KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:31:39 2014 Check: 00 .. Name: ENSBTAP00000027205/1-752 Len: 766 Check: 5549 Weight: 1.00 Name: ENSTTRP00000009417/1-749 Len: 766 Check: 2907 Weight: 1.00 Name: ENSP00000453293/1-749 Len: 766 Check: 2196 Weight: 1.00 Name: bmy_11612T0/1-391 Len: 766 Check: 2639 Weight: 1.00 Name: BACU001804/1-741 Len: 766 Check: 1592 Weight: 1.00 // 1 50 ENSBTAP00000027205/1-752 MSPTMAHRKR QSVASSLLDH RARPGP---- -EPESEDAEL ALEEYVPTDL ENSTTRP00000009417/1-749 ----MAHRKR PNTASSMLDH RARPGP---- -EPESEDAEL PLEEYVPKGL ENSP00000453293/1-749 ----MAHRKL ESVGSGMLDH RVRPGPVPHS QEPESEDMEL PLEGYVPEGL bmy_11612T0/1-391 ---------- ---------- ---------- ---------- ----MVPSTL BACU001804/1-741 ----MAHRKR QNAASSMLDH RARPGL---- -EPESEDVEL PLEEYVPKGL 51 100 ENSBTAP00000027205/1-752 ELAALRPESP VPAEQGGPDQ SPDGDSSSDY VNNTSEEEDY DEGLPEEEEG ENSTTRP00000009417/1-749 ELAALRPESP VPAEQGGHDH SPDGDSSSDY VNNTSEEEDY DEGLPEEEEG ENSP00000453293/1-749 ELAALRPESP APEEQECHNH SPDGDSSSDY VNNTSEEEDY DEGLPEEEEG bmy_11612T0/1-391 ---------- ---------- ---------- ---------- ---------- BACU001804/1-741 ELAALRPESP APAEQGGHDH SPDGDSSSDY VNNTSEEEDY DEGLPEEEEG 101 150 ENSBTAP00000027205/1-752 ITYYIRYCPE DDSYLQGTDC DGQGYLAHDT RHLETDECQE AVEEWTEPTG ENSTTRP00000009417/1-749 ITYYIRYCPE DDSYLQGMDC NGDGYLAHDA HHLETDECQE AVEEWTDPAG ENSP00000453293/1-749 ITYYIRYCPE DDSYLEGMDC NGEEYLAHSA HPVDTDECQE AVEEWTDSAG bmy_11612T0/1-391 ---------- ---------- -GE------- ---------- ----W----- BACU001804/1-741 ITYYIRYCPE DDSYLQGTDC NGDGYLAHDA RHLETDECQE AVEEWTDPAG 151 200 ENSBTAP00000027205/1-752 PHAHGHSDPG SPGYRDGHLS VPEDEASVLD SRDQEEDVHY CPSEEAYQDY ENSTTRP00000009417/1-749 PQPHGHGDQD SPGYRDGHLP TPEVEASMLE AQDQEEGVHY CPGEEAYQDY ENSP00000453293/1-749 PHPHGHEAEG SQDYPDGQLP IPEDEPSVLE AHDQEEDGHY CASKEGYQDY bmy_11612T0/1-391 ---------- ---------- ---------- ---------- ---------- BACU001804/1-741 PQPHGRGDQG SPGYRDGHLP TPELEASMLE AQDQEEGVHY CPGEGAYQDY 201 250 ENSBTAP00000027205/1-752 YPAEANGNAG STSPYRPRRR DGDPEDQEED IDQIVAEIKM SLSMSSITSG ENSTTRP00000009417/1-749 YPTEANGNEG SASPYRPRRG DGDLEDQEED IDQIVAEIKM SLSTSSIAGA ENSP00000453293/1-749 YPEEANGNTG -ASPYRLRRG DGDLEDQEED IDQIVAEIKM SLSMTSITSA bmy_11612T0/1-391 ---------- ---------- ---------- ---VVSETAV ---------- BACU001804/1-741 YPAEANGNEG SASPYRPRRG DRDLEDQEED IDQIVAEIKM SLSTSSITSA 251 300 ENSBTAP00000027205/1-752 GEASPEHAP- RGPEPGPGDS PEACPLAEAS RGPNRHEGRP KSLNLPPEAK ENSTTRP00000009417/1-749 GEASLEHAPL RAPEPGPGGP SEACPPAEAR RGPSRHEGRP KSLNLPPEAK ENSP00000453293/1-749 SEASPEH--- -GPEPGPEDS VEACPPIKAS CSPSRHEARP KSLNLLPEAK bmy_11612T0/1-391 ---------- --------GG LTTVPPS--- ---------- ---------- BACU001804/1-741 GEASPEHAPL RAPEPGPGDS SEAGPPAEAS RGPSRHEGRP KSLNLPPEAK 301 350 ENSBTAP00000027205/1-752 HPADPQRSFK TKTRTPEERP KWPQEEVCNG LEQPRKQQRS DLNGPVDNNN ENSTTRP00000009417/1-749 HPADPQRSFK TKTRTPEERP KWPQEQVCNG LEQPRKQQRS DLNGPVDNNN ENSP00000453293/1-749 HPGDPQRGFK PKTRTPEERL KWPHEQVCNG LEQPRKQQRS DLNGPVDNNN bmy_11612T0/1-391 ---------- ---------- ---------- ---------- ---------- BACU001804/1-741 HPTDPQRSFK TKARTPEERP KWPQEQVCNG LEQPRKQQRS DLNGPVDNNN 351 400 ENSBTAP00000027205/1-752 IPETKKVASF PSFVA----- ---VPGPCEP EDLIDGIIFA ANYLGSTQLL ENSTTRP00000009417/1-749 ILETKKVASF PSFVA----- ---VPGPCEP EDLIDGIIFA ANYLGSTQLL ENSP00000453293/1-749 IPETKKVASF PSFVA----- ---VPGPCEP EDLIDGIIFA ANYLGSTQLL bmy_11612T0/1-391 ---------- ---------- ---VPGPCEP EDLIDGIIFA ANYLGSTQLL BACU001804/1-741 ILETKKVASF PSFVAGLTTV PPSVPGPCEP EDLIDGIIFA ANYLGSTQLL 401 450 ENSBTAP00000027205/1-752 SERNPSKNIR MMQAQEAVSR VKRMQKAAKI KKKANSEGDA QTLTEVDLFI ENSTTRP00000009417/1-749 SERNPSKNIR MMQAQEAVSR VKRMQKAAKI KKKANSEGDA QTLTEVDLFI ENSP00000453293/1-749 SERNPSKNIR MMQAQEAVSR VKRMQKAAKI KKKANSEGDA QTLTEVDLFI bmy_11612T0/1-391 SERNPSKNIR MMQAQEAVSR VK-------- ----NSEGDA QTLTEVDLFI BACU001804/1-741 SERNPSKNIR MMQAQEAVSR VK-------- ----NSEGDA QTLTEVDLFI 451 500 ENSBTAP00000027205/1-752 STQRIKVLNA DTQETMMDHA LRTISYIADI GNIVVLMARR RMPRSASQDC ENSTTRP00000009417/1-749 STQRIKVLNA DTQETMMDHA LRTISYIADI GNIVVLMARR RMPRSASQDC ENSP00000453293/1-749 STQRIKVLNA DTQETMMDHA LRTISYIADI GNIVVLMARR RMPRSASQDC bmy_11612T0/1-391 STQRIKVLNA DTQETMMDHA LRTISYIADI GNIVVLMARR RMPRSASQDC BACU001804/1-741 STQRIKVLNA DTQETMMDHA LRTISYIADI GNIVVLMARR RMPRSASQDC 501 550 