KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:31:54 2014 Check: 00 .. Name: ENSP00000297814/1-1401 Len: 1403 Check: 2982 Weight: 1.00 Name: ENSBTAP00000027236/1-1393 Len: 1403 Check: 5565 Weight: 1.00 Name: ENSTTRP00000015821/1-1397 Len: 1403 Check: 7786 Weight: 1.00 Name: bmy_17940T0/1-1262 Len: 1403 Check: 1080 Weight: 1.00 Name: BACU006685/1-1394 Len: 1403 Check: 8172 Weight: 1.00 // 1 50 ENSP00000297814/1-1401 MEEIPVKVAV RIRPLLCKEA LHNHQVCVRV IPNSQQVIIG RDRVFTFDFV ENSBTAP00000027236/1-1393 MEEIPVKVAI RIRPLLCKEV LHNHQACVRV IPNTQQIIIG RDRIFTFDFV ENSTTRP00000015821/1-1397 MEEIPVKVAV RIRPLLCKEV LHNYQACVRV IPNTQQVIIG RDRVFTFDFV bmy_17940T0/1-1262 MEEIPVKVAV RIRPLLCKEV LHNHQACVRV IPNTQQVIIG RDRVFTFDFV BACU006685/1-1394 MEEIPVKVAV RIRPLLCKEV LHNHQACVRV IPNTQQVIIG KDRVFTFDFV 51 100 ENSP00000297814/1-1401 FGKNSTQDEV YNTCIKPLVL SLIEGYNATV FAYGQTGSGK TYTIGGGHIA ENSBTAP00000027236/1-1393 FGKNSTQDEV YNTCIKPLVL SLIEGYNATV FAYGQTGSGK TYTIGGGHVA ENSTTRP00000015821/1-1397 FGKNSTQDEV YNTCIKPLVL SLIEGYNATV FAYGQTGSGK TYTIGGGHVA bmy_17940T0/1-1262 FGKNSTQDEV YNTCIKPLVL SLIEGYNATV FAYGQTGSGK TYTIGGGHVA BACU006685/1-1394 FGKNSTQDEV YNTCIKPLVL SLIEGYNATV FAYGQTGSGK TYTIGGGHVA 101 150 ENSP00000297814/1-1401 SVVEGQKGII PRAIQEIFQS ISEHPSIDFN VKVSYIEVYK EDLRDLLELE ENSBTAP00000027236/1-1393 SVVEGQKGII PRAIQEIFQN ISGKPSIDFN IKVSYIEVYK EDLRDLLELE ENSTTRP00000015821/1-1397 SVVEGQKGII PRAIQEIFQN ISENLSIDSR IKVSYIEVYK EDLRDLLELE bmy_17940T0/1-1262 SVVEGQKGII PRAIQEIFQN ISENISIDSK IKVTYIEVYK EDLRDLLELE BACU006685/1-1394 SVVEGQKGII PRAIQEIFQN ISENLSIDSK IKVSYIEVYK EDLRDLLELE 151 200 ENSP00000297814/1-1401 TSMKDLHIRE DEKGNTVIVG AKECHVESAG EVMSLLEMGN AARHTGTTQM ENSBTAP00000027236/1-1393 TSVKDLHIRE DEKGNTVIVG AKECQVESAD EVMSLLEMGN AARHTGTTQM ENSTTRP00000015821/1-1397 TSMKDLHIRE DEKGNTVIVG AKECQVETAD EVMSLLEMGN AARHTDTTQM bmy_17940T0/1-1262 TSMKDLHIRE DEKGNTVIVG AKECQVESAD EVMSLLEMGN AARHTGTTQM BACU006685/1-1394 TSMKDLHIRE DEKGNTVIVG AKECQVESAD EVMSLLEMGN AARHTGTTQM 201 250 ENSP00000297814/1-1401 NEHSSRSHAI FTISICQVHK NMEAAEDGSW YSPRHIVSKF HFVDLAGSER ENSBTAP00000027236/1-1393 NEHSSRSHAI FTISLCQVDK NRKTAEDGSW HSHRHIVSKF HFVDLAGSER ENSTTRP00000015821/1-1397 NEHSSRSHAI FTISLRQVAK NKEAAEDGSW YSHQHIVSKF HFVDLAGSER bmy_17940T0/1-1262 NEHSSRSHAI FTINLRQVTK NKEAAEDGSW YSHQHIVSKF HFVDLAGSER BACU006685/1-1394 NEHSSRSHAI