KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:31:57 2014 Check: 00 .. Name: ENSP00000304467/1-689 Len: 772 Check: 8409 Weight: 1.00 Name: bmy_06680T0/1-691 Len: 772 Check: 4151 Weight: 1.00 Name: ENSBTAP00000027246/1-687 Len: 772 Check: 7263 Weight: 1.00 Name: BACU006509/1-728 Len: 772 Check: 7795 Weight: 1.00 Name: ENSTTRP00000007704/1-678 Len: 772 Check: 5573 Weight: 1.00 // 1 50 ENSP00000304467/1-689 MKPPA----- ---------- ---------- ---------- ------ACAG bmy_06680T0/1-691 MKPPA----- ---------- ---------- ---------- ------ACAG ENSBTAP00000027246/1-687 MKPPA----- ---------- ---------- ---------- ------ACTG BACU006509/1-728 MKPPAESSGA SPSALGNSGL SPGCYSDPDS EPEADTPGVG FCFLGPACAG ENSTTRP00000007704/1-678 MKPPA----- ---------- ---------- ---------- ------ACAG 51 100 ENSP00000304467/1-689 DMADAASPCS VVNDLRWDLS AQQIEERTRE LIEQTKRVYD QVGTQEFEDV bmy_06680T0/1-691 DALDVAAPCS AVNYLRWDLS AQQIGELTTK LIEETKHVYD RVGSQELQDV ENSBTAP00000027246/1-687 DALDVVAPCS AVNHLRWDLS AQQIAELTTE LIEQTKRVYD RVGAQEPQDV BACU006509/1-728 DVLDVAAPCS AVNYLQWDLS AQQIGELTTK LIEETKRVYD HVGSQELQDV ENSTTRP00000007704/1-678 DALDVAAPCS AVNYLRWDLS AQQIGELTTE LIEETKRVYD RVGSQELQDV 101 150 ENSP00000304467/1-689 SYESTLKALA DVEVTYTVQR NILDFPQHVS PSKDIRTAST EADKKLSEFD bmy_06680T0/1-691 SYENTLKALA DVEVSYTVQR NILDFPQHVS PSKDIRTAST EADKKLSEFD ENSBTAP00000027246/1-687 SYENTLKALA DVEVSYTVQR NILDFPQHVS PSKDIRTAST EADKKLSEFD BACU006509/1-728 SYENTLKALA DVEVSYTVQR NILDFPQHVS PSKDIRTAST EADKKLSEFD ENSTTRP00000007704/1-678 SYENTLKALA DVEVSYTVQR NILDFPQHVS PSKDIRTAST EADKKLSEFD 151 200 ENSP00000304467/1-689 VEMSMREDVY QRIVWLQEKV QKDSLRPEAA RYLERLIKLG RRNGLHLPRE bmy_06680T0/1-691 VEMSMRQDVY QRIVWLQ--- ---------- ---------- ---------- ENSBTAP00000027246/1-687 VEMSMRQDVY QRIVWLQEKV QKDSLRPEAS RYLERLIKLG RRNGLHLPEE BACU006509/1-728 VEMSMRQDVY QRIVWLQEKV QSDSLRPEAS RYLERLIRLG RRNGLHLPEE ENSTTRP00000007704/1-678 VEMSMRRDVY QRIVWLQEKV QSDSLRPEAS RYLERLISLG RRNGLHLPEE 201 250 ENSP00000304467/1-689 TQENIKRIKK KLSLLCIDFN KNLNEDTTFL PFTLQELGGL PEDFLNSLEK bmy_06680T0/1-691 ---KIKSIKK KLSLLCIDFN KNLNEDTTFL PFTREELGGL PEDFLNSLEK ENSBTAP00000027246/1-687 TQEKIKSIKK KLSLLCIDFN KNLNEDTTFL