KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:32:01 2014 Check: 00 .. Name: ENSTTRP00000006785/1-1200 Len: 1229 Check: 5496 Weight: 1.00 Name: ENSP00000450607/1-1208 Len: 1229 Check: 9596 Weight: 1.00 Name: BACU018285/1-1223 Len: 1229 Check: 9530 Weight: 1.00 Name: ENSBTAP00000027263/1-1216 Len: 1229 Check: 1501 Weight: 1.00 Name: bmy_03916T0/1-1160 Len: 1229 Check: 633 Weight: 1.00 // 1 50 ENSTTRP00000006785/1-1200 VDLYMMNCEL LATCSALGYL EGDTYHKEPD CLESVKDLIR YLRHEDETRD ENSP00000450607/1-1208 MDLHMMNCEL LATCSALGYL EGDTYHKEPD CLESVKDLIR YLRHEDETRD BACU018285/1-1223 MDLNMMNCEL LATCSALGYL EGDTYHKEPD CLESVKDLIR YLRHEDETRD ENSBTAP00000027263/1-1216 VDLSMMNCEL LATCSALGYL EGDTYHKEPD CLESVKDLIR YLRHEDETRD bmy_03916T0/1-1160 MDLYMMNCEL LATCSALGYL EGDTYHKEPD CLESVKDLIR YLRHEDETRD 51 100 ENSTTRP00000006785/1-1200 VRQQLGAAQI LQSDLLPILT QHRQDKPLFH AVIRLMVNLT QPALLCFGSV ENSP00000450607/1-1208 VRQQLGAAQI LQSDLLPILT QHHQDKPLFD AVIRLMVNLT QPALLCFGNL BACU018285/1-1223 VRQQLGAAQI LQSDLLPILT QHRQDQSLFH AVIRLMVNLT QPALLCFGSV ENSBTAP00000027263/1-1216 VRQQLGSAQI LQSDLLPILT QHRQDKPLFD AVIRLMVNLT QPALLCFGSV bmy_03916T0/1-1160 VRQQLGAAQI LQSDLLPILT QHRQDQSLFH AVIRLMVNLT QPALLCFGSV 101 150 ENSTTRP00000006785/1-1200 PKEPSFRHHF LQVLAYLQAY KEAFASEKAF GVLSETLYEL LQLGWEERQE ENSP00000450607/1-1208 PKEPSFRHHF LQVLTYLQAY KEAFASEKAF GVLSETLYEL LQLGWEERQE BACU018285/1-1223 PKEPSFRHHF LQVLAYLQAY KEAFASEKAF GVLSETLYEL LQLGWEERQE ENSBTAP00000027263/1-1216 PKEPSFRHHF LQVLAYLQAY KEAFASEKAF GVLSETLYEL LQLGWEERQE bmy_03916T0/1-1160 PKEPSFRHHF LQVLAYLQAY KEAFASEKXF GVLSETLYEL LQLGWEERQE 151 200 ENSTTRP00000006785/1-1200 EDSLLIERIL LLVRNVLHVP ADLDQ--RID DDASVHDRLL WAIHLSGLDD ENSP00000450607/1-1208 EDNLLIERIL LLVRNILHVP ADLDQEKKID DDASAHDQLL WAIHLSGLDD BACU018285/1-1223 EDSLLIERIL LLVRNVLHVP ADLDQEKRID DDASVHDRLL WAIHLSGLDD ENSBTAP00000027263/1-1216 EDNLLIERIL LLVRNVLHVP ADLEQEKRID DDASVHDRLL WAIHLSGLDD bmy_03916T0/1-1160 EDSLLIERIL LLVRNVLHVP ADLDQEKRID DDASVHDRLL WAIHLSGLDD 201 250 ENSTTRP00000006785/1-1200 LLLFLASSTA EHQWSLHVLE