FTISLRQVAK NKETAEDGSW YSHQHIVSKF HFVDLAGSER 251 300 ENSP00000297814/1-1401 VTKTGNTGER FKESIQINSG LLALGNVISA LGDPRRKSSH IPYRDAKITR ENSBTAP00000027236/1-1393 VTKTGNTGER FKESIQINSG LLALGNVISA LGDPRKKSSH IPYRDAKITR ENSTTRP00000015821/1-1397 VTKTGNTGER FKESIQINSG LLALGNVISA LGDPRRKSSH IPYRDAKITR bmy_17940T0/1-1262 VTKTGNTGER FKESIQINSG LLALGNVISA LGDPRRKSSH IPYRDAKITR BACU006685/1-1394 VTKTGNTGER FKESIQINSG LLALGNVISA LGDPRRKSSH IPYRDAKITR 301 350 ENSP00000297814/1-1401 LLKDSLGGSA KTVMITCVSP SSSNFDESLN SLKYANRARN IRNKPTVNFS ENSBTAP00000027236/1-1393 LLKDSLGGSA KTVMITCVSP SSSDFDESLN SLKYANRARN IRNKPTLNFS ENSTTRP00000015821/1-1397 LLKDSLGGSA KTVMITCVSP SSLDFDESLN SLKYANRARN IRNKPTLNFS bmy_17940T0/1-1262 LLKDSLGGSA KTVMITCVSP SSSDFDESLN SLKYANRARN IRNKPTLNFS BACU006685/1-1394 LLKDSLGGSA KTVMITCVSP SSSDFDESLN SLKYANRAHN IRNKPTLNFS 351 400 ENSP00000297814/1-1401 PESDRIDEME FEIKLLREAL QSQQAGVSQT TQINREGSPD TNRIHSLEEQ ENSBTAP00000027236/1-1393 PESDRMDEME FEIKLLREAL QSQQASSSQT SQIHQEGTPD KNKIHSLEEQ ENSTTRP00000015821/1-1397 PESDRMGEME FEIKLLREAL QSQQASSNQT SQIHREGTPD KNRIHSLEEQ bmy_17940T0/1-1262 PESDRMGEME FEIKLLREAL QSQQASSSQT SQIHREGTPD KNRIHSLEEQ BACU006685/1-1394 PESDRMGEME FEIKLLREAL QSQQASSSQT SQIHREGTPD KNRIHSLEEQ 401 450 ENSP00000297814/1-1401 VAQLQGECLG YQCCVEEAFT FLVDLKDTVR LNEKQQHKLQ EWFNMIQEVR ENSBTAP00000027236/1-1393 VTQLQGECLG YQNCLEEAFT FLVDLKDSVR LNEKQQHKLQ EWFNMTQEV- ENSTTRP00000015821/1-1397 VAQLQGECLG YQNCLEEAFT FLVDLKDSVR LNQNQQHKLQ EWFNVTQEV- bmy_17940T0/1-1262 VAQLQGECLG YQNCLEEAFT FLVDLKDSVR LNQNQQHKLQ EWFNVTQEV- BACU006685/1-1394 VAQLQGECLG YQNCLEEAFT FLVDLKDSVR LNQNQQHKLQ EWFNVTQEV- 451 500 ENSP00000297814/1-1401 KAVLTSFRGI GGTASLEEGP QHVTVLQLKR ELKKCQ-CVL AADEVVFNQK ENSBTAP00000027236/1-1393 ----TLFRGH RGIGNLEEGP QHITVLQLKR ELKKCQ-CAL AADEVVFNQK ENSTTRP00000015821/1-1397 ----TSFRGD QGIGNLVXXX XXXXXXXXXX XXXXXXXCAL AAAEVVFNQK bmy_17940T0/1-1262 ----TSFRGH QGIGNLEEGP QHITVLQLKR ELKKCQ-CAL AADEVVFNQK BACU006685/1-1394 ----TSFRGH QGIGNLEEGP QHITVLQLKR ELKKCQ-CAL AADEVVFNQK 501 550 ENSP00000297814/1-1401 ELEVKELKNQ VQMMVQENKG HAVSLKEAQK VNRLQNEKII EQQLLVDQLS ENSBTAP00000027236/1-1393 DLEVKELKNQ VQMMVQENKG HVVSLKEAQK VNRLQNEKII EQQLLVDQLS ENSTTRP00000015821/1-1397 DLEVKELKNQ MQMMMQENKG HVISLKEAQK VNRLQNEKII EQQLLVDQLS bmy_17940T0/1-1262 DLKVKELKNQ MQMMMQENKG HVISLKEAQK