KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:31:31 2014 Check: 00 .. Name: ENSP00000379654/1-1742 Len: 1762 Check: 9408 Weight: 1.00 Name: ENSBTAP00000027175/1-1742 Len: 1762 Check: 119 Weight: 1.00 Name: bmy_05431T0/1-1761 Len: 1762 Check: 3274 Weight: 1.00 Name: ENSTTRP00000009723/1-1742 Len: 1762 Check: 3825 Weight: 1.00 // 1 50 ENSP00000379654/1-1742 MMEGNGTENS CSRTRGWLQQ DNDAKPWLWK FSNCFSRPEQ TLPHSPQTKE ENSBTAP00000027175/1-1742 -MEGSGTENP CSTTVGWLQQ DNDAKPWLWR FSNCFSRPQQ TLPLSPQTKD bmy_05431T0/1-1761 MMEGNGTENS CSRTLGWLQQ DNDAKPWLWK FSNCFSRPEQ TLPLSPQTKD ENSTTRP00000009723/1-1742 MMEGNGTENS CSRTLGWLQQ DNDAKPWLWK FSNCFSRPEQ TLPLSPQTKD 51 100 ENSP00000379654/1-1742 YMENKKVAVE LKDVPSPLHA GSKLFPAVPL PDIRSLQQPK IQLSSVPKVS ENSBTAP00000027175/1-1742 YMENKKVAVE LKDVPSPLHA GSKLFPAVPL PDIHSLQQPK VQLSTVPKVS bmy_05431T0/1-1761 YMESKKVAVE LKDVPSPLHA GSKLFPAVPL PDIHSLQQPK IQLSAVPKVS ENSTTRP00000009723/1-1742 YMENKKVAVE LKDVPSPLHA GSKLFPAVPL PDIHSLQQPK IQLSTVPKVS 101 150 ENSP00000379654/1-1742 CCAHCPNEPS TSPMRF--GG GGGGSGGTSS LIHPGALLDS QSTRTITCQV ENSBTAP00000027175/1-1742 CCAHCTNDPS TSPVRF---- GGGSGGGAGS LVPPGALLDS QSTRTITCQV bmy_05431T0/1-1761 CCAHCPNDPS TSPMRFGGGG GGGGGGGTGS LIPPGALLDS QSTRTVTCQV ENSTTRP00000009723/1-1742 CCAHCPNDPS TSPMRF---- GGGGGGGTGS LIPPGALLDS QSTRTVTCQV 151 200 ENSP00000379654/1-1742 GSGFAFQSAS SLQNASARNN LAGIASDFPS MCLESNLSSC KHLPCCGKLH ENSBTAP00000027175/1-1742 GSGLAFQSAP PLQNASARNT LAGVASDFPS MCLESNLSSC KHLPCCGKLH bmy_05431T0/1-1761 GSGFAFQSAS SLQSASARNN LAGVASDFPS MCLESNLSPC KHLPCCGKLH ENSTTRP00000009723/1-1742 GSGFAFQSAS SLQSASARNS LASVASDFPS MCLESNLSPC KHLPCCGKLH 201 250 ENSP00000379654/1-1742 FQSCHGNVHK LHQFPSLQGC T-SAGYFPCS DFTSGAPGHL EEHISQSELT ENSBTAP00000027175/1-1742 FQSCRGNVHK LHQFPALQGC PSSAGYFPCS DFTSGAPGHV EEHVSQSELT bmy_05431T0/1-1761 FQSCHGNVHK LHQFPALQGC TSSAGYFPCT DFTSGAPGHL EEHISQSELT ENSTTRP00000009723/1-1742 FQSCHGNVHK LHQFPALQGC TSSAGYFPCS DFTSGAPGHL EEHISQSELT 251 300 ENSP00000379654/1-1742 