IISLMFRDQN PEQLAGVGQG RLAQEQRTAV ENSP00000450607/1-1208 LLLFLASSSA EEQWSLHVLE IVSLMFRDQN PEQLAGVGQG RLAQERSADF BACU018285/1-1223 LLLFLASATA EHQWSLHVLE IISLMFRDQN PEQLAGVGQG RLAQERRTAV ENSBTAP00000027263/1-1216 LLLFLASSPA EQQWSLHVLE IISLMFRDQN PEQLAGVGQG RLAQERRTDV bmy_03916T0/1-1160 LLLFLASSTA EHQWSLHVLE IISLMFRDQN PEQLAGVGQG RLAQERRTAV 251 300 ENSTTRP00000006785/1-1200 AELEVLRQRE MAEKKTRALQ RGNRHSRFGG SYIVQGLKSI GERDLIFHKG ENSP00000450607/1-1208 AELEVLRQRE MAEKKTRALQ RGNRHSRFGG SYIVQGLKSI GERDLIFHKG BACU018285/1-1223 AELEVLRQRE MAEKKTRALQ RGNRHSRFGG SYIVQGLKSI GERDLIFHKG ENSBTAP00000027263/1-1216 AELEVLRQRE MAEKKTRALQ RGNRHSRFGG SYIIQGLKSI GERDLVFHKG bmy_03916T0/1-1160 AELEVLRQRE MAEKKTRALQ RGNRHSRFGG SYIVQGLKSI GERDLIFHKG 301 350 ENSTTRP00000006785/1-1200 LHNLQNYTSD LGKQPRRVPK RRQAARELSV QRRSALNVRL FLRDFCSEFL ENSP00000450607/1-1208 LHNLRNYSSD LGKQPKKVPK RRQAARELSI QRRSALNVRL FLRDFCSEFL BACU018285/1-1223 LHNLQNYTSD LGKQPRRVPK RRQAARELSV QRRSALNVRL FLRDFCSEFL ENSBTAP00000027263/1-1216 LHNLQNYTSD LGKQPRRVPK RRQAARELSI QRRSALNVRL FLRDFCSEFL bmy_03916T0/1-1160 LHNLQNYTSD LGKQPRRVPK RRQAVRELSV QRRSALNVRL FLRDFCSEFL 351 400 ENSTTRP00000006785/1-1200 ENCYNRLMGS VKDHLLREKA QQHDETYYMW ALAFFMAFNR AASFRPGLVS ENSP00000450607/1-1208 ENCYNRLMGS VKDHLLREKA QQHDETYYMW ALAFFMAFNR AASFRPGLVS BACU018285/1-1223 ENCYNRLMGS VKDHLLREKA QQHDETYYMW ALAFFMAFNR AASFRPGLVS ENSBTAP00000027263/1-1216 ENCYNRLMGS VKDHLLREKA QQHDETYYMW SLAFFMAFNR AASFRPGLVS bmy_03916T0/1-1160 ENCYNRLMGS VKDHLLREKA QQHDETYYMW ALAFFMAFNR AASFRPGLVS 401 450 ENSTTRP00000006785/1-1200 ETLTVRTFHF IEQNLTNYYE MMLTDRKEAT SWARRMHLAL KAYQELLATV ENSP00000450607/1-1208 ETLSVRTFHF IEQNLTNYYE MMLTDRKEAA SWARRMHLAL KAYQELLATV BACU018285/1-1223 ETLSVRTFHF IEQNLTKYYE MMLTDRKEAT SWARRKHLAL KAYQELLATV ENSBTAP00000027263/1-1216 ETLSVRTFHF IEQNLTNYYE MMLTDRKEAV SWARRMHLAL KAYQELLATV bmy_03916T0/1-1160 ETLTVRTFHF IEQNLTKYYE MMLTDRKEAT SWARRMHLAL KAYQELLATV 451 500 ENSTTRP00000006785/1-1200 NEMNASPDEA VRESSRIIQN NIFYVMEYRE LFLALFRKFN ERCQPRSFLR ENSP00000450607/1-1208 NEMDISPDEA