KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:31:38 2014 Check: 00 .. Name: ENSP00000387303/1-1382 Len: 1397 Check: 8030 Weight: 1.00 Name: ENSBTAP00000027199/1-1392 Len: 1397 Check: 2201 Weight: 1.00 Name: ENSTTRP00000006061/1-906 Len: 1397 Check: 6108 Weight: 1.00 Name: bmy_05906T0/1-918 Len: 1397 Check: 1116 Weight: 1.00 Name: BACU006309/1-1292 Len: 1397 Check: 7351 Weight: 1.00 // 1 50 ENSP00000387303/1-1382 MLRKLTIEQI NDWFTIGKTV TNVELLGAPP AFPAGAAREE VQRQDVAPGA ENSBTAP00000027199/1-1392 MLRKLTLDQI NDWFTIGKMV TNVELLGSPP AFPAEAARDE AQRRDAAPSS ENSTTRP00000006061/1-906 ---------- ---------- ---------- ---------- ---------- bmy_05906T0/1-918 ---------- ---------- ---------- ---------- ---------- BACU006309/1-1292 MTVSLASAPL GGWPFL---- ---------- ---------E SATGSVISFV 51 100 ENSP00000387303/1-1382 GPAAQAPALA QAPA----RP AAAFERSLSQ RSSEVEYINK YRQLEAQELD ENSBTAP00000027199/1-1392 DPEAEGQAES PAEAPVLSRP LHILCRLLGE KSADTEYIDK YRQLEAQEFY ENSTTRP00000006061/1-906 ---------- ---------- ---------- ---------- ---------- bmy_05906T0/1-918 ---------- ---------- ---------- ---------- ---------- BACU006309/1-1292 QWLFGVPWRE ENVLGLFMAC ISWYAWPLSQ KSSETEYINK YRKLEAQEFD 101 150 ENSP00000387303/1-1382 VCRSVQPTSG --PGPRPSLA KLSSVTCIPG TTYKYPDLPI SRYKEEVVSL ENSBTAP00000027199/1-1392 LYFLDHLISG LNPGPRPPLA KSSHVMRIPE TAYKYPELPI SRCKEEVISL ENSTTRP00000006061/1-906 ---------- ---------- ---------- ---------- ---------- bmy_05906T0/1-918 ---------- ---------- ---------- ---------- ---------- BACU006309/1-1292 VYGSGRSTSG --PGPRPPLA KSSNVMCIPE TTYKYPDLPI NRCKEEVVSL 151 200 ENSP00000387303/1-1382 IESNSVVIIH GATGSGKSTQ LPQYILDHYV QRSAYCSIVV TQPRKIGASS ENSBTAP00000027199/1-1392 IESNSVVIIH GATGSGKSTQ LPQYVLDHYL QRSAYCNIVV TQPRKIGASS ENSTTRP00000006061/1-906 ---------- ---------- ---------- ---------- ---------- bmy_05906T0/1-918 ---------- ---------- ---------- ---------- ---------- BACU006309/1-1292 IESNSVVIIH GATGSGKSTQ LPQYILDHYL QRSTYCNIVV TQPRKIGASS 201 250 ENSP00000387303/1-1382 IARWISKERA WTLGGVVGYQ VGLEKIATED TRLIYMTTGV LLQKIVSAKS ENSBTAP00000027199/1-1392 IARWISRERG WVLGGLVGYQ VGLEKIATED TKLIYMTTGV LLQKIVSAKS ENSTTRP00000006061/1-906 ---------- ---------- ---------- ---------- ---------- bmy_05906T0/1-918 ---------- ---------- ---------- ---------- ---------- BACU006309/1-1292 