KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:31:40 2014 Check: 00 .. Name: ENSTTRP00000001555/1-1145 Len: 1168 Check: 3674 Weight: 1.00 Name: ENSP00000311135/1-1157 Len: 1168 Check: 8233 Weight: 1.00 Name: ENSBTAP00000027206/1-1155 Len: 1168 Check: 2899 Weight: 1.00 Name: bmy_18864T0/1-840 Len: 1168 Check: 9366 Weight: 1.00 Name: BACU013669/1-1093 Len: 1168 Check: 3842 Weight: 1.00 // 1 50 ENSTTRP00000001555/1-1145 MGKLRRRYNI KGRQQAAPGP SKGPPEPPPV RLELEDKGTL KGVDASNALV ENSP00000311135/1-1157 MGKLRRRYNI KGRQQAGPGP SKGPPEPPPV QLELEDKDTL KGVDASNALV ENSBTAP00000027206/1-1155 MGKLRRRYNI KGRQQTAPGT SKGPPEPPPV RLELEDKDTL KGVDASNALV bmy_18864T0/1-840 MGKLRRRYNI KGRQQAAPGP SKGPPEPPAV RLELEDKGTL KGVDASNALV BACU013669/1-1093 MGKLRRRYNI KGRQQAAPGP SKGPPEPPPV RLELEDKGTL KGVDASNALV 51 100 ENSTTRP00000001555/1-1145 LPGKKKKKTK APPLSKKEKK PLTKKERKML QRILDQKEKK LQRAEMLQKL ENSP00000311135/1-1157 LPGKKKKKTK APPLSKKEKK PLTKKEKKVL QKILEQKEKK SQRAEMLQKL ENSBTAP00000027206/1-1155 LPGKKKKKTK APPLSKKEKK PLTKKERKIL QRILDQKKKK SQRAEMLQKL bmy_18864T0/1-840 LPGKKKKKTK APPLSKKEKK PLTKKERKML QRILDQKEKK RQRAEMLQKL BACU013669/1-1093 LPGKKKKKTK APPLSKKEKK PLTKKERKML QRILDQKEKK RQRAEMLQKL 101 150 ENSTTRP00000001555/1-1145 SEVQVSEAEM RLFYTTSKLG TGDRMYRTKE KPDSVAAQGL EKVSSLSGAH ENSP00000311135/1-1157 SEVQASEAEM RLFYTTSKLG TGNRMYHTKE KADEVVAPGQ EKISSLSGAH ENSBTAP00000027206/1-1155 SEVQVSEAEM RLFYTTSKLG TGERMYHTNE KPDDVAAQGS EKISSLSGAH bmy_18864T0/1-840 SEVRVSEAEM RLFYTTSKLG TGGRMYRTKE KPDDVAAQGL EKISSLSGAH BACU013669/1-1093 SEVRVSEAEM RLFYTTSRLG TGGRMYRAKE KPDDVAAQGL EKISSLSGAH 151 200 ENSTTRP00000001555/1-1145 RKRHH----- -QEAEEEESE SSAESGPE-- ETPADEPAEA GAGSSPAHLP ENSP00000311135/1-1157 RKRRRWPSAE EEEEEEEESE SELEEESELD EDPAAEPAEA GVGTTVAPLP ENSBTAP00000027206/1-1155 RKRRR----- -QEA-EEESE SSVDSEPE-- EAPTDNRSEA SAGSAPAHVP bmy_18864T0/1-840 RKRHY----- -QEAEEEESE SSAESGPE-- EAPADEPAEG SVGSAPTHLP BACU013669/1-1093 RKRHY----- -QEAEEEESE SSAESGPE-- EAPADGPAEA G--------- 201 250 ENSTTRP00000001555/1-1145 PAPPGARGQS PVPSGL---- -PPPAPPAAA SALARPPAKP AVFVPVNRSP ENSP00000311135/1-1157 PAP--APSSQ PVPAGMTVPP PPAAAPP--- --LPRALAKP AVFIPVNRSP ENSBTAP00000027206/1-1155 PAPSGARGQN PVPSGPAETP APPAATPTAA SALVRPPSKP AVFIPVNRSP bmy_18864T0/1-840 PAPPGARGQS PVPSGLAETP APPSAPPAAA SALARPPAKP AVFIPVNRSP BACU013669/1-1093 ---------- ---------- ---------- ---------- ---------- 251 300 ENSTTRP00000001555/1-1145 EMQAERLKLP ILSEEQVIME AVAEHPVVIV