PHLCTNSLHL NVVPPVCLKG SLYCEDCLNK PARNSIIDAA KVWPNIPPPN ENSBTAP00000027175/1-1742 PHLCTNSLHL NVVPPVCLKG SLYCEDCLSK PARNSIIDAA KVWPNIPPPN bmy_05431T0/1-1761 PHLCTNSLHL NVVPPVCLKG SLYCEDCLNK PARNSIIDAA KVWPNIPPPN ENSTTRP00000009723/1-1742 PHLCTNSLHL NVVPPVCLKG SLYCEDCLNK XXXXXXXXXX XXXXXXXXXX 301 350 ENSP00000379654/1-1742 TQPAPLAVPL CNGCGTKGTG KETTLLLATS LGKAASKFGS PEVAVAGQVL ENSBTAP00000027175/1-1742 TQTAPVTVPL CNGCGTKGMG KETTLLLATS LGKAASKFGS PEVALAGQML bmy_05431T0/1-1761 TQTAPVTIPL CNGCGTKGTG KETTLLLATS LGKAASKFGS PEVALAGQVL ENSTTRP00000009723/1-1742 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX LGKAASKFGS PEVALAGQVL 351 400 ENSP00000379654/1-1742 ENLPPIGVFW DIENCSVPSG RSATAVVQRI REKFFKGHRE AEFICVCDIS ENSBTAP00000027175/1-1742 ENLPPIGVFW DIENCSVPSG RSATAVVQRI REKFFKGHRE AEFICVCDIS bmy_05431T0/1-1761 ENLPPIGVFW DIENCSVPSG RSATAVVQRI REKFFKGHRE AEFICVCDIS ENSTTRP00000009723/1-1742 ENLPPIGVFW DIENCSVPSG RSATAVVQRI REKFFKGHRE AEFICVCDIS 401 450 ENSP00000379654/1-1742 KENKEVIQEL NNCQVTVAHI NATAKNAADD KLRQSLRRFA NTHTAPATVV ENSBTAP00000027175/1-1742 KENKEVIQEL NNCQVTVAHI NATAKNAADD KLRQSLRRFA NTHTAPATVV bmy_05431T0/1-1761 KENKEVIQEL NNCQVTVAHI NATAKNAADD KLRQSLRRFA NTHTAPATVV ENSTTRP00000009723/1-1742 KENKEVIQEL NNCQVTVAHI NATAKNAADD KLRQSLRRFA NTHTAPATVV 451 500 ENSP00000379654/1-1742 LVSTDVNFAL ELSDLRHRHG FHIILVHKNQ ASEALLHHAN ELIRFEEFIS ENSBTAP00000027175/1-1742 LVSTDVNFAL ELSDLRHRHG FHIILVHKNQ ASEALLHHAN ELIRFEEFIS bmy_05431T0/1-1761 LVSTDVNFAL ELSDLRHRHG FHIILVHKNQ ASEALLHHAN ELIRFEEFIS ENSTTRP00000009723/1-1742 LVSTDVNFAL ELSDLRHRHG FHIILVHKNQ ASEALLHHAN ELIRFEEFIS 501 550 ENSP00000379654/1-1742 DLPPRLPLKM PQCHTLLYVY NLPANKDGKS VSNRLRRLSD NCGGKVLSIT ENSBTAP00000027175/1-1742 DLPPRLPLKM P-CHTLLYVY NLPANKDGKS ISNRLRRLSD NCGGKVLNIT bmy_05431T0/1-1761 DLPPRLPVKM P-CHTLLYVY NLPANKDGKS ISNRLRRLSD NCGGKVLNIT ENSTTRP00000009723/1-1742 DLPPRLPVKM PQCQTLLYVY NLPANKDGKS ISNRLRRLSD NCGGKVLNIT 551 600 ENSP00000379654/1-1742 GCSAILRFIN