KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:31:41 2014 Check: 00 .. Name: ENSP00000346809/1-922 Len: 922 Check: 2366 Weight: 1.00 Name: ENSTTRP00000003200/1-922 Len: 922 Check: 958 Weight: 1.00 Name: ENSBTAP00000027208/1-922 Len: 922 Check: 1286 Weight: 1.00 Name: bmy_04446T0/1-660 Len: 922 Check: 9737 Weight: 1.00 Name: BACU014105/1-670 Len: 922 Check: 1201 Weight: 1.00 // 1 50 ENSP00000346809/1-922 MFLHSVNLWN LAFYVFMVFL ATLGLWDVFF GFEENKCSMS YMFEYPEYQK ENSTTRP00000003200/1-922 MFLHSVNLWN LAFYALMVFM ATLGLWDVFF GFEENKCSMS YMFEYPEYQK ENSBTAP00000027208/1-922 MLLHSVNLWN LAFYALMVFM ATLGLWDVFF GFEENKCSMS YMFEYPEYQK bmy_04446T0/1-660 ---------- ---------- ---------- ---------- ---------- BACU014105/1-670 MFLHSVNLWN LAFYALMVFM ATLGLWDVFF GFEENKCSMS YMFEYPEYQK 51 100 ENSP00000346809/1-922 IELPKKLAKR YPAYELYLYG EGSYAEEHKI LPLTGIPVLF LPGNAGSYKQ ENSTTRP00000003200/1-922 IELPKKLAKR YPAYELYLYG EGSYAEEHKV LPLTGIPVLF LPGNAGSYKQ ENSBTAP00000027208/1-922 IELPKKLAKR YPAYELYLYG EGSYAEEHKV LPLTGIPVLF LPGNAGSYKQ bmy_04446T0/1-660 ---------- ---------- ---------- ---------- ---------- BACU014105/1-670 IELPKKLAKR YPAYELYLYG EGSYAEEHKA LPLTGIPVLF LPGNAGSYKQ 101 150 ENSP00000346809/1-922 VRSIGSIALR KAEDIDFKYH FDFFSVNFNE ELVALYGGSL QKQTKFVHEC ENSTTRP00000003200/1-922 VRSIGSIALR KAEDIDFKYH FDFFSVNFNE ELVALYGGSL QKQTKFVHEC ENSBTAP00000027208/1-922 VRSIGSIALR KAEDIDFKYH FDFFSVNFNE ELVALYGGSL QKQTKFVHEC bmy_04446T0/1-660 ---------- ---------- ---------- ---------- ---------- BACU014105/1-670 VRSIGSIALR KAEDIDFKYH FDFFSVNFNE ELVALYGGSL QKQTKFVHEC 151 200 ENSP00000346809/1-922 IKTILKLYKG QEFAPKSVAI IGHSMGGLVA RALLTLKNFK HDLINLLITQ ENSTTRP00000003200/1-922 IKTILKLYKG QEFAPKSVAI IGHSMGGLVA RALLTLKNFK QDLINLLITQ ENSBTAP00000027208/1-922 IKTILKLYKG QEFAPKSVAI VGHSMGGLVA RALLTLKNFK QDLINLLVTQ bmy_04446T0/1-660 ---------- ---------- ----MGGLVA RALLTLKNFK QDLINLLITQ BACU014105/1-670 IKTILKLYKG QEFAPTSVAI IGHSMGGLVA RALLTLKNFK QDLINLLITQ 201 250 ENSP00000346809/1-922 ATPHVAPVMP LDRFITDFYT TVNNYWILNA RHINLTTLSV AGGFRDYQVR ENSTTRP00000003200/1-922 ATPHVAPVMP LDRFITDFYM TVNNYWILNA RHINLTTLSV AGGFRDYQVR ENSBTAP00000027208/1-922 ATPHVAPVMP LDRFITDFYM TVNNYWILNA RQINLTTLSV AGGFRDYQVR bmy_04446T0/1-660 ATPHVAPVMP LDRFITDFYM TVNNYWILNA RHINLTTLSV AGGFRDYQVR BACU014105/1-670 ATPHVAPVMP LDRFITDFYM TVNNYWILNA RHINLTTLSV AGGFRDYQVR 251 300 ENSP00000346809/1-922 SGLTFLPKLS HHTSALSVVS SAVPKTWVST DHLSIVWCKQ LQLTTVRAFF ENSTTRP00000003200/1-922 SGLTFLPKLS HHTSALSVVX XXXXXXXXXX XXXXXXXCKQ LQLTTIRAFF ENSBTAP00000027208/1-922 SGLTFLPKLS HHTSALSVVS