CGETGSGKTT QVPQFLYEAG ENSP00000311135/1-1157 EMQEERLKLP ILSEEQVIME AVAEHPIVIV CGETGSGKTT QVPQFLYEAG ENSBTAP00000027206/1-1155 EMQEERLKLP ILSEEQVIME AVAEHPIVII CGETGSGKTT QVPQFLYEAG bmy_18864T0/1-840 EMQEERLKLP ILSEEQVIME AVAEHPVVIV CGETGSGKTT QVPQFLYEAG BACU013669/1-1093 ----RXXXXX XXXXXXXFME AVAEHPVVIV CGETGSGKTT QVPQFLYEAG 301 350 ENSTTRP00000001555/1-1145 YSSDNSIIGV TEPRRVAAMA MSQRVAKEMN LSPRVVSYQI RYEGNVTEET ENSP00000311135/1-1157 FSSEDSIIGV TEPRRVAAVA MSQRVAKEMN LSQRVVSYQI RYEGNVTEET ENSBTAP00000027206/1-1155 YSSDNSVIGV TEPRRVAAVA MSQRVAKEMN LSPRVVSYQI RYEGNVTEET bmy_18864T0/1-840 YSSDNSIIGV TEPRRVAAVA MSQRVAKEMN LSPRVVSYQI RYEGNVTEET BACU013669/1-1093 YSSDNCIIGV TEPRRVAAVA MSQRVAKEMN LSPRVVSYQI RYEGNVTEET 351 400 ENSTTRP00000001555/1-1145 RIKFMTDGVL LKEIQKDFLL LKYKVVVIDE AHERSVYTDI LIGLLSRIVC ENSP00000311135/1-1157 RIKFMTDGVL LKEIQKDFLL LRYKVVIIDE AHERSVYTDI LIGLLSRIVT ENSBTAP00000027206/1-1155 RIKFMTDGVL LKEIQKDFLL LKYKVVIIDE AHERSVYTDI LIGLLSRIVC bmy_18864T0/1-840 RIKFMTDGVL LKEIQKDFLL PKYKVVIIDE AHERSVYTDI LVGLLSRIAC BACU013669/1-1093 RIKFMTDGVL LKEIQKDFLL PKYKVVIIDE AHERSVYTDI LVGLLSRIAC 401 450 ENSTTRP00000001555/1-1145 LREKRHLPLK LLIMSATLRV EDFTQNQRLF AQPPPVIKVE SRQFPVTVHF ENSP00000311135/1-1157 LRAKRNLPLK LLIMSATLRV EDFTQNPRLF AKPPPVIKVE SRQFPVTVHF ENSBTAP00000027206/1-1155 LREKRHLPLK LLIMSATLRV EDFTQNQRLF TQPPPVIKVE SRQFPVTVHF bmy_18864T0/1-840 LRAK------ ---------- ---------- ---------- ---------- BACU013669/1-1093 LRAKRHLPLK LLIMSATLRV EDFTQNQRLF AQPPPVIKVE SRQFPVTVHF 451 500 ENSTTRP00000001555/1-1145 NKRTPLDDYS GECFRKVCKI HRMLPAXXXX XXXXXXXXXX XXXXXXXXAF ENSP00000311135/1-1157 NKRTPLEDYS GECFRKVCKI HRMLPAGGIL VFLTGQAEVH ALCRRLRKAF ENSBTAP00000027206/1-1155 NKRTPLEDYS GECFRKVCKI HRMLPAGGIL VFLTGQAEVH ALCRRLRRAF bmy_18864T0/1-840 ---------- ---------- ---------- ---------- ---------- BACU013669/1-1093 NKRTPLEDYS GECFRKVCKI HRMLPAGGIL VFLTGQAEVH ALCRRLRRAF 501 550 ENSTTRP00000001555/1-1145 PVARPRPPEK -DDQKDSVEE TRRFKKSQAR ARKAKATTLP QISLDNYSVL ENSP00000311135/1-1157 PPSRARPQEK DDDQKDSVEE MRKFKKSRAR AKKARAEVLP QINLDHYSVL ENSBTAP00000027206/1-1155 PLTRHRPPEK -DDQRDSVEE TRRFKKSRAR AKKAQAMTLP QISLDSYSVL bmy_18864T0/1-840 ---------- ---------- ---------- -------TLP QISLDNYSVL BACU013669/1-1093 PVARHRPPGK -DDQQDSVEE TRRFKKSQAR ARKAKATMLP QISLDNYSVL 551 600 ENSTTRP00000001555/1-1145 PAGGGDEDRE M--------D EESLGSDLDL DLGDDGTDGG EQPDASLPLR ENSP00000311135/1-1157 PAGEGDEDRE AEV----DEE