VRESSRIIKN NIFYVMEYRE LFLALFRKFD ERCQPRSFLR BACU018285/1-1223 NEMNVSPDEA VRESSRIIQN NIFYVMEYRE LFLALFRKFD ERCQPRSFLR ENSBTAP00000027263/1-1216 NEMDVCPDEA VRESSRIIKN NIFYVMEYRE LFLALFRKFD ERCQPRSFLR bmy_03916T0/1-1160 NEMNVSSDEA VRESSRIIQN NIFYVMEYRE LFLALFRKFD ERCQPRSFLR 501 550 ENSTTRP00000006785/1-1200 DLVETTHLFL KMLERFCRSR GNLMVQ---X XXXXXXXXXX XXXXXXXXXX ENSP00000450607/1-1208 DLVETTHLFL KMLERFCRSR GNLVVQ--NK QKKRRKKKKK VLDQAIVSGN BACU018285/1-1223 DLVETTHLFL KMLERFCRSR GNMMVQVLGS PGCRKSWGER VGDRKDRGLF ENSBTAP00000027263/1-1216 DLVETTHLFL KMLERFCRTR GNLMVQ---N KRKKRKKKKK ALDQSVASGN bmy_03916T0/1-1160 DLVETTHLFL KMLERFCRSR GNLMVQ---N KRKKRKKKKK VLDQSVASGN 551 600 ENSTTRP00000006785/1-1200 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXX- XXXXXXXXXX ENSP00000450607/1-1208 VPSSPEEVEA VWPALAEQLQ CCAQNSELSM DSVVPFDAA- SEVPVEEQRA BACU018285/1-1223 LLTFSVAQAE QICSFSRLLF KVSLPQETSH VLFLGFAMAF YAQPCSRSYP ENSBTAP00000027263/1-1216 APYSPEELEA MWPSLAEQLQ CRAQDSELSL DSVVPFDAA- SEVPVEEQRA bmy_03916T0/1-1160 VPYSPEELES VWPSLAEQLQ CCAQDPELSL DSMVPFDAA- SEVPVEEQRA 601 650 ENSTTRP00000006785/1-1200 XXXXXXXXXX XXXXXXXXXX XXXXXXXEVW PEGDVFGSQD ISPEEEIQLL ENSP00000450607/1-1208 EAMVRIQDCL LAGQAPQALT LLRSAR-EVW PEGDVFGSQD ISPEEEIQLL BACU018285/1-1223 GCSVIYLSTY LS--PPLGHK RLKGKEMEVW PEGDVFGSQN ISPEEEIQLL ENSBTAP00000027263/1-1216 EAMVRIQDCL LAGQAPQALS LLRSAR-EVW PERDVFGAQD ISPEEEIQLL bmy_03916T0/1-1160 EAMVRIQDCL LAGQAPQALT LLRSAR-EVW PEGDVFGSQN ISPEEEIQLL 651 700 ENSTTRP00000006785/1-1200 KQIVWAPLPR QQGPEEQGA- EEEDEEEVEE EELHMVEVLE KEFNFLDYLK ENSP00000450607/1-1208 KQILSAPLPR QQGPEERGAE EEEEEEEEEE EELQVVQVSE KEFNFLDYLK BACU018285/1-1223 KQIFWAPLPR QQGPEEQGA- EEEDEEEEEE EELHVVEVLE KEFNFLDYLK ENSBTAP00000027263/1-1216 KQILLAPLPR QQGLEEQGA- EEEDEEEEEE EELEVVQVSE REFNFLDYLK bmy_03916T0/1-1160 KQIFWAPLPR QQGPEEQGA- EEEDEEEEEE EELHVVEVLE KEFNFLDYLK 701 750 ENSTTRP00000006785/1-1200 RFANSTVIQA YVLLLRSYKQ NSAHTNHCVV KMLHRLAYDL KMEALLFQLS ENSP00000450607/1-1208 RFACSTVVRA YVLLLRSYQQ NSAHTNHCIV KMLHRLAHDL KMEALLFQLS