 651 700 ENSBTAP00000027161/1-800 KPKVIKEIYL DTSTN----- ---------- --------SQ IEIPDDMGSK bmy_02298T0/1-512 ERARLKTVKF NSKARGDKGQ SFNDKRKKNL FSRKFPFYKN KDQSEQETSD ENSP00000345731/1-926 ERARLKTVKF NSKTR-DKGQ SFNDKRKKNL FSRKFPFYKN KDQSEQETSD BACU003799/1-927 ERARLKTVKF NSKARGDKGQ SFNDKRKKNL FSRKFPFYKN KDQSEQETSD ENSTTRP00000011781/1-920 ERARLKTVKF NSKARGDKGQ SFNDKRKKNL FSRKFPFYKN KDQSEQETSD 701 750 ENSBTAP00000027161/1-800 GLKHVTSNAS DSESSYRGQE EYVLSYEPVN QQEVNYTRPV IILGPMKDRI bmy_02298T0/1-512 AD-------- ------RGQE EYVLSYEPVN QQE------- ---------- ENSP00000345731/1-926 ADQHVTSNAS DSESSYRGQE EYVLSYEPVN QQEVNYTRPV IILGPMKDRI BACU003799/1-927 ADQHVTSNAS DSESSYRGQE EYVLSYEPVN QQEVNYTRPV IILGPMKDRI ENSTTRP00000011781/1-920 ADQHVTSNAS DSESSYRGQE EYVLSYEPVN QQEVNYTRPV IILGPMKDRI 751 800 ENSBTAP00000027161/1-800 NDDLISEFPD KFGSCVPHTT RPKRDYEVDG RDYHFVTSRE QMEKDIQEHK bmy_02298T0/1-512 ---------- -------DTT RPKRDYEVDG RDYHFVTSRE QMEKDIQEHK ENSP00000345731/1-926 NDDLISEFPD KFGSCVPHTT RPKRDYEVDG RDYHFVTSRE QMEKDIQEHK BACU003799/1-927 NDDLISEFPD KFGSCVPHTT RPKRDYEVDG RDYHFVTSRE QMEKDIQEHK ENSTTRP00000011781/1-920 NDDLISEFPD KFGSCVPHTT RPKRDYEVDG RDYHFVTSRE QMEKDIQEHK 801 850 ENSBTAP00000027161/1-800 FIEAGQYNNH LYGTSVQSVR EVAEKGKHCI LDVSGNAIKR LQIAQLYPIS bmy_02298T0/1-512 FIEAGQYNNH LYGTSVQSVR EVAEK----- ---------- IHVAALITLS ENSP00000345731/1-926 FIEAGQYNNH LYGTSVQSVR EVAEKGKHCI LDVSGNAIKR LQIAQLYPIS BACU003799/1-927 FIEAGQYNNH LYGTSVQSVR EVAEKGKHCI LDVSGNAIKR LQIAQLYPIS ENSTTRP00000011781/1-920 FIEAGQYNNH LYGTSVQSVR EVAEKGKHCI LDVSGNAIKR LQIAQLYPIS 851 900 ENSBTAP00000027161/1-800 IFIKP-KSME NIMEMNKRLT EEQARKTFER AMKLEQEFTE HFTAIVQGDT bmy_02298T0/1-512 NVMNLFNYIF TFGEMNKRLT EEQARKTFER AMKLEQEFTE HFTAIIQGDT ENSP00000345731/1-926 IFIKP-KSME NIMEMNKRLT EEQARKTFER AMKLEQEFTE HFTAIVQGDT BACU003799/1-927 IFIKP-KSME NIMEMNKRLT EEQARKTFER AMKLEQEFTE HFTAIIQGDT ENSTTRP00000011781/1-920 IFIKP-KSME NIMEMNKRLT EEQARKTFER AMKLEQEFTE HFTAIIQGDT 901 950 ENSBTAP00000027161/1-800 LEDIYNQVKQ IIEEQSGPYI WVPAKEKL bmy_02298T0/1-512 LEDIYNQVKQ IIEEQSGPYI WVPAKEKL ENSP00000345731/1-926 LEDIYNQVKQ IIEEQSGSYI WVPAKEKL BACU003799/1-927 LEDIYNQVKQ IIEEQSGPYI WVPAKEKL ENSTTRP00000011781/1-920 LEDIYNQVKQ IIEEQSGPYI WVPAKEKL