VNRLQNEKII EQQLLVDQLS BACU006685/1-1394 DLEVKELKNQ MQMMMQENKG HVISLKEAQK VNRLQNEKII EQQLLVDQLS 551 600 ENSP00000297814/1-1401 EELTKLNLSV TSSAKENCGD GPDARIPERR PYTVPFDTHL GHYIYIPSRQ ENSBTAP00000027236/1-1393 EELTKLNLSM TSSVKETCGD GPDTRILEKR PYTVPFDTRL GHYIYGPARL ENSTTRP00000015821/1-1397 EELTKLNLSM TSSVKETCGN GPDARIPEKR PYTVPFDTRL EHYIYIPARS bmy_17940T0/1-1262 EELTKLNLSM TSSVKETCGD GPDARIPEKR PYTVPFDTRL GHYIYIPARS BACU006685/1-1394 EELTKLNPSV TSSVKETCGD GPDARIPEKR PYTVPFDTRL GHYIYIPARS 601 650 ENSP00000297814/1-1401 DSRKVHTSPP MYSLDRIFAG FRTRSQMLLG HIEEQDKVLH CQFSDNSDDE ENSBTAP00000027236/1-1393 DSRKVHTSPS VYSLDRLVAG FRTRSQMLLG RLEEQDEVLQ CQFSDNSDDE ENSTTRP00000015821/1-1397 DSRKVYTSPP VYSLDRLVAG FRTRSQMLLG HLEEQDEVLH CQFSDNSDDE bmy_17940T0/1-1262 DSRKVYTSPS VYSLDRLVAG FRTRSQMLLG HLEEQDEVLH CQFSDNSDDE BACU006685/1-1394 DSRKVYTSPS VYSLDRLVAG FRTRSQMLLG HLEEQDEVLH CQFSDNSDDE 651 700 ENSP00000297814/1-1401 ESEGQEKSGT RCRSRSWIQK PDSVCSLVEL SDTQDETQKS DLEN-EDLKI ENSBTAP00000027236/1-1393 ESEGQEKSEI RHRSCSWIQK PGSVCSLVEL NDIQDQTQKS GLENEEDLKI ENSTTRP00000015821/1-1397 ESEGQEKSEI RHKGCSWIQK LGSVCSFVEL NDIQNQTQKS RLEN-EDLKI bmy_17940T0/1-1262 ESEDQEKSEI RRKGCSWIQK PGSVCSLVEL NDIQDQTQKS RLEN-EDLKI BACU006685/1-1394 ESEGQEKSEI RHKGCSWIQK PGSVCSLVEL NDIQDQTQKS RLEN-EDLKI 701 750 ENSP00000297814/1-1401 DCLQESQELN LQKLKNSERI LTEAKQKMRE LTINIKMKED LIKELIKTGN ENSBTAP00000027236/1-1393 ECLQESQELN LQKLRNSELI LTEAKQKMRE LTINIKMKED LIKELIKTGN ENSTTRP00000015821/1-1397 ECLQESQGLN LQKLRNSDLI LTEAKQKMRE LTINIKVKED LIKELIKTGN bmy_17940T0/1-1262 ECLQESQELN LQKLRNSELI LTEAKQKMRE LTINIKMKED LIKELIKTGN BACU006685/1-1394 ECLQESQELN LQKLRNSELI LTEAKQKMRE LTINIKMKED LIKELIKTGN 751 800 ENSP00000297814/1-1401 DAKSVSKQYS LKVTKLEHDA EQAKVELIET QKQLQELENK DLSDVAMKVK ENSBTAP00000027236/1-1393 DAKSVSKQYS LKVTKLEHEA EQAKVELTET EKQLQELENK DLSDVALKVK ENSTTRP00000015821/1-1397 DVKSVSKQYS LKVTKLEQEA EQAKVELTET QKQLEELENK DLSDVALKVK bmy_17940T0/1-1262 DVKSVSKQYS LKVTKLEHEA EQAKVELTET QKQLEELENK DLSDVALKVK BACU006685/1-1394 DVKSVSKQYS LKVTKLEHEA EQAKVELTET QKQLEELENK DLSDVALKVK 801 850 ENSP00000297814/1-1401 LQKEFRKKMD AAKLRVQVLQ KKQQDSKKLA SLSIQNEKRA NELEQSVDHM ENSBTAP00000027236/1-1393 LQKEFRRKMD AAKLRVQVLQ KKHQNSKKLA SLSIQNEKRA NELEQNVDHM ENSTTRP00000015821/1-1397 LQKEFRKKMD AAKLRVQVLQ KKQQNSKKLA SLSIQNEKRA NELEQNVDHM