KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:32:02 2014 Check: 00 .. Name: ENSTTRP00000012258/1-677 Len: 917 Check: 2567 Weight: 1.00 Name: ENSP00000217289/1-677 Len: 917 Check: 9422 Weight: 1.00 Name: ENSBTAP00000027271/1-677 Len: 917 Check: 5868 Weight: 1.00 Name: bmy_14743T0/1-611 Len: 917 Check: 9217 Weight: 1.00 Name: BACU014772/1-898 Len: 917 Check: 8938 Weight: 1.00 // 1 50 ENSTTRP00000012258/1-677 ---------- ---------- ---------- ---------- ---------- ENSP00000217289/1-677 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027271/1-677 ---------- ---------- ---------- ---------- ---------- bmy_14743T0/1-611 ---------- ---------- ---------- ---------- ---------- BACU014772/1-898 MPVVVLYYCT FQVIMGIVKV ILFTKLSQPE NNTIAEENRA KTRPGKEEDC 51 100 ENSTTRP00000012258/1-677 ---------- ---------- ---------- ---------- ---------- ENSP00000217289/1-677 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027271/1-677 ---------- ---------- ---------- ---------- ---------- bmy_14743T0/1-611 ---------- ---------- ---------- ---------- ---------- BACU014772/1-898 QVLSIQSHVI CGYVGNRATT LPLQVLGFKI DVVNSVQFSN HTGYLHWNGQ 101 150 ENSTTRP00000012258/1-677 ---------- ---------- ---------- ---------- ---------- ENSP00000217289/1-677 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027271/1-677 ---------- ---------- ---------- ---------- ---------- bmy_14743T0/1-611 ---------- ---------- ---------- ---------- ---------- BACU014772/1-898 ALNSDELHEL YDELELNNMN KYDYVLTGYM QDKFFLAMVV DTRKELKQQN 151 200 ENSTTRP00000012258/1-677 ---------- ---------- ---------- ---------- ---------- ENSP00000217289/1-677 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027271/1-677 ---------- ---------- ---------- ---------- ---------- bmy_14743T0/1-611 ---------- ---------- ---------- ---------- ---------- BACU014772/1-898 SSLLVMYVPV MGDKWNREGS IYLPEDLLLV YREEVMPVAD IITPNQFEAE 201 250 ENSTTRP00000012258/1-677 ---------- ---------- -MLSSSDFAS ASWELVIQVD HPSEEEQKDI ENSP00000217289/1-677 ---------- ---------- -MLSSTDFTF ASWELVVRVD HPNEEQQKDV ENSBTAP00000027271/1-677 ---------- ---------- -MLSSSDFAS ASWELVVRVD HPNEEEQKDI bmy_14743T0/1-611 ---------- ---------- -MLSSSDFAS ASWELVIQVD HPNEEEQKDV BACU014772/1-898 LLSWRKIHSQ EEDLATPAFA TMLSSSDFAS ASWELVIQVD HPNEEEQKDV 251 300 ENSTTRP00000012258/1-677 TLRVSGDLHI GGVMLKLVEQ INIAQDWSDF ALWWEQKHCW LLKTHWTLDK ENSP00000217289/1-677 TLRVSGDLHV GGVMLKLVEQ INISQDWSDF ALWWEQKHCW LLKTHWTLDK ENSBTAP00000027271/1-677 TLRVSGDLHI GGVMLKLVEQ INIAQDWSDF ALWWEQKHCW LLKTHWTLDK bmy_14743T0/1-611 TLRVSGDLHI GGVMLKLVEQ INIAQDWSDF ALWWEQKHCW LLKTHWTLDK BACU014772/1-898 TLRVSGDLHI GGVMLKLVEQ INIAQDWSDF ALWWEQKHCW LLKTHWTLDK 301 350 ENSTTRP00000012258/1-677 CGVQADAKLL FTPQHKMLRL RLPNVKTVRL RVSFSAVVFR AVSDICRALN ENSP00000217289/1-677 YGVQADAKLL FTPQHKMLRL RLPNLKMVRL RVSFSAVVFK AVSDICKILN ENSBTAP00000027271/1-677 CGVQADAKLV FTPQHKMLRL RLPNMKTVRL RVSFSTVVFR AVSDICRALN bmy_14743T0/1-611 CGVQADAKLL FTPQHKMLRL RLPNVKTVRL RVSFSAVVFR AVSDICRAL- BACU014772/1-898 CGVQADAKLL FTPQHKMLRL RLPNVKTVRL RVSFSAVVFR AVSDICRALN 351 400 ENSTTRP00000012258/1-677 IRRAEEVSLL KPSGEYFKKK KRKEKNNKEP IIEDILSLEC SPTNSGPPVS ENSP00000217289/1-677 IRRSEELSLL KPSGDYFKKK KKKDKNNKEP