KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 4  Type: P  Thu May 15 17:31:32 2014  Check: 00 ..

 Name: BACU007244/1-165          Len:    227  Check:  4748  Weight:  1.00
 Name: ENSP00000357904/1-227     Len:    227  Check:  9729  Weight:  1.00
 Name: ENSBTAP00000027183/1-225  Len:    227  Check:  7294  Weight:  1.00
 Name: bmy_11125T0/1-206         Len:    227  Check:  1446  Weight:  1.00

//


                          1                                                   50
BACU007244/1-165          ---------- ---------- ---------- ---------- ---------- 
ENSP00000357904/1-227     MASPSRQPPP GGSGLLQGSR ARSYGSLVQS ACSPVRERRL EHQLEPGDTL 
ENSBTAP00000027183/1-225  MASPSRQAPL GGSGLLHGSR ARSYGSLVQS ACSPVRERRL EHQLAPGDTL 
bmy_11125T0/1-206         MASPSRQAPL GGSGLLQGSR ARSYGSLVQS ACSPVRERRL EHQLAPGDTL 


                          51                                                 100
BACU007244/1-165          ---------- MEQIKRANRL YTNDSIFLKK TLYIPILTEP RDLFNGLDSE 
ENSP00000357904/1-227     AGLALKYGVT MEQIKRANRL YTNDSIFLKK TLYIPILTEP RDLFNGLDSE 
ENSBTAP00000027183/1-225  AGLALKYGVT MEQIKRANRL YTNDSIFLKK TLYIPILTEP RDLFNGLDSE 
bmy_11125T0/1-206         AGLALKYGVT ---------- ---------K TLYIPILTEP RDLFNGLDSE 


                          101                                                150
BACU007244/1-165          EEKDGEEEVQ PSKDEVGPHS AERKKQETGS GRANGEVLPT PGQE--PPIH 
ENSP00000357904/1-227     EEKDGEEKVH PSNSEVWPHS TERKKQETGA GRANGEVLPT PGQETPTPIH 
ENSBTAP00000027183/1-225  EEKDGEEAVQ PSKDEVRPHS AERKKRERGL GHANGEPLPT AGQE--PARH 
bmy_11125T0/1-206         EEKDGEEEVQ PSKDEVGPHS AERKKQETGS GRANGEVLPT PGQE--PPIH 


                          151                                                200
BACU007244/1-165          DLSASDFLKK LDSQISLSKK AAAQKLKKGE SGIPGEDSGL HLSSPRMQQR 
ENSP00000357904/1-227     DLSASDFLKK LDSQISLSKK AAAQKLKKGE NGVPGEDAGL HLSSPWMQQR 
ENSBTAP00000027183/1-225  DLSASDFLKK LDSQISLSKK AAAQKLKKGE SGIPGEDSSL HLSSPRMQQR 
bmy_11125T0/1-206         DLSASDFLKK LDSQISLSKK AAAQKLKKGE SGIPGEDSGL HLSSPRMQQR 


                          201                                                250
BACU007244/1-165          AVLGPVPLTR TSRTRTLRDQ EDEIFKL 
ENSP00000357904/1-227     AVLGPVPLTR TSRTRTLRDQ EDEIFKL 
ENSBTAP00000027183/1-225  AVLGPVPLTQ TSRTRTLRDQ EDEIFKL 
bmy_11125T0/1-206         AVLGPVPLTR TSRTRTLRDQ EDEIFKL