PFTREELGGL PEDFLNSLEK BACU006509/1-728 TQEKIKSIKK KLSLLCIDFN KNLNEDTTFL PFTREELGGL PEDFLNSLEK ENSTTRP00000007704/1-678 TQEKIKSIKK KLSLLCIDFN KNLNEDTTFL PFTREELGEL HEDFLNSLEK 251 300 ENSP00000304467/1-689 MEDGKLKVTL KYPHYFPLLK KCHVPETRRK VEEAFNCRCK EENCAILKEL bmy_06680T0/1-691 TEDEKLKVTL KYPHYFPLLK KCHVPETRRK AEEAFNCRCK EENCAILGEL ENSBTAP00000027246/1-687 TEDEKLKVTL KYPHYFPLLK KCHVPETRRK VEEAFNCRCK EENCAILREL BACU006509/1-728 TEDEKLKVTL KYPHYFPLLK KCHVPETRRK VEEAFNCRCK EENCAILGEL ENSTTRP00000007704/1-678 TEDEKLKVTL KYPHYFPLLK KCHVPETRRK VEEAFNCRCK RENCAILGEL 301 350 ENSP00000304467/1-689 VTLRAQKSRL LGFHTHADYV LEMNMAKTSQ TVATFLDELA QKLKPLGEQE bmy_06680T0/1-691 VSLRAQKSRL LGFSTHADYV LEMNMAKTSQ VVATFLDELA QKLKPLGEQE ENSBTAP00000027246/1-687 VRLRAQKSRL LGFSTHADYV LEMNMAKTSQ VVATFLDELA QKLKPLGEQE BACU006509/1-728 VSLRAQKSRL LGFSTHADYV LEMNMAKTSQ VVATFLDELA QKLKPLGEQE ENSTTRP00000007704/1-678 VSLRAQKSRL LGFSTHADYV LEMNMAKTSQ VVATFLDELA QKLKPLGEQE 351 400 ENSP00000304467/1-689 RAVILELKRA ECERRGLPFD GRIRAWDMRY YMNQVEETRY CVDQNLLKEY bmy_06680T0/1-691 RAVILELKKA ECERRGLHFD GRINAWDLRY YMNQVEETRY RVDQNLLKEY ENSBTAP00000027246/1-687 RAVILELKRA ECEQRGLAFD GRINAWDMRY YMNQVEETRY RVDQNLLKEY BACU006509/1-728 RAVILELKKA ECERRGLHFD GRINAWDMRY YMNQVEETRY RVDQNLLKEY ENSTTRP00000007704/1-678 RAVILELKEA ECQRRGLHFD GRINAWDMRY YMNQVEETRY RVDQNLLKEY 401 450 ENSP00000304467/1-689 FPVQVVTHGL LGIYQELLGL AFHHEEGASA WHEDVRLYTA RDAASGEVVG bmy_06680T0/1-691 FPMQVVTRGL LGIYQELLGL TFDLEEGATV WHEDVTLYAV RDAASGKVIG ENSBTAP00000027246/1-687 FPMQVVTRGL LGIYQELLGL SFQLEEGAAV WHEDVALYAV RDAASGKLIG BACU006509/1-728 FPMQVVTRGL LGIYQELLGL TFDLEEGATV WHEDVTLYTV RDTASGKVIG ENSTTRP00000007704/1-678 FPMQVVTRGL LGIYQELLGL TFDLEEGATV WHEDVTLYTV RDTASGKVIG 451 500 ENSP00000304467/1-689 KFYLDLYPRE GKYGHAACFG LQPGCLRQDG SRQIAIAAMV ANFTKPTADA bmy_06680T0/1-691 KFYLDLYPRE GKYGHAACFG LQPGCLRQDG SRQIAIAAMV ANFTKPTADA ENSBTAP00000027246/1-687 KFYLDLYPRE GKYGHAACFG LQPGCLRKDG SRQIAIAAMV ANFTKPTPDA BACU006509/1-728 KFYLDLYPRE GKYGHAACFG LQPGCLRQDG SRQIAIAAMV ANFTKPTADA ENSTTRP00000007704/1-678 KFYLDLYP-- -------CFG LQPGCLRQDG SRQIAIAAMV ANFTKPTPDA 501 550 ENSP00000304467/1-689 