KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:31:55 2014 Check: 00 .. Name: ENSBTAP00000027241/1-703 Len: 722 Check: 2958 Weight: 1.00 Name: ENSTTRP00000002820/1-697 Len: 722 Check: 2338 Weight: 1.00 Name: bmy_13994T0/1-689 Len: 722 Check: 6406 Weight: 1.00 Name: BACU012110/1-684 Len: 722 Check: 1664 Weight: 1.00 // 1 50 ENSBTAP00000027241/1-703 MDFLRLARLL SSPCPVGLSI VRHLDPLRAR WAGGRA---- ---AGWVSPA ENSTTRP00000002820/1-697 MDLVRLSRLF YGPCPMGLAI LHHLDPFRAR WAGGRE---- ----GLIRLA bmy_13994T0/1-689 MDLVRLSRLF SGPRPMGLAI LQHLDPLRAR WAGGREGPMW PRGAGLIRLV BACU012110/1-684 ---------- ---------- ---------M WP--RS---- ---AGLIRLV 51 100 ENSBTAP00000027241/1-703 PAAFSSSLSQ LPLGSQSQKN TGSLSPDPGQ PSPTATQEEG EEESFGTLSD ENSTTRP00000002820/1-697 PAAFNSSLSR LSLGPRSQKN TGSLSSDPGQ PSPTATQEEG EEESFGTLSD bmy_13994T0/1-689 PAAFSSSLSR LPLGPRSQKN TGSLSSDPGQ PSPTATQEEG EEESFGTLSD BACU012110/1-684 PAAFSSSLSR LPLGPRSQKN TGSLSSDPGQ PSPTATQEEG EEESFGTLSD 101 150 ENSBTAP00000027241/1-703 KYSSRRMFHK STAQLYNLRL KEQNTEEDEE GELEPKPWRG PRNTPYWYFF ENSTTRP00000002820/1-697 KYSSRRMFHK STAQLYNLRL KEQSGEEDEE GGLQPESRQG PRNTPCWYFF bmy_13994T0/1-689 KYSSRRMFHK STAQLYNLRL KEQSVEEDEE GELQPKSWQG PRNTPYWYFF BACU012110/1-684 KYSSRRMFHK STAQLYNLRL KEQSVEEDEE GELQPKAWQG PRNTPYWYFF 151 200 ENSBTAP00000027241/1-703 QCKRLIREGK LAEALDLFER QMLKEERLQP LECNYTVLIG GCGRAGYLKK ENSTTRP00000002820/1-697 QCKRLIKEGK LAEALDLFER QMLKEERLQP LECNYTVLIG GCGRAGYLRK bmy_13994T0/1-689 QCKRLIKEGK LAEALDLFER QMLKEERLQP LECNYT---- ---------- BACU012110/1-684 QCKRLIKEGK LAEALDLFER QMLKEERLQP LECNYTVLIG GCGRAGYLRK 201 250 ENSBTAP00000027241/1-703 AFRLYNDMKK RDLEPSDATY TALFNVCAES PWKDSALQSA LKLRQQLQAR ENSTTRP00000002820/1-697 AFQLYNDMKK RDLEPSDATY TALFNVCAES PWKDSALQSA LKLRQQLQAR bmy_13994T0/1-689 -------MKK RDLEPSDATY TALFNVCAES PWKDSALQSA LKLRQQLQAR BACU012110/1-684 AFQLYNDMKK RDLEPSDATY TALFNVCAES PWKDSALQSA LKLRQQLQAR 251 300 ENSBTAP00000027241/1-703 NFQLNLKTYH ALLKMAALCA DLRMCLDVFK EIIQKGHVVT EETFSYLLMG ENSTTRP00000002820/1-697 NFQLNLKTYH SLLKMAAMCA DLRMCLDVFK EIIQKGHAVT EETFSYLLMG bmy_13994T0/1-689 NFQLNLKTYH SLLKMAAMCA DLRMCLDVFK EIIQKGHAVT EETFSYLLMG BACU012110/1-684 NFQLNLKTYH SLLKMAAMCA DLRMCLDVFK EIIQKGHAVT EETFSYLLMG 301 350 ENSBTAP00000027241/1-703 CIQDKKTGFR YALQ------ -----VWRQM LSLG-LQPSR HGYNLLLAAA ENSTTRP00000002820/1-697 CMQDKKTGFR YAMQ------ -----VWRQM LSLG-LQPSR HGYNLLLGAA bmy_13994T0/1-689 CIQDKKTGFR HALQ------ -----VWRQM LSLG-LRPSR HGYNLLLGAA