KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:31:36 2014 Check: 00 .. Name: ENSTTRP00000003485/1-547 Len: 557 Check: 4627 Weight: 1.00 Name: bmy_18690T0/1-470 Len: 557 Check: 5660 Weight: 1.00 Name: ENSP00000291670/1-541 Len: 557 Check: 1494 Weight: 1.00 Name: ENSBTAP00000027193/1-548 Len: 557 Check: 5176 Weight: 1.00 // 1 50 ENSTTRP00000003485/1-547 -------MSQ LVECVPNFSE GKNQEVIDAI SRAVVQTPGC VLLDVDAGPS bmy_18690T0/1-470 -------MSQ LVECVPNFSE GKNQEVIDAI SRAVVQTPGC VLLDVDAGPS ENSP00000291670/1-541 -------MSQ LVECVPNFSE GKNQEVIDAI SGAITQTPGC VLLDVDAGPS ENSBTAP00000027193/1-548 VWVRVWTMSR LVECVPNFSE GNNQEVIDAI ARAVAQTPGC TLLDVDAGPS 51 100 ENSTTRP00000003485/1-547 TNRTVYTFVG RPEDVVEGAL NAARVAHRLI DMGRHRGEHP RMGALDVCPF bmy_18690T0/1-470 TNRTVYTFVG RPEDVVEGAL NAARAAHRLI DMGRHRGEHP RMGALDVCPF ENSP00000291670/1-541 TNRTVYTFVG PPECVVEGAL NAARVASRLI DMSRHQGEHP RMGALDVCPF ENSBTAP00000027193/1-548 TNRTVYTFVG RPEDVVEGAL NAARTAHRLI DMSRHRGEHP RMGALDVCPF 101 150 ENSTTRP00000003485/1-547 IPVRGVTMDE CVLCAQAFGQ RLAEELGVPV YLYGEAARTA SRQSLPAIRA bmy_18690T0/1-470 IPVRGVTMDE CVLCAQAFGQ RLAEELGVPV YLYGEAARTA SRQSLPAIRA ENSP00000291670/1-541 IPVRGVSVDE CVLCAQAFGQ RLAEELDVPV YLYGEAARMD SRRTLPAIRA ENSBTAP00000027193/1-548 IPVRGVTMDE CVLCAQAFGQ RLAEELGVPV YLYGEAARMT SRQSLPAIRA 151 200 ENSTTRP00000003485/1-547 GEY-ALPEKF KQAEWAPVFG PSSIVPSWGA TVTGAQKFLI AFNV-MLSTR bmy_18690T0/1-470 GEYEALPEKL KQAEWAPDFG PSSFVPSWGA TVTGARKFLI AFNVNLLSTR ENSP00000291670/1-541 GEYEALPKKL QQADWAPDFG PSSFVPSWGA TATGARKFLI AFNINLLGTK ENSBTAP00000027193/1-548 GEYEALPEKL KQAEWAPDFG PSSFIPSWGA TATGARKFLL AFNINLLSTK 201 250 ENSTTRP00000003485/1-547 EQAHRIALDL REQGRGAGQX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_18690T0/1-470 EQAHRIALDL REQGRGKDRP GRLRKVQGIG WYLDEKNLAQ VSMNLLDFEV ENSP00000291670/1-541 EQAHRIALNL REQGRGKDQP GRLKKVQGIG WYLDEKNLAQ VSTNLLDFEV ENSBTAP00000027193/1-548 EQAHRIALNL REQGRGKDQP GRLSKVQGIG WYLDEKNLAQ VSMNLLDFEV 251 300 ENSTTRP00000003485/1-547 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_18690T0/1-470 TGLHTVYEET CREAQGLSLP VVGSQLVGLV PLKALLDVAA FYCEKENLFV ENSP00000291670/1-541 TALHTVYEET CREAQELSLP VVGSQLVGLV PLKALLDAAA FYCEKENLFI ENSBTAP00000027193/1-548 TGLHTVYEET CREAQELSLP VVGSQLVGLV PLKALLDAAT FYCEQENLFL 301 350 ENSTTRP00000003485/1-547 XXXXXXXXXV VNRLGLDSLS PFNPKERIIE YLVPEVGPEQ SLVDQPLRTF bmy_18690T0/1-470 LEEGQRLRLV VNRLGLDSLS PFNPKERIIE YLVPEAGPEH SLVDQPLRTF ENSP00000291670/1-541 LEEEQRIRLV VSRLGLDSLC PFSPKERIIE YLVPERGPER GLGSKSLRAF ENSBTAP00000027193/1-548 LEEEQRLRLV VNRLGLDSLS PFNPKERIIE YLVPQDGPEQ SLVDQPLRAF 351 400 ENSTTRP00000003485/1-547 VREVGARSAA PGGGSVAAAS AAMGAALASM AGLMTYGRRQ FEHLDATVRR bmy_18690T0/1-470 VREVGARSAA PGGGSVAAAS AAMGAALASM AGLMTYGRRQ FEHLDATVRR ENSP00000291670/1-541 VGEVGARSAA PGGGSVAAAA AAMGAALGSM VGLMTYGRRQ FQSLDTTMRR ENSBTAP00000027193/1-548 IRAVGARSAA PGGGSVAAAS AAMGAALASM AGLMTYGRRQ FEHLDVTMRR 401 450 ENSTTRP00000003485/1-547 LVPPFHTALT ELTAMVDADA RAFEAYLKAT KLPKNTPEDK DRRAAALQEG bmy_18690T0/1-470 LIPPFHAAWA ELTTMVDADA RAFEAYL--- ---------- ----VSVQAG ENSP00000291670/1-541 LIPPFREASA KLTTLVDADA EAFTAYLEAM RLPKNTPEEK DRRTAALQEG ENSBTAP00000027193/1-548 LIPPFRAAVA ELTAMVDADA RAFEAYLKAT KLPKNTPEDK DRRAAALQEG 451 500 ENSTTRP00000003485/1-547 LRRAVAVPLA LAETVTSLWP ALQELALCAN LACRSDLQXX XXXXXXXXXX bmy_18690T0/1-470 LHHQ------ ---------- ---------- ---------P RRGSPEGEWG ENSP00000291670/1-541 LRRAVSVPLT LAETVASLWP ALQELARCGN LACRSDLQVA AKALEMGVFG ENSBTAP00000027193/1-548 LRQAVAVPLA LAETVASLWP ALRELALCVN LACRSDLQVA AKALETGVFG 501 550 ENSTTRP00000003485/1-547 XYFNVLINLK DVTDDAKDQP PAGSQDPGGT GAGPAGGPA- GVMAGRGTSL bmy_18690T0/1-470 RW-------- -----AVRGP EERKVGQGHR ERER------ GCHEHRCL-- ENSP00000291670/1-541 AYFNVLINLR DITDEAFKDQ IHHRVSSLLQ EAKTQAALVL DCLETRQE-- ENSBTAP00000027193/1-548 AYFNVLINLK DVTDDAFKDQ VRRRISSLLQ DAQRQAALVL DGLEARQE-- 551 600 ENSTTRP00000003485/1-547 DSASPGP bmy_18690T0/1-470 ------- ENSP00000291670/1-541 ------- ENSBTAP00000027193/1-548 -------