SAVPKTWVST DHLSIVWCKQ LQLTTVRAFF bmy_04446T0/1-660 SGLTFLPKLS HHTSALSVVS SAVPKTWVST DHLSIVWCKQ LQLTTIRALF BACU014105/1-670 SGLTFLPKLS HHTSALSVVS SAVPKTWVST DHLSIVWCKQ LQLTTIRAFF 301 350 ENSP00000346809/1-922 DLIDADTKQI TQNSKKKLSV LYHHFIRHPS KHFEENPAII SDLTGTSMWV ENSTTRP00000003200/1-922 DLIDADTKQI TQNPKKKLSV LNHHFIRHPA KHFEENPSII SDLTGTSMWV ENSBTAP00000027208/1-922 DLIDADTKQI TQNPKKKLSV LNHHFIRHPA KHFEENPSII SDLTGTSMWV bmy_04446T0/1-660 DLIDADTKQI TQNPKKKLSV LNHHFIRHPA KHFEENPSII SDLTDKF--- BACU014105/1-670 DLIDADTKQ- ---------- ---------- ---------- ---------- 351 400 ENSP00000346809/1-922 LVKVSKWTYV AYNESEKIYF TFPLENHRKI YTHVYCQSTM LDTNSWIFAC ENSTTRP00000003200/1-922 PVKVSKWTYV AYNESDKIYF TFPLANHRKI YTHVYCQSTM LDTNSWIFGC ENSBTAP00000027208/1-922 PVKVSKWTYV AYNESDKIYF TFPLANHRKI YTHVYCQSTM LDTNSWIFGC bmy_04446T0/1-660 ------FETV MLQESDKIYF TFPLANHRKI YTHVYCQSTM LDTNSWIFGC BACU014105/1-670 ---------- ---ESDKIYF TFPLANHRKI YTHVYCQSTM L--------- 401 450 ENSP00000346809/1-922 INSTSMCLQG VDLSWKAELL PTIKYLTLRL QDYPSLSHLV VYVPSVRGSK ENSTTRP00000003200/1-922 INSTSMCRQG VDLSWKAELL PTIKSLTLRL QDYPSLSHLV VYVPSIHGSK ENSBTAP00000027208/1-922 INSTSMCRQG VDLSWKAELL PTIKSLTLRL QDYPSLSHLV VYVPSIHGSK bmy_04446T0/1-660 INSTSMCRQG VDLSWKAELL PTIKSLTLRL QDYPSLSHLV VYVPSIHGSK BACU014105/1-670 ---------- ---------- ----SLTLRL QDYPSLSHLV VYVPSIHG-- 451 500 ENSP00000346809/1-922 FVVDCEFFKK EKRYIQLPVT HLFSFGLSSR KVVLNTNGLY YNLELLNFGQ ENSTTRP00000003200/1-922 FVVDCEFFKK ETRSIQLPVT HLFSFGLSSR KVILNTSGLF YNIELLNFGQ ENSBTAP00000027208/1-922 FVVDCEFFKK ETRSIQLPVT HLFSFGLSSR KVILNTSGLF YNIELLNFGQ bmy_04446T0/1-660 FVVDCEFFKK ETRSIQLPVT HLFSFGLSSR KVILNTSGLF YNIELLNFGQ BACU014105/1-670 ---------- ---------- ---------- ---------- ---------- 501 550 ENSP00000346809/1-922 IYQAFKINVV SKCSAVKEEI TSIYRLHIPW SYEDSLTIAQ APSSTEISLK ENSTTRP00000003200/1-922 IYQAFKVNVV SKCSGVKEEI TSIYKLHIPW SYEDSLTIAQ VPSSTEISVK ENSBTAP00000027208/1-922 IYQAFKINVV SKCSGVKEEI TSIYKLHIPW SYEDSLTIAQ VPSSTEISVK bmy_04446T0/1-660 IYQAFKINVV SKCSGVKEEI TSIYKLHIPW SYEDSLTIAQ VPSATEISVK BACU014105/1-670 ---------- -------KEI TSIYKLHIPW SYEDSLTIAQ VPSATEISVK 551 600 ENSP00000346809/1-922 LHIAQPENNT HVALFKMYTS SDCRYEVTVK TSFSQILGQV VRFHGGALPA ENSTTRP00000003200/1-922 LHIAQPENDS HVALLKMYTS SDCQYEVTVK TSFSQILGQV VRFHGGALPA ENSBTAP00000027208/1-922 LHIAQPDNDS HVALLKMYTS SDCQYEVTVK TSFSQILGQV VRFHGGALPA bmy_04446T0/1-660 LHIAQPENDS HVALLKMYTS SDCQYE---- ---------V VRFHGGALPA BACU014105/1-670 LHIAQPENDS HVALLKMYTS SDCQYE---- ---------V VRFHGGALPA 601 650 ENSP00000346809/1-922 