bmy_17940T0/1-1262 LQKEFRKKMD AAKLRVQVLQ KKQQNSKKLA SLSIQNEKRA NELEQNVDHM BACU006685/1-1394 LQKEFRKKMD AAKLRVQVLQ KKQQNSKKLA SLSIQNEKRA NELEQNVDHM 851 900 ENSP00000297814/1-1401 KYQKIQLQRK LREENEKRKQ LDAVIKRDQQ KIKEIQLKTG QEEGLKPKAE ENSBTAP00000027236/1-1393 KYQKVQLQKR LREENEKRKQ LDAEIKRDQQ KIKELQLKTE QKD-LKLKAE ENSTTRP00000015821/1-1397 KHQKVQLQKR LQEENEKRKQ LDAEIKRGQQ KIKELQLKTE QGEGLKLKAE bmy_17940T0/1-1262 KHQKVQLQKR LQEENEKRKQ LDAEIKRDQR KIKELQLKTE QEEGLKLKAE BACU006685/1-1394 KHQKVQLQKR LQEENEKRKQ LDAEIKRDQQ EIKELQLKTE QEEGLKLKAE 901 950 ENSP00000297814/1-1401 DLDACNLKRR KGSFGSIDHL QKLDEQKKWL DEEVEKVLNQ RQELEELEAD ENSBTAP00000027236/1-1393 DLDAFKMKRR KGSFGSIDQL QKLDKQKKWL DEEVEKVLNQ RQELEELEED ENSTTRP00000015821/1-1397 DLDAFKMKRR KGSFGSIDQL QKLDEQKKWL DEEVEKVLNQ RQELEELEED bmy_17940T0/1-1262 DLDAFKMKRR KGSFGSIDQL QKLDEQKKWL DEEVEKVLNQ RQELEELEED BACU006685/1-1394 DLDAFKMKRR KGSFGSIDQL QKLDEQKKWL DEEVEKVLNQ RQELEELEED 951 1000 ENSP00000297814/1-1401 LKKREAIVSK KEALLQEKSH LENKKLRSSQ ALNTDSLKIS TRLNLLEQEL ENSBTAP00000027236/1-1393 LKKREAIVSK KEALLQEKSH LESKKLRSSQ ALNTDSLKIS TRLSLLDQEL ENSTTRP00000015821/1-1397 LQKREAIVCR KEALLQEKSH LENKKLRSSQ ALNTDSLKIS TRLSLLDQEL bmy_17940T0/1-1262 LKKREAIVCK KEALLQEKSH LENKKLRSSQ ALNTDSLKIS TRLSLLDQEL BACU006685/1-1394 LKKREAIVCK KEALLQEKSH LENKKLRSSQ ALNTDSLKIS TRLILLDQEL 1001 1050 ENSP00000297814/1-1401 SEKNVQLQTS TAEEKTKISE QVEVLQKEKD QLQKRRHNVD EKLKNGRVLS ENSBTAP00000027236/1-1393 SEKNVQLQSS TAEEKIKISE QVQALQREKD QLQRQRNSVD EKLKNGSVLS ENSTTRP00000015821/1-1397 SEKNVQLQNS TAEEKIKISE QVQALQKEKD QLQRRRNSVD EKLKNGSVLS bmy_17940T0/1-1262 SEKNVQLQSS TAEEKIKISE QVQALQKEKD QLQRRRNSVD EKLKNGSVLS BACU006685/1-1394 SEKNVQLQSS TAEEKIKISE QVQALQKEKD QLQRRRNSVD EKLKNGSVLS 1051 1100 ENSP00000297814/1-1401 PEEEHVLFQL EEGIEALEAA IEYRNESIQN RQKSLRASFH NLSRGEANVL ENSBTAP00000027236/1-1393 PEEEHVLFQL EEGIEALEAA IEYKNESIQS RQNLLRASFQ NLSHSEANVL ENSTTRP00000015821/1-1397 PEEEHVLFQL EEGIEALEAA IEYKNEHIQS RQNSLRASLQ NLSHSEENVL bmy_17940T0/1-1262 PEEEHVLFQL EEGIEALEAA IEYKNERIQS RQNSLRASFQ NLSHSEANVL BACU006685/1-1394 PEEEHVLFQL EEGIEALEAA IEYKNERIQS RQNSLRASFQ NLSHSEANVL 1101 1150 ENSP00000297814/1-1401 EKLACLSPVE IRTILFRYFN KVVNLREAER KQQLYNEEMK MKVLERDNMV ENSBTAP00000027236/1-1393 EKLICLSPVE IRAVLFRYFN KVVNLREVER KLKLQNEEIK MKVLERDNMV ENSTTRP00000015821/1-1397 