BACU018285/1-1223 RFANSTVIQA YVLLLRSYKQ NSAHTNHCVV KMLHRLAYDL KMEALLFQLS ENSBTAP00000027263/1-1216 RFANSTVLRA YLLLLRSYKQ NSAHTNHCVV KMLHRLAHDL KMEALLFQLS bmy_03916T0/1-1160 RFANSTVIQA YVLLLRSYKQ NSAHTNHCVV KMLHRLAYDL KMEALLFQLS 751 800 ENSTTRP00000006785/1-1200 LFCLFNRLLS DPAAGAYKEL VTFSRYILGK FFALAAVNQK AFVELLFWKN ENSP00000450607/1-1208 VFCLFNRLLS DPAAGAYKEL VTFAKYILGK FFALAAVNQK AFVELLFWKN BACU018285/1-1223 LFCLFNRLLS DPAAGAYKEL VTFAKYILGK FFALAAVNQK AFVELLFWKN ENSBTAP00000027263/1-1216 LFYLFNRLLS DPAAGAYKEL VTFAKYILGK FFALAAVNQK AFVELLFWKN bmy_03916T0/1-1160 LFCLFNRLLS DPAAGAYKEL VTFAKYILGK FFALAAVNQK AFVELL---- 801 850 ENSTTRP00000006785/1-1200 TAVVREMTEG YGSLDGRSSS HRPPVWSPEE EAQLQELYLA HKDVEGQDVV ENSP00000450607/1-1208 TAVVREMTEG YGSLDDRSSS RRAPTWSPEE EAHLRELYLA NKDVEGQDVV BACU018285/1-1223 TAVVREMTEG YGSLDGGSSS RRCPVWSPEE EAQLQELYLA HKDVEGQDVV ENSBTAP00000027263/1-1216 TAVVREMTEG YGTLDGGSSS RRLPGWSPEE EAQLRELYLA HKDVEGQDVV bmy_03916T0/1-1160 ---------- -------SSS RRPPVWSPEE EAQLQELYLA HKDVEGQDVV 851 900 ENSTTRP00000006785/1-1200 DTILAHLKTA PRTRKQVIHR LVQLGLADSV KDFQ-RKGTQ IVLWTEEQEL ENSP00000450607/1-1208 EAILAHLNTV PRTRKQIIHH LVQMGLADSV KDFQ-RKGTH IVLWTGDQEL BACU018285/1-1223 DTILAHLKTA PRTRKQVIHH LVQLGLADSV KDFQ-RKGTQ IVLWTEDQEL ENSBTAP00000027263/1-1216 DTILAHLKTA PRTRRQVIHH LVRLGLADSV KDFQSRKGTQ IVLWTEDQEL bmy_03916T0/1-1160 DTILAHLKTA PRTRKQVIHH LVQLGLADSV KDFQ-RKGTQ IVLWTEDQEL 901 950 ENSTTRP00000006785/1-1200 ELQRLFEEFQ GSDDILGNIM KNITAKRSRA RIVDKLLALG LVAERRELYK ENSP00000450607/1-1208 ELQRLFEEFR DSDDVLGHIM KNITAKRSRA RIVDKLLALG LVAERRELYK BACU018285/1-1223 ELQRLFEEFQ DSDDVLGNIM KNITAKRSRA RIVDKLLALG LVAERRELYK ENSBTAP00000027263/1-1216 ELQRLFEEFQ DSDDVLGNIM KNITAKRSRA RIVDKLLALG LVAERRELYK bmy_03916T0/1-1160 ELQRLFEEFQ DSDDVLGNIM KNITAKRSRA RIVDKLLALG LVAERRELYK 951 1000 ENSTTRP00000006785/1-1200 KRQKKLAPSS LPNEEESLND FCQEDLEEEE NLPEEESEED EEKEEGSEAE ENSP00000450607/1-1208 KRQKKLASSI LPNGAESLKD FCQEDLEEEE NLPEEDSEEE EEG--GSEAE BACU018285/1-1223 KRRKKLAPSS LPNEEESLND FCQEDLEEEE NLPEEESEED