BACU012110/1-684 CIQDKKTGFR YALQGSREKG LGEPERWKCD TVWGRPRPSR HGYNLLLGAA 351 400 ENSBTAP00000027241/1-703 RDCGLGDPVV ASAVLLRPRE ETALLQPPAR GRRTRRRAQV GADCSLSAKL ENSTTRP00000002820/1-697 RDCGLGDPEV ASAVLLRPRE EMVLLQPPAG GRQARRRDGV GADDSLSARL bmy_13994T0/1-689 RDCGLGDPAV ASAVLLRPRE EMVLLQPPAG GRQARRRDGV GADDRLSAWL BACU012110/1-684 RDCGLGDPAV ASAVLLRPRE EMVLLQPPAG GRQARRRDGV GADDRLSAWL 401 450 ENSBTAP00000027241/1-703 HVEALERQLF LEPSQALEGP QEPEEARAPK QAQSGMETKA EPDHPVALTS ENSTTRP00000002820/1-697 HVEALERQ-F LEPFQALEGR MEPQEPGARG KAQQREETKV E-QHDVAPAK bmy_13994T0/1-689 HVEALERQLF LEPSQALEGP LEPQEAGAPG KAQPGVETKA EPDRAVALPS BACU012110/1-684 HVEALERQLF LEPSQALEGP LEPQEAGAPG KAQPGVETKA EADRAVALPS 451 500 ENSBTAP00000027241/1-703 VAPEPPPWGL EANLLTPGAA PLAVVSFGTV STPADRLALM GGLEGFLGKM ENSTTRP00000002820/1-697 LSP---PRGK ETNLLTAGAV SSAVVSFGTV TTPADRLALM GGLEGFLGKM bmy_13994T0/1-689 AAPEPPPWGL EANLLTPGAV PSAVVSFGTV TTPADRLALM GGLEGFLGKM BACU012110/1-684 AAPEPPPWGL EANLLTPGAV PSAVVSFGTV TTPADRLALM GGLEGFLGKM 501 550 ENSBTAP00000027241/1-703 AEHGLRPDIK TLTLLAEVVE PGSPAESSLL SVLDAHGVEP DLTFFNTLMK ENSTTRP00000002820/1-697 AEHGLRPDIK TLTLLAEVVE PGTSAESSLL TILDAQQVEA DLTFFNTLMR bmy_13994T0/1-689 AEHGLRPDIK TLTLLAEVVE PGSPAESSLL TVLDAHQVEA DLTFFNTLMR BACU012110/1-684 AERGLRPDIK TLTLLAEVVE PGSAAESSLL TVLDAHQVEA DLTFFNTLMR 551 600 ENSBTAP00000027241/1-703 KKSKLGDLEG AKALLPVLAK RGIVPNLQTF CSLAIGCRRP DDGLRLLSDM ENSTTRP00000002820/1-697 RKSKLGDLEG AKALLPVLAK RGIVPNLQTF CSLAIGCHRP GDGLQLLADM bmy_13994T0/1-689 RKSKLGDLEG AKALLPVLAK RGIVPNLQTF CSLAIGCRRP GDGMQLLADM BACU012110/1-684 RKSKLGDLEG AKALLPVLAK RGIVPNLQTF CNLAIGCRRP GDGLQLLADM 601 650 ENSBTAP00000027241/1-703 RESQMSPNTH IYSTLINAAV KKLDYAYLID ILKDMRRNRV PVNEVVIRQL ENSTTRP00000002820/1-697 RKSQMTPSAH IYSTLINAAV KKLDYAYLID ILKDMRRNRV PVNEVVIRQL bmy_13994T0/1-689 RKSQMTPNAH IYSTLINAAV KKLDYAYLID ILKDMRRNRV PVNEVVIRQL BACU012110/1-684 RKSQMTPNAH IYSTLINAAI KKLDYAYLID ILKDMRRNRV PVNEVVIRQL 651 700 ENSBTAP00000027241/1-703 EFAAQYPPSF DRYKGKNTYL EKIDGFRAYY KQWLKGMPAE ETPHPWQKFQ ENSTTRP00000002820/1-697 EFAAQYPPTF DRYKGRNTYL EKIDGFRAYY KQWLKVMPAE ETPHPWQKFR bmy_13994T0/1-689 EFAAQYPPTF DRYKGRNTYL EKIDGFRAYY KQWLKVMPAE ETPHPWQKFR BACU012110/1-684 EFAAQYPPTF DRYKGRNTYL EKIDGFRAYY KQWLKVMPAE ETPHPWQKFR 701 750 ENSBTAP00000027241/1-703 TKPKGDQDTS TEADMDKGPG GR ENSTTRP00000002820/1-697 TKPKGDQDTV TVADVDRGPG GR bmy_13994T0/1-689 TKPKGDQDTV TVADVDRGPG GR BACU012110/1-684 TKPKGDQDTV TVADVDRGPG GR