QDSAERAQKR MENEDVFGNR IIVSFTPKNR ELCETKSSNA ENSBTAP00000027175/1-1742 GCSAILRFIN RDSAERALKR MENEDVFGNR IVVSFTPKSS ELCETKSSNA bmy_05431T0/1-1761 GCSAILRFIN RDSAERALKR MENEDVFGNR IIVSFTPKSG ELCETKSSNA ENSTTRP00000009723/1-1742 GCSAILRFIN RDSAERALKR MENEDVFGNR IIVSFTPKSG ELCETKSSNA 601 650 ENSP00000379654/1-1742 IADKVKSPKK LKNPKLCLIK DASEQSSSAK ATPGKGSQAN SGSATKNTNV ENSBTAP00000027175/1-1742 TADKVKSPKK LKNPKLCLIK DISESPSSAK AAPGKGSQAN SGSATRNANV bmy_05431T0/1-1761 TADKAKSPKK LKNPKLCLIK DTSEPSSSAK AAPGKGSQAN SGSATKNTNV ENSTTRP00000009723/1-1742 TADKAKSPKK LKNPKLCLIK DTSEPSSSAK AAPGKGSQAN SGSATKNTNV 651 700 ENSP00000379654/1-1742 KSLQELCRME SKTGHRNSEH QQGHLRLVVP THGNSSAAVS TPKNSGVAEP ENSBTAP00000027175/1-1742 KSLQELCRLE SKTGTRSSEP QQGHLRLGAP PHRSSSAAAP APKAPGLAES bmy_05431T0/1-1761 KSLQELCRME SKTGTRSSEP QQGHLRPVAP PHRNSSAAVP TPKTSGVAES ENSTTRP00000009723/1-1742 KSLQELCRME SKTGTRSSEP QQGHLRPVAP PHRNSSAAAP TPKTSGVAES 701 750 ENSP00000379654/1-1742 VYKTSQKKEN LSARSVTSSP VEKKDKEETV FQVSYPSAFS KLVASRQVSP ENSBTAP00000027175/1-1742 VYKTNPKKES LGARSVTSSP VEKKEKEETL FQVSYPSAFS KLIASRQVSP bmy_05431T0/1-1761 VYKTNPKKEN LSTRSVTSSP VEKKDKEETL FQVSYPSAFS KLIASRQVGP ENSTTRP00000009723/1-1742 VYKTNPKKEN LCTRSVTSSP VDKKDKEETL FQVSYPSAFS KLIASRQVGP 751 800 ENSP00000379654/1-1742 LLASQSWSSR SMSPNLLNRA SPLAFNIANS SSEADCPDPF ANGADVQVSN ENSBTAP00000027175/1-1742 LLTAQPWSSR NLSPNLLNRA SPLAFNAAHS SVGADGPDPF AHGVDVQISN bmy_05431T0/1-1761 LLTPQSWSSR SMSPNLLNRA SPLAFNAANS SIGADCPDPF ANGADIQISN ENSTTRP00000009723/1-1742 LLTPQSWSSR SMSPNLLNRA SPLAFNAANS SVGADCPDPF ANGADIQISN 801 850 ENSP00000379654/1-1742 IDYRLSRKEL QQLLQEAFAR HGKVKSVELS PHTDYQLKAV VQMENLQDAI ENSBTAP00000027175/1-1742 LDYRLSRKEL QQLMQEAFSR HGKVKSVELS PHTDYQLKAV VQMENLQEAI bmy_05431T0/1-1761 LDYRLSRKEL QQLMQEAFSR HGKVKSVELS PHTDYQLKAV VQMENLQEAI ENSTTRP00000009723/1-1742 LDYRLSRKEL QQLMQEAFSR HGKVKNVELS PHTDYQLKAV VQMENLQEAI 851 900 ENSP00000379654/1-1742 GAVNSLHRYK IGSKKILVSL ATGAASKSLS LLSAETMSVL