EEKEEGSEAE ENSBTAP00000027263/1-1216 KRRKKLAPLS LPNEEESLHD FCQEDLEEEE NVPEKDNEED EEKE-GSEAE bmy_03916T0/1-1160 KRRKKLAPSS LPNEEESLHD FCQEDLEEEE NLPEEESKEY EEKEEGSEAE 1001 1050 ENSTTRP00000006785/1-1200 QAHGGSVLST QNLGQNLHQE GFSAPLLWLQ NCLIRAADDR EEFGCSQAVP ENSP00000450607/1-1208 QVQGSLVLSN ENLGQSLHQE GFSIPLLWLQ NCLIRAADDR EEDGCSQAVP BACU018285/1-1223 QTHSGSVLST QNLGQNLHQE GFSAPLLWLQ NCLIRAAEDR EEVGCSQAVP ENSBTAP00000027263/1-1216 QPQGGSIISA EYLGQSLHQE GFSAPLLWLQ NCLIRAADDR EEAGCSQAVP bmy_03916T0/1-1160 QAHGGSVLST QNLGQNLHQE GFSAPLLWLQ NCLIRAAEDR EE-------- 1051 1100 ENSTTRP00000006785/1-1200 LVPLTEENEE AMENEQFQQL LQKLRVRPPA SGQETFWRIP AKLSPTQLRR ENSP00000450607/1-1208 LVPLTEENEE AMENEQFQQL LRKLGVRPPA SGQETFWRIP AKLSPTQLRR BACU018285/1-1223 LVPLTEENEE AMENEQFQQL LQKLRVRPPA SGQETFWRIP AKLSPTQLRR ENSBTAP00000027263/1-1216 LVPLTEENEE AMENEQFQQL LRKLGVRPPA SGQETFWRIP AKLNPTQLRR bmy_03916T0/1-1160 ---------- ---------- ---------- ---ETFWRIP AKLSPTQLRR 1101 1150 ENSTTRP00000006785/1-1200 MAASLSQPEE EEKLQPGLEP KVPGEQGPEE EH-------- --------RA ENSP00000450607/1-1208 AAASLSQPEE EQKLQPELQP KVPGEQGSDE EH-------- ----CKEHRA BACU018285/1-1223 MAASLSQPEE EEKLQPGLEP KVPGEQGPEE EHQQEEAHQQ EEERQKEHRA ENSBTAP00000027263/1-1216 MSASLSQAEE EEKLQLGLES KVPGEPGLEE EHQQEEEHQQ EEEHQKEHRA bmy_03916T0/1-1160 MAASLSQPEE EEKLQPGLEP KVPGEQGPEE EHQQEEAHQQ EEERQKEHRA 1151 1200 ENSTTRP00000006785/1-1200 HAPRALLSAR KERAGLLSPE EE--TGGKEQ LKALERQ--- LDSDEEKEED ENSP00000450607/1-1208 QALRALLLAH KKKAGLASPE EEDAV-GKEP LKAAPKKRQL LDSDEEQEED BACU018285/1-1223 HAPRALLSAR KKKAGLVSP- -EGTDGGKEQ LKVAPKKRQL LDSDEEKEED ENSBTAP00000027263/1-1216 HALRTLMLAR KKEAGLVSPE EEGTSGGKEQ LIMAPKKRQL LDSDEEQEED bmy_03916T0/1-1160 HAPRALLSAR KKKADLVSPE EEGTDGGKEQ LKVAPKKRQL LDSDEEKEED 1201 1250 ENSTTRP00000006785/1-1200 EGGSKAPELG APGIRKKKRF QIEDDDESD ENSP00000450607/1-1208 EGRNRAPELG APGIQKKKRY QIEDDEDD- BACU018285/1-1223 EGGSKAPELG APGIRKKKRF QIEDDDESD ENSBTAP00000027263/1-1216 ----KAPELG VPGIRKKKRF QIEDDDE-- bmy_03916T0/1-1160 EGRSKAPELG APGIRKKKRF QIEDDDESD