EKLICLSPVE IRAILFRYFN KVVNLREAER KLQLQNEEIK MKVLERDNVV bmy_17940T0/1-1262 EKLICLSPVE IRAILFRYFN KVVNLREAER KLQLQNEEIK MKVLERDNVV BACU006685/1-1394 EKLICLSPVE IRAILFRYFN KVVNLREAER KLQLQNEEIK MKVLERDNVV 1151 1200 ENSP00000297814/1-1401 RELESALDHL KLQCDRRLTL QQKEHEQKMQ LLLHHFKEQD GEGIMETFKT ENSBTAP00000027236/1-1393 RELESALEHL KFQCDRRLIL QQKEHEQKMQ LLLHHFKERD GEGIVETLKN ENSTTRP00000015821/1-1397 RELESTLEHL KLQCDRRLTL QQKEHEQKMQ LLLHHFKEQD GEGTVETLKN bmy_17940T0/1-1262 RELESTLEHL KLQCDRRLTL QQKEHEQKMQ LLLHHFKEQD GEGIVETLKN BACU006685/1-1394 RELESTLEHL KLQCDRRLTL QQKEHEQKMQ LLLHHFKEQD GEGIVETLKN 1201 1250 ENSP00000297814/1-1401 YEDKIQQLEK DLYFYKKTSR DHKKKLKELV GEAIRRQLAP SEYQEAGDGV ENSBTAP00000027236/1-1393 YEDKIHQLER DLYFYKKTSR DLKKKLKELV GEAIRRQLLP SENHDAGDGV ENSTTRP00000015821/1-1397 YGDKIQQLER ELYFYKKTSR DLKKKLKELV GEAIRRQLVP SENHDAGNGV bmy_17940T0/1-1262 YGDKIQQLER ELYFYKKTSR DLKKKLKELV GEAIRRQLVP SESKRFSVTC BACU006685/1-1394 YGDKIQQLER ELYFYKKTSR DLKKKLKELV GEAIRRQLVP SENHDAGNGV 1251 1300 ENSP00000297814/1-1401 LKPEGGGMLS EELKWASRPE SMKLSGRERE MDSSASSLRT QPNPQKLWED ENSBTAP00000027236/1-1393 QNPEKAGMVS EELKWASRTE SMKLSGRERP LDSSTSSLRT QPNPQKLWED ENSTTRP00000015821/1-1397 QNPEEAGMVS EELKRASRTE SIKLSGRERQ LDSSASSSRT QPNPQKLWEE bmy_17940T0/1-1262 HSNTVAWFVV E--------- ---------- ---------- -PFPID-W-- BACU006685/1-1394 QNPEEAGMVS EEFKWASRTE SIKLSGRERQ LDSSTSSLRT QPNPQL-WE- 1301 1350 ENSP00000297814/1-1401 IPELPPIHSS LAPPSGHMLG NENKTETDDN QFTKSHSRLS SQIQVVGNVG ENSBTAP00000027236/1-1393 GPELAPMYSS VAPTSGHLLS NEDKTEIDEN QFTKSNSRPS SHIQPVGNVG ENSTTRP00000015821/1-1397 GAELPPIYSS LAPTSGHLLS NEAKTERDGN QFTKSHSRPT PQIQPVGNVA bmy_17940T0/1-1262 ---------- -------II- ---------- ---------- ---------- BACU006685/1-1394 GPELPPIYSS LAPTSGHLLS NEDKTERNDN QFTNSHSRPT PQIQPVGNVA 1351 1400 ENSP00000297814/1-1401 RLHGVTPVKL CRKELRQISA LELSLRRSSL GVGIGSMAAD SIEVSRKPRD ENSBTAP00000027236/1-1393 QLHGVTPVKL CRKELRQISA LELSLRRSNL GVAVGSMTAD SLEDKEGEEG ENSTTRP00000015821/1-1397 QLHSVTRVKL CRKELRQISA LELLLRSSSL GVGVGSMTAD SIEVARKMSD bmy_17940T0/1-1262 ---------- ---------- ---------- ---------- ---------- BACU006685/1-1394 QLHSVTPVKL CRKELHQISA LELSLRSSSL GVGIGSMTAD SIEVARKTSD 1401 1450 ENSP00000297814/1-1401 LKT ENSBTAP00000027236/1-1393 --- ENSTTRP00000015821/1-1397 LKT bmy_17940T0/1-1262 --- BACU006685/1-1394 LKT