PSLLQHDEVE TYFHEFGHVM HQLCSQAEFA MFSGTHVERD FVEAPSQMLE bmy_06680T0/1-691 PSLLQHDEVE TYFHEFGHVM HQLCSQAEFA MFSGTHVERD FVEAPSQMLE ENSBTAP00000027246/1-687 PSLLQHDEVE TYFHEFGHVM HQLCSQAEFA MFSGTHVERD FVEAPSQMLE BACU006509/1-728 PSLLQHDEVE TYFHEFGHVM HQLCSQAEFA MFSGTHVERD FVEAPSQMLE ENSTTRP00000007704/1-678 PSLLQHDEVE TYFHEFGHVM HQLCSQAEFA MFSGTHVERD FVEAPSQMLE 551 600 ENSP00000304467/1-689 NWVWEQEPLL RMSRHYRTGS AVPRELLEKL IESRQANTGL FNLRQIVLAK bmy_06680T0/1-691 NWVWEVEPLL RMSQHYRTGS AVPQELLDKL IKSRQANTGL FNLRQIVLAK ENSBTAP00000027246/1-687 NWVWEAEPLL RMSQHYRTGS SIPQELLDKL IKSRQANTGL FNLRQIVLAK BACU006509/1-728 NWVWEVEPLL RMSQHYRTGS AVPQELLDKL IKSRQANTGL FNLRQIVLAK ENSTTRP00000007704/1-678 NWVWEVEPLL RMSQHYRTGS AVPQELLDKL IKSRQANTGL FNLRQIVLAK 601 650 ENSP00000304467/1-689 VDQALHTQTD ADPAEEYARL CQEILGVPAT PGTNMPATFG HLAGGYDAQY bmy_06680T0/1-691 VDQALHTQTP ADPAQEYARL SQEILGVPAT PGTNMPATFG HLAGGYDAQY ENSBTAP00000027246/1-687 VDQALHTQTA ADPAKEYARL CQEILGVPAT PGTNMPATFG HLAGGYDAQY BACU006509/1-728 VDQALHTQTP ADPAQEYARL SQEILGVPAT PGTNMPATFG HLAGGYDAQY ENSTTRP00000007704/1-678 VDQALHTQTA ADPAEEYARL SQEILGVPAT PGTNMPATFG HLAGGYDAQY 651 700 ENSP00000304467/1-689 YGYLWSEVYS MDMFHTRFKQ EGVLNSKV-- ---------- -GMDYRSCIL bmy_06680T0/1-691 YGYLWSEVYS ADMFHTRFKQ EGVLSGKVRG RPAXQTKMAV LGLGLDACAT ENSBTAP00000027246/1-687 YGYLWSEVYS ADMFHTRFKQ EGVLSGKV-- ---------- -GMDYRSCIL BACU006509/1-728 YGYLWSEVYS ADMFHTRFKQ EGVLSGKV-- ---------- -GMDYRSCIL ENSTTRP00000007704/1-678 YGYLWSEVYS ADMFHTRFKQ EGVLSGKV-- ---------- -GMDYRSCIL 701 750 ENSP00000304467/1-689 RPGGSEDASA MLRRFL---- ---------- ---------- -GRDPKQDAF bmy_06680T0/1-691 RLGLPGPEGP ALDLLLPCPL FSHSRGGHGL QKLHPEAGRL RGRQRHVKA- ENSBTAP00000027246/1-687 RPGGSEDASV MLKLFL---- ---------- ---------- -GRDPKQDAF BACU006509/1-728 RPGGSEDASV MLRLFL---- ---------- ---------- -GRDPKQDAF ENSTTRP00000007704/1-678 RPGGSQDASV MLRLFL---- ---------- ---------- -GRDPKQDAF 751 800 ENSP00000304467/1-689 LLSKGLQVGG CEPEPQVC-- -- bmy_06680T0/1-691 LPGSGPQAGR L---PPEQRA AG ENSBTAP00000027246/1-687 LLSKGLQVEG CE--PPAC-- -- BACU006509/1-728 LLSKGLQVEG CE--PPAC-- -- ENSTTRP00000007704/1-678 LLSKGLQVED CE--PPAC-- --