KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:31:58 2014 Check: 00 .. Name: ENSP00000335623/1-867 Len: 939 Check: 5630 Weight: 1.00 Name: ENSBTAP00000027247/1-901 Len: 939 Check: 1053 Weight: 1.00 Name: ENSTTRP00000003737/1-434 Len: 939 Check: 2273 Weight: 1.00 Name: bmy_21608T0/1-875 Len: 939 Check: 4306 Weight: 1.00 Name: BACU008268/1-781 Len: 939 Check: 1900 Weight: 1.00 // 1 50 ENSP00000335623/1-867 MDNPQALPLF LLL------- ---------- ---------- ASLVGIL-TL ENSBTAP00000027247/1-901 MDTSQALRLL LLL------- ---------- ---------- ASGVEVL-AF ENSTTRP00000003737/1-434 ---------- ---------- ---------- ---------- ---------- bmy_21608T0/1-875 MDTSRGLLLF LFLGKPPTQP LAHQFPFSAA QQLPPLLSSA ASGVRVL-AF BACU008268/1-781 MDTSRALLLF LFL------- ---------- ---------- ASGVRVLAAV 51 100 ENSP00000335623/1-867 RASSGLQQTN FSSAFSSDSK SSSQGLGVEV PSIKPPSWKV PDQFLDSKAS ENSBTAP00000027247/1-901 QASSEIQRTS ----LSSDLE SSSQGPGAKI PSNNLPSWKF PDQTAGSKVS ENSTTRP00000003737/1-434 ---------- ---------- ---------- ---------- ---------- bmy_21608T0/1-875 KASSRIQRTN ----LSSDSE SSSQGPGLKV PSIKPSSWKF PDQSPGSKAS BACU008268/1-781 KASSGIQRTN ----LSSDSE SSSQGPGLKV PSIKPPSWKF PDQSPGSKAS 101 150 ENSP00000335623/1-867 AGISDSSWFP EALS-SNMSG SFWSNVSAEG QDLSPVSPFS ETPGSEVFPD ENSBTAP00000027247/1-901 TDTPLSEWSP KGLDLND--- SFGSNISAQS ENLN-LEPFS GIPSSNVSPD ENSTTRP00000003737/1-434 ---------- ---------- ---------- ---------- ---------- bmy_21608T0/1-875 ADIPHSEWSP EVLNLKDVPG SFRSSVSAES KNLN-LDPFS GXPGSQVFPR BACU008268/1-781 ADIPHSEWSP EVLNLKEVPG SFRSSVSAES KNLN-LDPFS GIPGSQVFPR 151 200 ENSP00000335623/1-867 ISDPQVPAKD PKPSFTVKTP ASNISTQVSH TKLSVEAPDS KFSPDDMDLK ENSBTAP00000027247/1-901 TLGSQVAAPS WEPSLSLRTP ASSISAHFPD TKVSVEAPAS KYSPEDRDLE ENSTTRP00000003737/1-434 ---------- ---------- ---------- ---------- ---------- bmy_21608T0/1-875 TSGSQVPAPN PGPSSSVKTP ASK--RQVPN TNVSVEAPVS KFSPQDQDLK BACU008268/1-781 TSGSQVPAPN PEPSSSVKTP ASK--RQVPN TTVSVEAPVS KLSPQDQDLK 201 250 ENSP00000335623/1-867 LSAQSPESKF SAETHSAASF PQQVGGPLAV LVGTTIRLPL VPIPNPGPPT ENSBTAP00000027247/1-901 FSAQSLGSKV SSETHAGTSF PLQAGEPLAV LVGTTIQLRL VPVPSPGSPP ENSTTRP00000003737/1-434 ---------- ---------- ---------- ---------- ---------- bmy_21608T0/1-875 FFAQSLDSKV PSEAHSVPSL PPQVGGPLAV LVGTTIQLPL VPVPGLGPPS BACU008268/1-781 SSAWSLDSKV TSEARSGPSL PPQVGGPLAV LVGTTIQLPL APVPGLGPPS 251 300 ENSP00000335623/1-867 SLVVWRRGSK VLAAGGLGPG APLISLDPAH RDHLRFDQAR GVLELASAQL ENSBTAP00000027247/1-901 PLVVWRRGSK VLAAGGLGPG APLTSLDPTY RDRLRFDQAR GGLELTSAQL ENSTTRP00000003737/1-434 ---------- ---------- ---------- ---------- ---------- bmy_21608T0/1-875 