QDAPACCLPL ENSBTAP00000027175/1-1742 GAVNSLHRYK IGSKKILVSL ATGAANKSLS LLSAETMSIL QDAPACCLPL bmy_05431T0/1-1761 SAVNSLHRYK IGNKKILVSL ATGAANKSLS LLSAETMSIL QDAPACCLPL ENSTTRP00000009723/1-1742 SAVNSLHRYK IGSKKILVSL ATGAANKSLS LLSAETMSIL QDAPACCLPL 901 950 ENSP00000379654/1-1742 FKFTDIYEKK FGHKLNVSDL YKLTDTVAIR EQGNGRLVCL LPSSQARQSP ENSBTAP00000027175/1-1742 FKFTDIYEKK FGHRLNVSDL YKLTDTVAIR EQGNGRLVCL LPSSQARQSP bmy_05431T0/1-1761 FKFTDIYEKK FGHRLNVSDL YKLTDTVAIR EQGNGRLVCL LPSSQARQSP ENSTTRP00000009723/1-1742 FKFTDIYEKK FGHRLNVSDL YKLTDTVAIR EQGNGRLVCL LPSSQARQSP 951 1000 ENSP00000379654/1-1742 LGSSQSHDGS STNCSPIIFE ELEYHEPVCR QHCSNKDFSE HEFDPDSYKI ENSBTAP00000027175/1-1742 LGSSQSHDGS STNCSPIIFE ELEYHEPVCR QHCPNKDFSE HEFDPDSYKI bmy_05431T0/1-1761 LGSSQSHDGS STNCSPIIFE ELEYHEPVCR QHCPNKDFSE HEFDPDSYKI ENSTTRP00000009723/1-1742 LGSSQSHDGS STNCSPIIFE ELEYHEPVCR QHCPNKDFSE HEFDPDSYKI 1001 1050 ENSP00000379654/1-1742 PFVILSLKTF APQVHSLLQT HEGTVPLLSF PDCYIAEFGD LEVVQENQG- ENSBTAP00000027175/1-1742 PFVILSLKTF APQVHSLLQT HEGTVPLLSF PDCYAAEFGE LEIVQENRGG bmy_05431T0/1-1761 PFVILSLKTF APQVHSLLQT HEGTVPLLSF PDCYAAEFGE LEAVQEGRGG ENSTTRP00000009723/1-1742 PFVILSLKTF APQVHSLLQT HEGTVPLLSF PDCYAAEFGE LEVVQENRGG 1051 1100 ENSP00000379654/1-1742 GVPLEHFITC VPGVNIATAQ NGIKVVKWIH NKPPPPNTDP WLLRSKSPVG ENSBTAP00000027175/1-1742 GVPLEHLITC VPGVNIATAQ NGVKVVKWIH NKPPPPNTDP WLLRSKSPVG bmy_05431T0/1-1761 GVPLEHLVTC VPGVNIATAQ NGVKVVKWIH NKPPPPNTDP WLLRSKSPVG ENSTTRP00000009723/1-1742 GVPLEHLITC VPGVNIATAQ NGIKVVKWIH NKPPPPNTDP WLLRSKSPVG 1101 1150 ENSP00000379654/1-1742 NPQLIQFSRE VIDLLKSQPS CVIPISHFIP SYHHHFAKQC RVSDYGYSKL ENSBTAP00000027175/1-1742 NPQLIQFSRE VIDLLKNQPS CVIPISNFIP SYHHHFAKQC RVSDYGYSKL bmy_05431T0/1-1761 NPQLIQFSRE VIDLLKSQPS CVIPISNFIP SYHHHFAKQC RVSDYGYSKL ENSTTRP00000009723/1-1742 NPQLIQFSRE VIDLLKSQPS CVIPISNFIP SYHHHFAKQC RVSDYGYSKL 1151 1200 ENSP00000379654/1-1742 IELLEAVPHV LQILGMGSKR LLTLTHRAQV KRFTQDLLKL LKSQASKQVI ENSBTAP00000027175/1-1742 