IARWISRERA WALGGLVGYQ VGLEKIATED TKLIYMTTGV LLQKIVSAKS 251 300 ENSP00000387303/1-1382 LMEFTHIIID EVHERTEEMD FLLLVVRKLL RTNSRFVKVV LMSATISCKE ENSBTAP00000027199/1-1392 LVEFTHVFID EVHERTEEMD FLLLVVRKLL RTNSRFVKVV LMSATINCRE ENSTTRP00000006061/1-906 ---------- ---------- ---------- ---------- -MSATINCKE bmy_05906T0/1-918 ---------- ---------- ---------- ---------- ---------- BACU006309/1-1292 LMEFTHVFID EVHERTEEMD FLLLVVRKLL RTNSRFVKVV LMSATINCKE 301 350 ENSP00000387303/1-1382 FADYFAVPVQ NKMNPAYIFE VEGKPHSVEE YYLNDLEHIH HSKLSPHLLE ENSBTAP00000027199/1-1392 FADYFAVPVQ NKMSPAYIFE VEGKPFSIEE YYLNDLEHVH HSRLSPHLLE ENSTTRP00000006061/1-906 FADYFAVPVQ NKVNPAYIFE VEGKPYAVEE YYLNDLEHVH HSRLSPHLLE bmy_05906T0/1-918 ---------- ---------- ---------- ---------- ---------- BACU006309/1-1292 FADYFAVPVQ NKMNPAYMFE VEGKPYSVEE YYLNDLEHIH HNRLSPHLLE 351 400 ENSP00000387303/1-1382 EPVITKDIYE VAVSLIQMFD DLDMKESGNK AWSGAQFVLE RSSVLVFLPG ENSBTAP00000027199/1-1392 EPVITRAVYE VAISLIQMFD DLDMKESGAK TPSGSPFLSE RSSVLVFLPG ENSTTRP00000006061/1-906 EPVITKDIYE VAVSLIQMFD DLDMKESGTK TWSGTPFVSE RSSVLVFLPG bmy_05906T0/1-918 ---------- ---------- ---------- ---------- ---------- BACU006309/1-1292 EPVITKDIYE VAVSLIQMFD GLDMKESGTK TWSGTPFVSE RSSVLVFLPG 401 450 ENSP00000387303/1-1382 LGEINYMHEL LTSLVHKRLQ VYPLHSSVAL EEQNNVFLSP VPGYRKIILS ENSBTAP00000027199/1-1392 LGEINYMHEL LTNMVHKRLQ VYPLHSSVTL EEQNNVFLSP VPGYRKIILS ENSTTRP00000006061/1-906 LGEINYMHEL LTNMVHKRLQ VYPLHSSVTL EEQNNVFLSP VPGYRKVILS bmy_05906T0/1-918 ---------- --------LQ VYPLHSSVTL EEQNNVFLSP VPGYRKIILS BACU006309/1-1292 LGEINYMHEI LTNMVHKRLQ VYPLHSSVTL EEQNNVFLSP VPGYRKIILS 451 500 ENSP00000387303/1-1382 TNIAESSVTV PDVKYVIDFC LTRTLVCDED TNYQSLRLSW ASKTSCNQRK ENSBTAP00000027199/1-1392 TNIAESSVTV PDVKYVIDFC LTRTLVCDED TNYQSLRLSW ASKTSCEQRK ENSTTRP00000006061/1-906 TNIAESSVTV PDVKYVIDFC LTRTLVCDED TNYQSLRLSW ASKTSCDQRK bmy_05906T0/1-918 TNIAESSVTV PDVKYEFE-- ---------- ---------- -----CFSFA BACU006309/1-1292 TNIAESSVTV PDVKY----- ---------- ---------- ---------- 501 550 ENSP00000387303/1-1382 GRAGRVSRGY CYRLVHKDFW DNSIPDHVVP EMLRCPLGST ILKVKLLDMG ENSBTAP00000027199/1-1392 GRAGRVSKGY CYRLVHKDFW DNSIPNHVIP EMLRCPLGST ILKVKLLDMG ENSTTRP00000006061/1-906 GRAGRVSKGY CYRLIYKDFW DSSIPDHVIP EMLRCPLGST