YVVSNILLAY RGQLYSLFST GCCLEYATML DKEAKPYKVD PFVIIIKFLL ENSTTRP00000003200/1-922 YVISSILLAY GGQLYSLFST GHCLEYAAML DKEAKPYKVD PFVIMVKFLL ENSBTAP00000027208/1-922 YVISSILLAY GGQLYSLFST GHCLEYATML DKEAKPYKVD PFVIMVKFLL bmy_04446T0/1-660 YVISSILLAY GGQLYSLFST GHCLEYATML DKEAKPYKVD PFVIMVKFLL BACU014105/1-670 YVISSILLAY GGQLYSLFST GHCLEYATML DKEAKPYKVD PFVIMVKFLL 651 700 ENSP00000346809/1-922 GYKWFKELWD VLLLPELDAV ILTCQSMCFP LISLILFLFG TCTAYWSGLL ENSTTRP00000003200/1-922 GYKWFKEFWD MLLLPELDAI VLTSQSMCFP LVSLILFLFG TCTAYWGGLL ENSBTAP00000027208/1-922 GYKWFKELWD MLLLPELDAI ILTSQSMCFP LVSLILFLFG TCTAYWGGLL bmy_04446T0/1-660 G--------- ---------- ---------- ---------- ---------- BACU014105/1-670 G--------- ---------- ---------- ---------- ---------- 701 750 ENSP00000346809/1-922 SSASVRLLSS LWLALKRPSE LPKDIKMISP DLPFLTIVLI IVSWTTCGAL ENSTTRP00000003200/1-922 SSTSVRLLSS LWLTLKRPSE LPKDMKIISP DLPILTVVLI IVSWTTCGAF ENSBTAP00000027208/1-922 SSTSVKLLSS LWLALKRPSE LPKDIKIISP DLPILTIIFI LISWTTCGAF bmy_04446T0/1-660 ---------- -------PSE LPKDIKIISP DLPILTVVLI IVSWTTCGAF BACU014105/1-670 ---------- -------PSE LPKDIKIISP DLPILTVVLI IVSWTTCGAF 751 800 ENSP00000346809/1-922 AILLSYLYYV FKVVHLQASL TTFKNSQPVN PKHSRRSEKK SNHHKDSSIH ENSTTRP00000003200/1-922 AILLTYLYYV FKIVHLQASL TTFKNSQTVN PKHSRRSEKK SNHHKDSTVY ENSBTAP00000027208/1-922 AILLTYLYYV FKIVHLQASL TMFKNSQTVN PKHSRRSEKK SNHHKDSAVH bmy_04446T0/1-660 AILLTYLYYV FKIVHLQASL TTFKNSQTVN PKHSRRSEKK SNHHKDSTGH BACU014105/1-670 AILLTYLYYV FK-------- ---------N PKHSRRSEKK SNHHKDSTVH 801 850 ENSP00000346809/1-922 HLRLSANDAE DSLRMHSTVI NLLTWIVLLS MPSLIYWLKN LRYYFKLNPD ENSTTRP00000003200/1-922 HLRLSASDAE DSLRMHSTVI NLLTWIVLLS MPSLIYWLKN LRYYFKLNPD ENSBTAP00000027208/1-922 HLRLSSSDAE DSLRMHSTLI NLLTWIVLLS MPSLIYWLKN LRYYFKLNPD bmy_04446T0/1-660 HLRLSASDAE DSLRMHSTVI NLLTWIVLLS MPSLIYWLKN LRYYFKLNPD BACU014105/1-670 HLRLSASDAE DSLRMHSTVI NLLTWIVLLS MPSLIYWLKN LRYYFKLNPD 851 900 ENSP00000346809/1-922 PCKPLAFILI PTMAILGNTY TVSIKSSKLL KTTSQFPLPL AVGVIAFGSA ENSTTRP00000003200/1-922 PCKPLAFILI PTMAVLGNTY TASIKSSKLL KTTSQFPLPL AVGVIAFGSA ENSBTAP00000027208/1-922 PCKPLAFILI PTMAILGNTY TTSIKSSKLL KTTSQFPLPL AVGVIAFGSS bmy_04446T0/1-660 PCKPLAFILI PTMAVLGNTY TASIKSSKLL KTTSQFPLPL AVGVIAFGSA BACU014105/1-670 PCKPLAFILI PTMAVLGNTY TASIKSSKLL KTTSQFPLPL AVGVIAFGSA 901 950 ENSP00000346809/1-922 HLYRLPCFVF IPLLLHALCN FM ENSTTRP00000003200/1-922 HLYRVPCFVF IPLLLHALCN FM ENSBTAP00000027208/1-922 HLYRVPCFVF IPLLLHALCN FM bmy_04446T0/1-660 HLYRVPCFVF IPLLLHALCN FM BACU014105/1-670 HLYRVPCFVF IPLLLHALCN FM