PLVVWRQGSK VLVAGGLGPG DPLISLDPKY GDRLQFDQTR GSLELSSAQL BACU008268/1-781 PLLVWRQGSK VLVAGSLGPE APLISLDPTY GDRLRFDQTR GSLELSSAQL 301 350 ENSP00000335623/1-867 DDAGVYTAEV IRAGVSQQTH EFTVGVYEPL PQLSVQPKAP ETEEGAAELR ENSBTAP00000027247/1-901 KDAGVYTVEV IQAGVSRQIR EFTVGVYEPL PELSMQPKAP ETQEGAAELR ENSTTRP00000003737/1-434 ---------- ---------- ---------- ---------- ---------- bmy_21608T0/1-875 EDAGLYTAEV IQAGVSRQIW EFMVRVYEPV SKLSVKPEVP ETEEGAAELR BACU008268/1-781 EDAGLYTAEV IQAGVSRQIW EFMVRVYEPV SKLSVKPEVP ETEEGAAELR 351 400 ENSP00000335623/1-867 LRCLGWGPGR GELSWSRDGR ALEAAESEGA ETPRMRSEGD QLLIVRPVRS ENSBTAP00000027247/1-901 LRCMGWGPGR GELSWTRDGR ALDTVGSAGA EPPRIRAEGD QLLIARPVRS ENSTTRP00000003737/1-434 ---------- ---------- ---------- ---------- ---------- bmy_21608T0/1-875 LRCVGWRPGR GELSWTRDGR VLGAADPAGV EPLRVRVEGD QLLIARPTRS BACU008268/1-781 LRCVGWRPGR GELSWTRDGR VLGSADPAEV EPLRIRVEGD ELLIARPTRS 401 450 ENSP00000335623/1-867 DHARYTCRVR SPFGHREAAA DVSVFYGPDP PTITVSSDRD AAPARFVTAG ENSBTAP00000027247/1-901 DHARYTCRVH SPFGHTEAAA DVSVFYGPDL PVITVSSNRD ANPALYVTAG ENSTTRP00000003737/1-434 ---------- ---------- ---------- ---------- ---------- bmy_21608T0/1-875 DQARYTCRVH SPFGHTEAAT NVSVFYGPDL PVITVSSDRD ADPSLFVTAG BACU008268/1-781 DQARYTCRVH SPFGHTEAAT NVSVFY---- ---------- ---------- 451 500 ENSP00000335623/1-867 SNVTLRCAAA SRPPADITWS LADPAEAAVP AGSRLLLPAV GPGHAGTYAC ENSBTAP00000027247/1-901 SNVTLSCTAA SRPLADITWS LADPAEAAVP TGPRLLLPAV RPGHAGAYAC ENSTTRP00000003737/1-434 ---------- ---------- ----AEAAVP AGPRLLLPSV RIGHGGAYAC bmy_21608T0/1-875 SNVTLRCTAA SRPPADIAWS LADPAEAAVP AGPRLLLPAV RPGHGGAYAC BACU008268/1-781 ---------- ---------- ---------- ---------- ---------- 501 550 ENSP00000335623/1-867 LAANPRTGRR RRSLLNLTVA DLPPGAPQCS VEGGPGDRSL RFRCSWPGGA ENSBTAP00000027247/1-901 IARNPRTGSR RRSLLNLTVA DLPPGSPQCS VEGGPGDRSL RFRCSWPGGA ENSTTRP00000003737/1-434 LAANPRTGHR RRSLLRLLVA DLPPGSPQCS VEGGPGDRVL LFRCSWPGGV bmy_21608T0/1-875 LAANPRTGHR RRSLLKLLVA DLPPGSPQCS VEGGPGDRFL RFRCSWPGGF BACU008268/1-781 ---------- ---------- -LPPGSPQCS VEGGPGDLFL RFRCSWPGGF 551 600 ENSP00000335623/1-867 PAASLQFQGL PEGIRAGPVS SVLLAAVPAH PRLSGVPITC LARHLVATRT ENSBTAP00000027247/1-901 PAASLKFQGL PEGVQEGLAS PVLQAVVPAH PRLSGVPVTC LARHLVTTRT ENSTTRP00000003737/1-434 PAASLQFQGL PKGVQAEPVS SVLLEAVPAH PRLSGVPVTC LARHLMTTRT bmy_21608T0/1-875 PAASLQFQGL PKGVQAGPVS SVLLEAVPAH PRLSGVPVTC LARHLMTTRT BACU008268/1-781 PAASLQFQGL PKGVQAGPVS SVLLEAVPAQ PRLSGVPVTC LARHLMTTRT 601 650 ENSP00000335623/1-867 CTVTPEAPRE VLLHPLVAET RLGEAEVALE ASGCPPPSRA SWAREGRPLA