ILKVKLLDMG bmy_05906T0/1-918 GRAGRVSKGY CYRLIYKDFW DSSIPDHVIP EMLRCPLGST ILKVKLLDMG BACU006309/1-1292 GRAGRVSKGC CYRLIYKDFW DSSIPDHVIP EMLRCPLGST ILKVKLLDMG 551 600 ENSP00000387303/1-1382 EPRALLATAL SPPGLSDIER TILLLKEVGA LAVSGQREDE NPHDGELTFL ENSBTAP00000027199/1-1392 EPRALLATAL SPPSLSDIER TILLLKEVGA LAVSGRREDD NPHDGELTFL ENSTTRP00000006061/1-906 EPRALLATAL SPPSLSDIER TILLLKEVGA LAVSGPRGDE NPHDGELTFL bmy_05906T0/1-918 EPRALLATAL SPPSLSDIER TILLLKEVGA LAVSGQREDE NPHDGELTFL BACU006309/1-1292 EPRALLATAL SPPSLSDIER TILLLKEVGA LAVSRQREDE NPHDGELTFL 601 650 ENSP00000387303/1-1382 GRVLAQLPVN QQLGKLIVLG HVFGCLDECL I---IAAALS LKNFFAMPFR ENSBTAP00000027199/1-1392 GRVLAQLPVS QQLGKLIVLG HVFGCLDECL IIVLIAASLS LKNFFAMPFR ENSTTRP00000006061/1-906 GRVLAQLPVN QQLGKLIVLG HVFGCLDECL I---IAASLS LKNFFAMPFR bmy_05906T0/1-918 GRVLAQLPVN QQLGKLIVLG HVFGCLDECL I---IAASLS LKNFFVMPFR BACU006309/1-1292 GRVLAQLPVN QQLGKLIVLG HVFGCLDECL I---IAVI-- ---------- 651 700 ENSP00000387303/1-1382 QHLDGYRNKV NFSGSSKSDC IALVEAFKTW KACRQTGELR YPKDELNWGR ENSBTAP00000027199/1-1392 QHLDGYRNKV NFAGSSRSDC IALVEAFRAW QTCRQRGELR HPKDELDWGR ENSTTRP00000006061/1-906 QHLDGYRNKV DFCGNSKSDC AALVEAFRAW QTCRQRGELR HPKDELDWGR bmy_05906T0/1-918 QHLDGYRNKV DFCGNSKSDC AALVEAFRAW QTCRQRGELR HPKDELDWGR BACU006309/1-1292 ---------- ---------C YINIEYY--- -------PFM YLKDELDWGR 701 750 ENSP00000387303/1-1382 LNYIQIKRIR EVAELYEELK TRISQFNMHV DSRRPVMDQE YIYKQRFILQ ENSBTAP00000027199/1-1392 LNYIQIKRIR EVAELYEELK TRVSQFNMYV DSRRPVLDQE YKYKQRFILQ ENSTTRP00000006061/1-906 LNYIQIKRIR EVAELYEELK TRISQFNMYV DSRRPVMDQE YTYKQRFILQ bmy_05906T0/1-918 LNYIQIKRIR EVAELYEELK TRISQFNMYV DSRRPVMDQE YTYKQRFILQ BACU006309/1-1292 LNYIQIKRIR EVAELYEELK TRISQFNMYV DSRRPVMDQE YTYKQRFILQ 751 800 ENSP00000387303/1-1382 VVLAGAFYPN YFTFGQPDEE MAVRELAGKD PKTTVV---- -LKHIPPYGF ENSBTAP00000027199/1-1392 VVLAGAFYPN YFTFGQPDEE IATRELAGKD PKTTIV---- -LKHIPPYGF ENSTTRP00000006061/1-906 VVLAGAFYPN YFTFGHPDEE MAVRELAGKD PKTTIV---- -LKHVPPYGF bmy_05906T0/1-918 VVLAGAFYPN YFTFGQPDEE MAVRELAGKD PKTTIVCGVL QLKHVPPYGF BACU006309/1-1292 VVLAGAFYPN YFTFGQPDEE MAVRELAGKD PKTTIVCGVL QLKHVPPYGF 801 850 ENSP00000387303/1-1382 LYYKQLQSLF RQCGQVKSIV FDGA-KAFVE FSRNPTERFK TLPAVYMAIK ENSBTAP00000027199/1-1392 LYHQQLQSLF RQCGQVKSIV FDGANRAFVE FSRNPTERFK