IELLEAVPHV LQILGMGSKR LLTLTHRAQV KRFTQDLLKL LKSQASKQVI bmy_05431T0/1-1761 IELLEAVPHV LQILGMGSKR LLTLTHRAQV KRFTQDLLKL LKSQASKQVI ENSTTRP00000009723/1-1742 IELLEAVPHV LQILGMGSKR LLTLTHRAQV KRFTQDLLKL LKSQASKQVI 1201 1250 ENSP00000379654/1-1742 VREFSQAYHW CFSKDWDVTE YGVCELIDIV SEIPDTTICL SQQDNEMVIC ENSBTAP00000027175/1-1742 VKEFAQAYHW CFSKDWDVTE YGVCELIDII SEIPDTTICL SQQDSEAMIC bmy_05431T0/1-1761 VREFAQAYHW CFSKDWDVTE YGVCELIDIX SEIPDTTICL SQQDNEMVIC ENSTTRP00000009723/1-1742 VREFTQAYHW CFSKDWDVTE YGVCELIDIV SEIPDTTICL SQQDNEMVIC 1251 1300 ENSP00000379654/1-1742 IPKRERTQDE IERTKQFSKD VVDLLRHQPH FRMPFNKFIP SYHHHFGRQC ENSBTAP00000027175/1-1742 IPRRERTQDE IERTKQFSKD VVDLLRHQPH FRMPFNKFIP SYHHHFGRQC bmy_05431T0/1-1761 IPKRERTQDE IERTKQFSKD VVDLLRHQPH FRMPFNKFIP SYHHHFGRQC ENSTTRP00000009723/1-1742 IPKRERTQDE IERTKQFSKD VVDLLRHQPH FRMPFNKFIP SYHHHFGRQC 1301 1350 ENSP00000379654/1-1742 KLAYYGFTKL LELFEAIPDT LQVLECGEEK ILTLTEVERF KALAAQFVKL ENSBTAP00000027175/1-1742 KLAYYGFTKL LELFEAIPDI LQVLECGEEK ILTLTEVERF KALAAQFVKL bmy_05431T0/1-1761 KLAYYGFTKL LELFEAIPDI LQVLECGEEK ILTLTEVERF KALAAQFVKL ENSTTRP00000009723/1-1742 KLAYYGFTKL LELFEAIPDI LQVLECGEEK ILTLTEVERF KALAAQFVKL 1351 1400 ENSP00000379654/1-1742 LRSQKDNCLM MTDLLTEYAK TFGYTFRLQD YDVSSISALT QKLCHVVKVA ENSBTAP00000027175/1-1742 LRSQKDNCLM MTDLLKEYAK TFGYTFRLQD YDVSSVSALT QKLCHVVKVA bmy_05431T0/1-1761 LRSQKDNCLM MTDLLTEYAK TFGYTFRLQD YDVSSVSALT QKLCHVVKVA ENSTTRP00000009723/1-1742 LRSQKDNCLM MTDLLTEYAK TFGYTFRLQD YDVSSVSALT QKLCHVVKVA 1401 1450 ENSP00000379654/1-1742 DIESGRQIQL INRKSLRSLT AQLLVLLMSW EGTTHLSVEE LKRHYESTHN ENSBTAP00000027175/1-1742 DMESGKQIQL INRKSLRALT AQLLVLLMSW EGTTHLSVDE LKRHYESTHS bmy_05431T0/1-1761 DMESGKQIQL INRKSLRSLT AQLLVLLMSW EGTAHLSVDE LKRHYETTHS ENSTTRP00000009723/1-1742 DMESGKQIQL INRKSLRALT AQLLVLLMSW EGTAHLSVDE LKRHYETTHS 1451 1500 ENSP00000379654/1-1742 TPLNPCEYGF MTLTELLKSL PYLV------ ---------- EVFTNDKMEE ENSBTAP00000027175/1-1742 TPLNPCEYGF MTLTELLKSL