EGALDSDLDL DLGDGGQDGG EQPDASLPLH ENSBTAP00000027206/1-1155 PAGEGDEDRE AEM---DDEE EEALGSDLDL DLGDHGADGG EQPDASLPLH bmy_18864T0/1-840 PTGEGDEDRE AEMDEEDEED EEALGSDLDL DLGXDGPDGG EQPDASPPLH BACU013669/1-1093 PAGEGDEDRD AEM---DEED EEALGSDLDL DLGDDGPDGG EQPGASLPLH 601 650 ENSTTRP00000001555/1-1145 VLPLYSLLAP EKQAQVFQPP PEGTRLCVVA TNVAETSLTI PGIKYVVDCG ENSP00000311135/1-1157 VLPLYSLLAP EKQAQVFKPP PEGTRLCVVA TNVAETSLTI PGIKYVVDCG ENSBTAP00000027206/1-1155 VLPLYSLLAP EKQAQVFQPP PEGTRLCVVA TNVAETSLTI PGIKYVVDCG bmy_18864T0/1-840 VLPLYSLLAP ERQAQVFQVP PEGTRLCVVA TNVAETSLTI PGIKYVVDCG BACU013669/1-1093 VLPLYSLLAP EEQAQVFQPP PEGTRLCVVA TNVAETSLTI PGIKYVVDCG 651 700 ENSTTRP00000001555/1-1145 KVKKRYYDRV TGVSSFRITW VSQASADQRA GRAGRTEPGH CYRLYSSAVF ENSP00000311135/1-1157 KVKKRYYDRV TGVSSFRVTW VSQASADQRA GRAGRTEPGH CYRLYSSAVF ENSBTAP00000027206/1-1155 KVKKRHYDRV TGVSSFRVTW VSQASADQRA GRAGRTEPGH CYRLYSSAVF bmy_18864T0/1-840 KVKTRHYDRV TGVSSFR--- ---------- ---------- ---------- BACU013669/1-1093 KVKTRHYDRV TGVSSFRVTW VSQASADQRA GRAGRTEPGH CYRLYSSAVF 701 750 ENSTTRP00000001555/1-1145 GDFEKFPPPE ITRRPVEDLT LQMKALTIEK XXXXXXXXXX XXXXXXXXXX ENSP00000311135/1-1157 GDFEQFPPPE ITRRPVEDLI LQMKALNVEK VINFPFPTPP SVEALLAAEE ENSBTAP00000027206/1-1155 GDFEKYPPPE ITRRPVEDLI LQMKALNIEK VINFPFPTPP SVEALIAAEE bmy_18864T0/1-840 ---------- ---------- ---------- VINFPFPTPP SVEALIAAEE BACU013669/1-1093 GDFEKFPPPE ITRRPVEDLT LQMKALNIEK VINFPFPTPP SVEALIAAEE 751 800 ENSTTRP00000001555/1-1145 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXGRTM-TFP VAPRYAKMLA ENSP00000311135/1-1157 LLIALGALQP PQKAERVKQL QENRLSCPIT ALGRTMATFP VAPRYAKMLA ENSBTAP00000027206/1-1155 LLIALGALQA PPKTERVKQL QRSRLSCPIT ELGRTMATFP VAPRYAKMLA bmy_18864T0/1-840 LLIALGALQA PPKTERVKQL QRSRWSCPIT ELGRTMATFP VAPRYAKMLA BACU013669/1-1093 LLIALGALQA PPKTERVKQL QRARGSCPIT ELGRTMATFP VAPRYAKMLA 801 850 ENSTTRP00000001555/1-1145 LSRQHDCLPY AITIVAAMTV RELFEELDRP AASDEELARL KGRRARVAQM ENSP00000311135/1-1157 LSRQHGCLPY AITIVASMTV RELFEELDRP AASDEELTRL KSKRARVAQM ENSBTAP00000027206/1-1155 LSRQHGCLPY TITIVAAMTV RELFEELDRP AASDEELARL KGKRARVAQM bmy_18864T0/1-840 LSRQHGCLPY AITIVAAMTV RELFEELDRP AASDEELARL KGKRARVAQM BACU013669/1-1093 LSRQHGCLPY AITIVAAMTV RELFEELDRP AASDEELARL KGKRARVAQM 851 900 ENSTTRP00000001555/1-1145 KRIWAGQGAS LKLGDLMVLL GAVGACEYAG CSPQFCEANG LRYRAMMEIR ENSP00000311135/1-1157 KRTWAGQGAS LKLGDLMVLL GAVGACEYAS CTPQFCEANG LRYKAMMEIR ENSBTAP00000027206/1-1155 