TLPAVYMAIK ENSTTRP00000006061/1-906 LYYKQLQSLF RQCGQVRSIV FDGA-KAFVE FSRNPTERFK TLPAVYMAIK bmy_05906T0/1-918 LYYKQLQSLF RQCGQVRSIV FDGA-KAFVE FSRNPTERFK TLPAVYMAIK BACU006309/1-1292 LYYKQLQSLF RQCGQVRSIV FDGA-KAFVE FSRNPTERFK TLPAVYMAIK 851 900 ENSP00000387303/1-1382 MSQLKVSLEL SVHSAEEIEG KVQGMNVSKL RNTRVNVDFQ KQTVDPMQVS ENSBTAP00000027199/1-1392 MSQLKVSLEL SVHSAEEIEA KVQGGAVSKL RNTRVNVDFQ KKTVDPVQVS ENSTTRP00000006061/1-906 MSQLKISLEL SVHSAEEIEG KVQGGAVSKL RNTRVNVDFQ KQTVDPVQVS bmy_05906T0/1-918 MSQLKVSLEL SVHSAEEIEG KVQGGAVSKL RNTRVNVDFQ KQTVDPAQVS BACU006309/1-1292 MSQLKVSLKL SVHSAEEIEG KVQGGAVSKL RNTRVNVDFQ KQTVDPAQVS 901 950 ENSP00000387303/1-1382 FNTSDRSQTV TDLLLTIDVT EVVEVGHFWG YRIDENNSEI LKKLTAEINQ ENSBTAP00000027199/1-1392 FNMVDQSRTI TDLLLTVEVT EVVEVGHFWG YRTDEKNWEF LKSLAAEINR ENSTTRP00000006061/1-906 FNTLDRSQLM TDLFLTIDVT EVVEVGHFWG YRIDEKSSEI LKKLTAEISC bmy_05906T0/1-918 FNTLDRSQMI TDLLLTIDVT EVVEVGHFWG YRIDEKSSEI LEKLTAEISR BACU006309/1-1292 FSTLDRSQMI TDLLLTIDVT EVVEVGHFWG YRIDEKSSEI LEKLTAEISR 951 1000 ENSP00000387303/1-1382 LTLVPLPTHP HPDLVCLAPF ADFDKQRYFR AQVLYVSGNS AEVFFVDYGN ENSBTAP00000027199/1-1392 LTLVPLPVHP HPDQVCLAPF ADSDKESYFR AQVLYVSGNS AEVFFVDYGN ENSTTRP00000006061/1-906 LKLVPLPVHP HPDLVCLAPF ADFDKESYFR AQILYVSGNS AEVFFVDYGN bmy_05906T0/1-918 LKLVPLPVHP HPDLVCLAPF ADFDKESYFR AQILYVSGNS AE-------- BACU006309/1-1292 LKLVPLPVHP HPDLVCLAPF ADFDKESYFR AQILYVSGNS AEVFFVDYGN 1001 1050 ENSP00000387303/1-1382 KSHVDLHLLM EIPCQFLELP FQALEFKICK MRPSAKSLVC GKHWSDGASQ ENSBTAP00000027199/1-1392 RARVALGVLM EMPCQFLELP FQALEFKICK MRPSARCLVC GERWSSGASQ ENSTTRP00000006061/1-906 RAHVALDVLM EIPCQFLELP FQALEFKICK MRPSARCRVC GEHWSGRASR bmy_05906T0/1-918 ---------- ---------- --ALEFKICK MRPSARCLVC GEHWSGRASR BACU006309/1-1292 RAHVALDVLM EIPSQFLELP FQALEFKICK MRPSARCLVC GEHWSGRASR 1051 1100 ENSP00000387303/1-1382 WFASLVSGCT LLVKVFSVVH SVLHVDVYQY SGVQDAINIR DVLIQQGYAE ENSBTAP00000027199/1-1392 RFSSLVGGRT LLVKVFSMVH SVLHVDAYLP SGLQDTVSVR GILISQGYAE ENSTTRP00000006061/1-906 RFSSLVSGRA LLVKVFSVVH GVLHVDAYLS SALQDAVNVR DVLVKEGYAE bmy_05906T0/1-918 RFSSLVSGRA LLVKVFSVVH GVLHVDAYVS SALQGAINVR DVLVKEGYAE BACU006309/1-1292 RFSSLVSGRA LLVKVFSVVH GVVHVDAYLS SALQGAINVR DVLVKEGYAE 1101 1150 ENSP00000387303/1-1382 LTEESYESKQ SHEVLKGLFS KSVENMTDGS VPFPMKDDEK