ENSBTAP00000027205/1-752 IETTPGAQEG KKQYKMICHV FESEDAQLIA QSIGQAFSVA YQEFLRANGI ENSTTRP00000009417/1-749 IETTPGAQEG KKQYKMICHV FESEDAQLIA QSIGQAFSVA YQEFLRANGI ENSP00000453293/1-749 IETTPGAQEG KKQYKMICHV FESEDAQLIA QSIGQAFSVA YQEFLRANGI bmy_11612T0/1-391 IETTPGAQEG KKQYKMICHV FESEDAQLIA QSIGQAFSVA YQEFLRANGI BACU001804/1-741 IETTPGAQEG KKQYKMICHV FESEDAQLIA QSIGQAFSVA YQEFLRANGI 551 600 ENSBTAP00000027205/1-752 NPEDLSQKEY SDIINTQEMY NDDLIHFSNS ENCKELQLEK HKGEILGVVV ENSTTRP00000009417/1-749 NPEDLSQKEY SDIINTQEMY NDDLIHFSNS ENCKELQLEK HKGEILGVVV ENSP00000453293/1-749 NPEDLSQKEY SDIINTQEMY NDDLIHFSNS ENCKELQLEK HKGEILGVVV bmy_11612T0/1-391 NPEDLSQKEY SDIINTQEMY NDDLIHFSNS ENCKELQLEK HKGEILGVVV BACU001804/1-741 NPEDLSQKEY SDIINTQEMY NDDLIHFSNS ENCKELQLEK HKGEILGVVV 601 650 ENSBTAP00000027205/1-752 VESGWGSILP TVILANMMNG GPAARSGKLS IGDQIMSING TSLVGLPLAT ENSTTRP00000009417/1-749 VESGWGSILP TVILANMMNG GPAARSGKLS IGDQIMSING TSLVGLPLAT ENSP00000453293/1-749 VESGWGSILP TVILANMMNG GPAARSGKLS IGDQIMSING TSLVGLPLAT bmy_11612T0/1-391 VESGWGSILP TVILANMMNG GPAARSGKLS IGDQIMSING TSLVGLPLAT BACU001804/1-741 VESGWGSILP TVILANMMNG GPAARSGKLS IGDQIMSING TSLVGLPLAT 651 700 ENSBTAP00000027205/1-752 CQGIIKGLKN QTQVKLNIVS CPPVTTVLIK RPDLKYQLGF SVQNGIICSL ENSTTRP00000009417/1-749 CQGIIKGLKN QTQVKLNIVS CPPVTTVLIK RPDLKYQLGF SVQNGIICSL ENSP00000453293/1-749 CQGIIKGLKN QTQVKLNIVS CPPVTTVLIK RPDLKYQLGF SVQNGIICSL bmy_11612T0/1-391 CQGIIKGLKN QTQVKLNIVS CPPVTTVLIK RPDLKYQLGF SVQNGIICSL BACU001804/1-741 CQGII---KN QTQVKLNIVS CPPVTTVLIK RPDLKYQLGF SVQNGIICSL 701 750 ENSBTAP00000027205/1-752 MRGGIAERGG VRVGHRIIEI NGQSVVATAH EKIVQALSNS VGEIHMKTMP ENSTTRP00000009417/1-749 MRGGIAERGG VRVGHRIIEI NGQSVVATAH EKIVQALSNS VGEIHMKTMP ENSP00000453293/1-749 MRGGIAERGG VRVGHRIIEI NGQSVVATAH EKIVQALSNS VGEIHMKTMP bmy_11612T0/1-391 MRGGIAERGG VRVGHRIIEI NGQSVVATAH EKIVQALSNS VGET-LGFSD BACU001804/1-741 MRGGIAERGG VRVGHRIIEI NGQSVVATAH EKIVQALSNS VGEV-RGHCP 751 800 ENSBTAP00000027205/1-752 AAMFRLLTGQ ETPLYI ENSTTRP00000009417/1-749 AAMFRLLTGQ ETPLYI ENSP00000453293/1-749 AAMFRLLTGQ ETPLYI bmy_11612T0/1-391 DP-------- ------ BACU001804/1-741 KPEPGSRSPD VSMADI