KRIWAGQGAS LKLGDLMVLL GAVGACEYAG CSPQFCEANG LRYKAMMEIR bmy_18864T0/1-840 KRIWAGQGAS LKLGDLMVLL GAVGACEYAG CSPQFCEANG LRYRAMMEIR BACU013669/1-1093 KRIWAGQGAS LKLGDLMVLL GAVGACEYAG CSPQFCEANG LRYRAMMEIR 901 950 ENSTTRP00000001555/1-1145 RLRGQLTTAV NTMCPEAGLF VDPKMQPPSE SQVTYLRQIV TAGLGDHLAR ENSP00000311135/1-1157 RLRGQLTTAV NAVCPEAELF VDPKMQPPTE SQVTYLRQIV TAGLGDHLAR ENSBTAP00000027206/1-1155 RLRGQLTTAA NTMCPEAGLF VDPKMQPPNE DQVTYLRQIV TAGLGDHLAR bmy_18864T0/1-840 RLRGQLTAAV NAMCPEAGLF VDPKMQPPSE SQ-------- ---------- BACU013669/1-1093 RLRGQLTAAV NAMCPEAGLF VDPKMQPPSE SQVTYLRQIV TAGLGDHLAR 951 1000 ENSTTRP00000001555/1-1145 RVQSEDLLDD KWKNAYKXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000311135/1-1157 RVQSEEMLED KWRNAYKTPL LDDPVFIHPS SVLFKELPEF VVYQEIVETT ENSBTAP00000027206/1-1155 KVQSEDLVDD KWKNAYKTPL LDDPVFIHPS SVLFKELPEF VVYQEIVETT bmy_18864T0/1-840 ---------- -------TPL LDDPVFIHPS SVLFRELPEF VVYQEIVETT BACU013669/1-1093 RVQSEDLLDH KWKNAYKTPL LDDPVFIHPS SVLFRELPEF VVYQEIVETT 1001 1050 ENSTTRP00000001555/1-1145 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000311135/1-1157 KMYMKGVSSV EVQWIPALLP SYCQFDKPLE EPAPTYCPER GRVLCHRASV ENSBTAP00000027206/1-1155 KMYMKGVSTV DMQWIPVLLP SYCQFDKPLE EPPPAYCPEK GRMLCHRASV bmy_18864T0/1-840 KMYMKGVSTV EVQWIPVLLP SYCQFDKPLE EPPPTYCPEK GRMLCHRASV BACU013669/1-1093 KMYMKGISTV EVQWIPVLLP SYCQFDKPLE EPPPAYCPEK GRMLCHRASV 1051 1100 ENSTTRP00000001555/1-1145 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXVIHKLAS YKGCLLSSPS ENSP00000311135/1-1157 FYRVGWPLPA IEVDFPEGID RYKHFARFLL EGQVFRKLAS YRSCLLSSPG ENSBTAP00000027206/1-1155 FYRVGWPLPA VQVDFPEGLD CYKHFARVLL EGQVFPKLAS YKGCLLSSPS bmy_18864T0/1-840 F--------- ---------- ---------- ---------- ---------- BACU013669/1-1093 FCRVGWPLPA VQVDFPEGLD CYKHFARVLL EGQVFHKLAS YKGCLLSSPS 1101 1150 ENSTTRP00000001555/1-1145 TMLKTWTRLQ PRTESLLRAL VAEKADCRDA LLAAWRKNPK YLLAEYCEWI ENSP00000311135/1-1157 TMLKTWARLQ PRTESLLRAL VAEKADCHEA LLAAWKKNPK YLLAEYCEWL ENSBTAP00000027206/1-1155 TMLKTWARLQ PRTESLLRAL VAKKANCRDA LLVAWSKNPK YLLTEYLEWL bmy_18864T0/1-840 ---------- ---------- ---------- ---------- YLLAEYCEWF BACU013669/1-1093 TMLKTWARLQ PRTENLLRAL VAEKADCRDA LLAAWRKNPK YLLAEYCEWF 1151 1200 ENSTTRP00000001555/1-1145 PQAVHANVEK AWPPTADC ENSP00000311135/1-1157 PQAMHPDIEK AWPPTTVH ENSBTAP00000027206/1-1155 PQAVHADVEK AWPPTCDH bmy_18864T0/1-840 PQAVHANVEK AWPPTPDR BACU013669/1-1093 PQAMHANVEK AWPPTPDR