YLIRILLESF ENSBTAP00000027199/1-1392 PAEEPYESKQ SHEALKGLFS KSVEDLTDMS TASPVKDDEK HLIRILLESF ENSTTRP00000006061/1-906 LAEEPYESK- ---------- ---------- ---------- ---------- bmy_05906T0/1-918 LAEEPYESKQ SHEVLKGLFS KSVEYVTDMS VPSPLKDDEK YLIRILLESF BACU006309/1-1292 LAEEPYESKQ SHEVLKGLFS KSVEYVTDMS VPSPLKDDEK YVIRILLESF 1151 1200 ENSP00000387303/1-1382 STNKLGTPNC KAELHGPFNP YELKCHSLTR ISKFRCVWIE KESINSVIIS ENSBTAP00000027199/1-1392 SSNKLGNPSC KAVLHGPFNP YELKCHSLTR ISKFRCVWIE KESINSVIIS ENSTTRP00000006061/1-906 ---------- ---------- ---------- ---------- ---------- bmy_05906T0/1-918 SSNKLGNPNC KAILHGPFNP YELKCHSLTR ISKFRCVWIE KESINSVIIS BACU006309/1-1292 SSNKLGNPNC KAILHGPFNP YELKCHSLTR ISKFRCVWIE KESINSVIIS 1201 1250 ENSP00000387303/1-1382 DAPEDLHQRM LVAASLSINA TGSTMLLRET SLMPHIPGLP ALLSMLFAPV ENSBTAP00000027199/1-1392 DSPEDTHQRL LVAASLSVNT TGSTMLLRET SLMPHIPGLP ALLSMLFAPV ENSTTRP00000006061/1-906 ---------- ---------- ---------- ---------- ---------- bmy_05906T0/1-918 DSPEDLHQRM LVAASLSVNA TGSTVLLRET SLMPHIPGLP ALLSMLFAPV BACU006309/1-1292 DSPEDFHQRM LVAASLSVNA TGSTVLLRET SLMPHVPGLP ALLSMLFAPV 1251 1300 ENSP00000387303/1-1382 IELRIDQNGK YYTGVLCGLG WNPATGASIL PEHDMELAFD VQFSVEDVVE ENSBTAP00000027199/1-1392 MELRVDQDGR CYTGVLCGLG CNPTTGAPVL PEHDMELAFD VQFSVEDIVE ENSTTRP00000006061/1-906 ---------- ---------- ---------- ---------- ---------- bmy_05906T0/1-918 MELRVDRDGR CYTGVLCGLG WNPTTGAPVL PEHDMELAFD VQFSVEDIIE BACU006309/1-1292 MELRVDRDGR CYTGVLCGLG WNPTTGAPVL PEHDMELAFD VQFSVEDVIE 1301 1350 ENSP00000387303/1-1382 VNILRAAINK LVCDGPNGCK CLGPERVAQL QDIARQKLLG LFCQSKPREK ENSBTAP00000027199/1-1392 INILRAAVNK LVCDGPNGSK CLGPERIAQL QDNSRQKLLG LFCQLKPREK ENSTTRP00000006061/1-906 INILRAAINK LVCDGPNGSM CLGPERITQL QDNARQKLLG LFCPLKPREK bmy_05906T0/1-918 INILRAAINK LVCDGPNGSM CLGPERITQL QDNARQKLLG LFCPLKPREK BACU006309/1-1292 INILRAAINK LACDGPNGSM CLGPERITQL QDNARQKLLG LFCPLKPREK 1351 1400 ENSP00000387303/1-1382 IVPKWHEKPY EWNQVDPKLV MEQADRESSR GKNTFLYQLH KLVVLGT ENSBTAP00000027199/1-1392 VVPKWYEKPY EWNQVDPKLV MEQADRESSR GKNTFLYQLH RLIVLSS ENSTTRP00000006061/1-906 IVPKWHEKPY EWNQVDLKLV MEQADREGSR GKNTFLYQLH KLIVLSS bmy_05906T0/1-918 IVPKWHEKPY EWNQVDLKLV MEQADREGSR GKNTFLYQLH KLIVLSS BACU006309/1-1292 IVPKWHEKPY EWNQVDLKLV MEQADGESSR GKNAFLYQLH KLIVLSS