PYLVE----- ---------D QVFTNDKTEE bmy_05431T0/1-1761 TPLNPCEYGF MTLTELLKSL PYLVENSDVV VLHHGVPRGD EVFTNDKTEE ENSTTRP00000009723/1-1742 TPLNPCEYGF MTLTELLKSL PYLV------ ---------- EVFTNDKTEE 1501 1550 ENSP00000379654/1-1742 CVKLTSLYLF AKNVRSLLHT YHYQQIFLHE FSMAYTKYVG ETLQPKTYGH ENSBTAP00000027175/1-1742 CVKLTSLYLF AKNVRSLLHT YHYQQLFLHE FSMAYSKYVG ETLQPKTYGF bmy_05431T0/1-1761 CVKLTSLYLF AKNVRSLLHT YHYQQLFLHE FSMAYTKYVG ETLQPKTYGY ENSTTRP00000009723/1-1742 CVKLTSLYLF AKNVRSLLHT YHYQQLFLHE FSMAYTKYVG ETLQPKTYGY 1551 1600 ENSP00000379654/1-1742 SSVEELLGAI PQVVWIKGHG HKRIVVLKND MKSRLSSLSL SPANHENQPS ENSBTAP00000027175/1-1742 SSVEELLGAI PQVVWIKGHG HKRIVVLKND MKSRVNSLGP SPASHETQPS bmy_05431T0/1-1761 SSVEELLGAI PQVVWIKGHG HKRIVVLKND MKSRVSSLGL PSASHETRPS ENSTTRP00000009723/1-1742 SSVEELLGAI PQVVWIKGHG HKRIVVLKND MKSRVSSLGL PSASHETRPS 1601 1650 ENSP00000379654/1-1742 EGERILEVPE SHTASELKLG ADGSGPSHTE QELLRLTDDS PVDLLCAPVP ENSBTAP00000027175/1-1742 APERILEVPE SPPASELRLG VGGDGPHPAE QELLRLTDDS PVDLLCAPVP bmy_05431T0/1-1761 ATERILEVPE SHTALELKLR AGGDGPHPVE QELLRLTNDS PVDLLCAPVP ENSTTRP00000009723/1-1742 ATERILEVPE SRTALELKLG AGGDEPCPVE QELLRLTSDS PVDLLCAPVP 1651 1700 ENSP00000379654/1-1742 SCLPSPQLRP DPVILQSADL IQFEERPQEP SEIMILNQEE KMEIPIPGKS ENSBTAP00000027175/1-1742 SCLPSPQLRP DPVVLQAADL IWFEEHPQEP SEIMILNQEE KIEIPVPIRN bmy_05431T0/1-1761 SCLPSPQLRP DPVILQSADL IQFEEHPQEP SEIIVLNQEE KMEIPIPIKN ENSTTRP00000009723/1-1742 SCLPSPQLRP DPVILQSADL IQFEERPQEP SEIMVLNQEE KMEIPIPMKN 1701 1750 ENSP00000379654/1-1742 KTLTSDSSSS CISAAVPVPP CPSSETSESL LSKDPVESPA KKQPKNRVKL ENSBTAP00000027175/1-1742 ENLPPDPSSP GVSAAVPAPP SPSSETPESL LSKDPTESPA KKQPKNRVKL bmy_05431T0/1-1761 ENLPSDSSSS GVSAAVPVPP CLSTETPGLL LSKDPVESPA KKQPKNRVKL ENSTTRP00000009723/1-1742 ENLPSDSSSS GISAAVPVPP CLSTETPESL LSKDPVESPA KKQPKNRVKL 1751 1800 ENSP00000379654/1-1742 AANFSLAPIT KL ENSBTAP00000027175/1-1742 AANFSFAPIT KL bmy_05431T0/1-1761 AANFSFAPIT KL ENSTTRP00000009723/1-1742 AANFSFAPIT KL