ENSBTAP00000027247/1-901 CTVIPEAPQE VLLHPIVEET RSGEAEVALQ ASGCPPPSRA SWAREGRPIA ENSTTRP00000003737/1-434 CTVTPEAPRE VLLHPVVEET QSGKVEVALQ ASGCGPPSRA SWFREGRPLA bmy_21608T0/1-875 CIVTPEAPRE VLLHPMVEET RSGEAEVALQ ASGCPPPSRA SWAREGRPLA BACU008268/1-781 CTVTPEAPRE VLLHPMVEET QSGKVEVALQ ASGCLPPSRA SWAREGRPLA 651 700 ENSP00000335623/1-867 PGGGSRLRLS QDGRKLHIGN FSLDWDLGNY SVLCSGALGA GGDQITLIGP ENSBTAP00000027247/1-901 PGGGGRLQLT EDGRRLLIGN FSLDWDLGNY SVLCSGALGA GVDKITLIGP ENSTTRP00000003737/1-434 SRGRGHLLLS QDGQRLLIGN FSLNWDLGNY SVMCSGPLGA GTDRITLTGP bmy_21608T0/1-875 SGGLGRLQPS QDGQRLLIGN FSLDWDLGNY S--------- ---------- BACU008268/1-781 SGDQGRLRPS QDGQRLLIGN FSLDWDLGNY SVLCSGALGA GGDKITLTGP 701 750 ENSP00000335623/1-867 SISSWRLQRA RDAAVLTWDV ERGALISSFE IQAWPDGPAL GRTSTYRDWV ENSBTAP00000027247/1-901 SISSWRLQRT RDAAVLTWDV ERGALVSRFQ IQARVEAPDP GRAIAS-DWV ENSTTRP00000003737/1-434 SISSWRLQRT RHAAVLTWDV ERGALISSFQ IQ--PGEPDL SRATMSKDWT bmy_21608T0/1-875 --------RT RDAAVLTWDV ERGALISSFQ IQAQVESPDL SRATASEDWI BACU008268/1-781 SISSWRLQRT RDAAVLTWDV ERGALISSFQ IQAQVENPDL SKATASKDWI 751 800 ENSP00000335623/1-867 SLLILGPQER SAVVPLPPRN PGTWTFRILP ILGGQPGTPS QSRVYRAGPT ENSBTAP00000027247/1-901 SLLILGPRER SAVVPLPLQN PRTWVFRILP TLGDQPGTPS QSQIYRVGPT ENSTTRP00000003737/1-434 SLLTLGPRDR SAVVPLLPQK PQVWVFRILP TLGLQPGTPS DSRVCCAGPI bmy_21608T0/1-875 SLLTLGPRDR SAVVPLLPQK PRVWVFRILP TLGHQPGTPS QSQVYRVGPT BACU008268/1-781 SLLTLGAQDR SAVVSLLPQK PRAWVFRILP TLGNQPGTPS QSQVYRAGPI 801 850 ENSP00000335623/1-867 LSHGAIAGIV LGSLLGLALL AVLLLLCICC LCRFRGKTPE KKKHPSTLVP ENSBTAP00000027247/1-901 LGPGAIAGIV LGSLLGLALL AALLLLCICC LCRSRREAHK KKKQPGTWTP ENSTTRP00000003737/1-434 LGPGAIAGIV LGSLLGLGLL AALLILGICY LCRFQGKTPN RKKRTPRLTP bmy_21608T0/1-875 LGPGAIAGIV LGSLLGLALL AALLILCIYY LCHFQGQTPS KKKHHSRLTR BACU008268/1-781 LGPGAIAGIV LGSLLGLALL AALLILCICY LCHFQGETPN KKKHPPKLTP 851 900 ENSP00000335623/1-867 VVTPSEKKMH SVTPVEISWP LDLKVPLEDH SSTRAYQ--- ------AQTP ENSBTAP00000027247/1-901 VVPQPEKKVQ SLTPVHTPQP LPLKVPLENP SPIRAHPVSH WHASRWGPQN ENSTTRP00000003737/1-434 VFTVPENKMQ SVTPEQTPQP LPLEVPLEDP SPTRAHP--- ------GPGP bmy_21608T0/1-875 VFSLPERKFQ SVTPEQTPQP LPLSVPLEDP SPTRAHP--- ------ATGP BACU008268/1-781 VFSLPERKFQ SETPEQTPQP LPLSVPLEDP SPTRAHP--- ------ATDL 901 950 ENSP00000335623/1-867 VQLSL----- ---------- ---------- --------- ENSBTAP00000027247/1-901 RSGSYT-GVS QASGSLCAGL WGWDFLFRLR SSQELPVPL ENSTTRP00000003737/1-434 RTVSFPRGDP KI-------- --------AR TATHV---- bmy_21608T0/1-875 RTVNFSHGVP KT-------- --------VR AATQV---- BACU008268/1-781 RTVNFSHGVP KT-------- --------VR AATQV----