KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:31:34 2014 Check: 00 .. Name: BACU000171/1-673 Len: 677 Check: 915 Weight: 1.00 Name: ENSP00000241125/1-435 Len: 677 Check: 3382 Weight: 1.00 Name: bmy_11028T0/1-410 Len: 677 Check: 4182 Weight: 1.00 Name: ENSBTAP00000027188/1-407 Len: 677 Check: 4712 Weight: 1.00 // 1 50 BACU000171/1-673 MGDWSFLGRL LENAQEHSTV IGKVWLTVLF IFRILVLGAA AEEVWGDEQS ENSP00000241125/1-435 MGDWSFLGRL LENAQEHSTV IGKVWLTVLF IFRILVLGAA AEDVWGDEQS bmy_11028T0/1-410 MGDWSFLGRL LENAQEHSTV IGKVWLTVLF IFRILVLGAA AEEVWGDEQS ENSBTAP00000027188/1-407 MGDWSFLGRL LENAQEHSTV IGKVWLTVLF IFRILVLGAA AEEVWGDEQS 51 100 BACU000171/1-673 DFTCNTQQPG CENVCYDRAF PISHVRFWVL QIIFVSTPTL IYLGHVLHLV ENSP00000241125/1-435 DFTCNTQQPG CENVCYDRAF PISHIRFWAL QIIFVSTPTL IYLGHVLHIV bmy_11028T0/1-410 DFTCNTQQPG CENVCYDRAF PISHVRFWVL QIIFVSTPTL IYLGHVLHLV ENSBTAP00000027188/1-407 DFTCNTQQPG CENVCYDRAF PISHVRFWVL QIIFVSTPTL IYLGHVLHLV 101 150 BACU000171/1-673 RMEEKRKER- EEERLKTDGA ---APGQDRP PVRDDRGKVR LAGALLRTYV ENSP00000241125/1-435 RMEEKKKERE EEEQLKRESP SPKEPPQDNP SSRDDRGRVR MAGALLRTYV bmy_11028T0/1-410 RMEEKRKER- EEERLKTDGA ---APGQDRP PVRDDRGKVR LAGALLRTYV ENSBTAP00000027188/1-407 RMEEKRKER- EEEPPKAAGP ---EGHQDPA PVRDDRGKVR IAGALLRTYV 151 200 BACU000171/1-673 FNIIFKTLFE VGFIAGQYFL YGFQLKPLYR CDRWPCPNTV DCFISRPTEK ENSP00000241125/1-435 FNIIFKTLFE VGFIAGQYFL YGFELKPLYR CDRWPCPNTV DCFISRPTEK bmy_11028T0/1-410 FNIIFKTLFE VGFIAGQYFL YGFQLKPLYR CDRWPCPNTV DCFISRPTEK ENSBTAP00000027188/1-407 FNIIFKTLFE VGFIAGQYFL YGFQLKPLYR CDRWPCPNTV DCFISRPTEK 201 250 BACU000171/1-673 TIFILFMLAV ACVSLLLNML EIYHLGWKKL KQGMTDPLPP DTPGSSVRAA ENSP00000241125/1-435 TIFIIFMLAV ACASLLLNML EIYHLGWKKL KQGVTSRLGP DASEAPLGTA bmy_11028T0/1-410 TIFILFMLAV ACVSLLLNML EIYHLGWKKL KQGMTDPYPP DTPGSSVRAA ENSBTAP00000027188/1-407 TIFILFMLAV ACVSLLLNVL EIYHLGWKKL KQGMTSPFRP DTPGSRAGSV 251 300 BACU000171/1-673 KPGCGGPLLL PSHSNPPALT VGFPPYYAPS ASSLGQASAP GYPXXXXXXX ENSP00000241125/1-435 DPP---P--L PPSSRPPAVA IGFPPYYAHT AAPLGQARAV GYPGAPPPAA bmy_11028T0/1-410 KPGCGSPLLL PSHSNPPALT VGFPPYYAPS ASSLGQASAP GYPEPPPPA- ENSBTAP00000027188/1-407 KPVGGSPLLL PPNSAPPAVT IGFPPYYAPS ASSLGQASAP GYPEPPPPA- 301 350 BACU000171/1-673 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000241125/1-435 DFKLLALTEA RGKGQSAKLY NGHHHLLMTE QNWANQAAER QPPALKAYPA bmy_11028T0/1-410 -----ALPGT PGEGHPAGSP GGHQHLLATA PNWADREAEQ QTSAGKASPP ENSBTAP00000027188/1-407 -----ALPGT PGT--PGG-- GGNQGLRARA QNWANREAEP QTSSRKASPP 351 400 BACU000171/1-673 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000241125/1-435 ASTPAAPSPV GSSSPPLAHE AEAGAAPLLL DGSGSSLEGS ALAGTPEEEE bmy_11028T0/1-410 ASAPAAPKPP -AGPQQPPPE GGAGS----- ---------- ----SGDSDG ENSBTAP00000027188/1-407 APTPPAAESP GGGPQQSLPE GAAGS----- ---------- ----SGDSDG 401 450 BACU000171/1-673 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000241125/1-435 QAVTTAAQM- ---------- ---------- ---------- ---------- bmy_11028T0/1-410 EGAVTAVEL- ---------- ---------- ---------- ---------- ENSBTAP00000027188/1-407 EGAVTAVEL- ---------- ---------- ---------- ---------- 451 500 BACU000171/1-673 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000241125/1-435 ---------- ---------- ---------- ---------- ---------- bmy_11028T0/1-410 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027188/1-407 ---------- ---------- ---------- ---------- ---------- 501 550 BACU000171/1-673 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000241125/1-435 ---------- ---------- ---------- ---------- ---------- bmy_11028T0/1-410 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027188/1-407 ---------- ---------- ---------- ---------- ---------- 551 600 BACU000171/1-673 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000241125/1-435 ---------- ---------- ---------- ---------- ---------- bmy_11028T0/1-410 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027188/1-407 ---------- ---------- ---------- ---------- ---------- 601 650 BACU000171/1-673 XXXXXXXXXX XXXXXXFSQQ PPRPAPRPPP QVLRPPRGAV LWWESRGVCG ENSP00000241125/1-435 ---------- --------HQ PPLP-LGDPG RASKASRAS- ---------S bmy_11028T0/1-410 ---------- --------HA PPEL-PADPG RSSKASKSS- ---------G ENSBTAP00000027188/1-407 ---------- --------HA PPEP-PADPG RSSKASKSS- ---------G 651 700 BACU000171/1-673 TSVRGNSVFL SYAPIPAPEP LWTAQQV ENSP00000241125/1-435 GRARPEDLAI ---------- ------- bmy_11028T0/1-410 GRARASDLAI ---------- ------- ENSBTAP00000027188/1-407 GRARAGDLAI ---------- -------