IIEDILNLES SPTASGSSVS ENSBTAP00000027271/1-677 IRRAEELSLL KPSGEYFKKK KKKDKNNKEP IIEDILNLEG SPTISGPSVS bmy_14743T0/1-611 ---------- ---------- ---------- ---------- --------IS BACU014772/1-898 IRRAEEVSLL KPSGEYFKKK KRKEKNNKEP IIEDILSLEC SPTNSGPPVS 401 450 ENSTTRP00000012258/1-677 PGLYSRTMTP TYDPINGTPA SSTMTWFSDS PLTEQNCSIL AFSQPPQSPE ENSP00000217289/1-677 PGLYSKTMTP IYDPINGTPA SSTMTWFSDS PLTEQNCSIL AFSQPPQSPE ENSBTAP00000027271/1-677 PGLYSKTMTP TYDPINGTPA SSTMTWFSDS PLAEQNCSIL AFSQPPQSPE bmy_14743T0/1-611 PGLYSRTMTP TYDPINGTPV SSTMTWFSDS PLTEQNCSIL AFSQPPQSPE BACU014772/1-898 PGLYSRTMTP TYDPINGTPA SSTMTWFSDS PLTEQNCSIL AFSQPPQSPE 451 500 ENSTTRP00000012258/1-677 ALADMYQPRS LVDKAKLNAG WLDSSRSLME QGIQEDEQLL LRFKYYTFFD ENSP00000217289/1-677 ALADMYQPRS LVDKAKLNAG WLDSSRSLME QGIQEDEQLL LRFKYYSFFD ENSBTAP00000027271/1-677 ALADMYQSRS LADKAKLNSG WLDSSRSLME QGIQEDEQLL LRFKYYTFFD bmy_14743T0/1-611 ALADMYQPRS LVDKAKLNAG WLDSSRSLME QGIQEDEQLL LRFKYYTFFD BACU014772/1-898 ALADMYQPRS LVDKAKLNAG WLDSSRSLME QGIQEDEQLL LRFKYYTFFD 501 550 ENSTTRP00000012258/1-677 LNPKYDAVRI NQLYEQARWA ILLEEIDCTE EEMLIFAALQ YHISKLSLST ENSP00000217289/1-677 LNPKYDAVRI NQLYEQARWA ILLEEIDCTE EEMLIFAALQ YHISKLSLSA ENSBTAP00000027271/1-677 LNPKYDAVRI NQLYEQARWA ILLEEIDCTE EEMLIFAALQ YHISKLSLST bmy_14743T0/1-611 LNPKY----- ---------- ---------- ---------- -HISKLSLST BACU014772/1-898 LNPKYDAVRI NQLYEQARWA ILLEEIDCTE EEMLIFAALQ YHISKLSLST 551 600 ENSTTRP00000012258/1-677 EIQDFTNESE VDEVEAALSN LEVTLEGGKA DNTLXXXXXX X--------- ENSP00000217289/1-677 ETQDFAGESE VDEIEAALSN LEVTLEGGKA DSLLEDITDI P--------- ENSBTAP00000027271/1-677 EIQDFTNESE VDEVEAALSN LEVTLEGGKA DNTLEDITDI P--------- bmy_14743T0/1-611 EIQDFTNESE VDEVEAALSN LEVTLEGGKA DNTLVNLKLL KRQRSFLPSS BACU014772/1-898 EIQDFTNEPE VDEVEAALSN LEVTLEGGKA DNTLEDITDI P--------- 601 650 ENSTTRP00000012258/1-677 ---XXXXXXX XXXPKKLILK AFKQYWFVFK DTSIAYFKNK ELEQGEPVEK ENSP00000217289/1-677 ---KLADNLK LFRPKKLLPK AFKQYWFIFK DTSIAYFKNK ELEQGEPLEK ENSBTAP00000027271/1-677 ---KLADNLR LFRPKKLILK AFKQYWFVFK DTSIAYFKNK ELEQGEPVEK bmy_14743T0/1-611 WKERAATFVM VPRPKKLILK AFKQYWFIFK DTSIAYFKNK ELEQGEPVEK BACU014772/1-898 ---KLADNLR LFRPKKLILK AFKQYWFVFK DTSIAYFKNK ELEQGEPVEK 651 700 ENSTTRP00000012258/1-677 LNLRGCEVVP DVNVAGRKFG IKLLIPVADG MNEVYLRCDH -------ESQ ENSP00000217289/1-677 LNLRGCEVVP DVNVAGRKFG IKLLIPVADG MNEMYLRCDH -------ENQ ENSBTAP00000027271/1-677 LNLRGCEVVP DVNVAGRKFG IKLLIPVADG MNEVYLRCDH -------ESQ bmy_14743T0/1-611 LNLRGCEVVP DVNVAGRKFG IKLLIPVADG MNEVYLRCDH VSKTTKMESQ BACU014772/1-898 LNLRGCEVVP DVNVAGRKFG IKLLIPVADG MNEVYLRCDH -------ESQ 701 750 ENSTTRP00000012258/1-677 YAQWMAACIL ASKGKTMADS SYQPEVLNIL SFLRMKNRNS ASQVASGLEN ENSP00000217289/1-677 YAQWMAACML ASKGKTMADS SYQPEVLNIL SFLRMKNRNS ASQVASSLEN ENSBTAP00000027271/1-677 YAQWMAACIL ASKGKTMADS SYQPEVLNIL SFLKMKNRNS APQVASGLEN bmy_14743T0/1-611 YAQWMAACIL ASKGKTMADS SYQPEVLNIL SFLRMKNRNS ASQVASSLEN BACU014772/1-898 YAQWMAACIL ASKGKTMADS SYQPEVLNIL SFLRMKNRNS ASQVASSLEN 751 800 ENSTTRP00000012258/1-677 MDMNPECFVS PRCAKKHKSK QXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000217289/1-677 MDMNPECFVS PRCAKRHKSK QLAARILEAH QNVAQMPLVE AKLRFIQAWQ ENSBTAP00000027271/1-677 MDMNPECFVS PRCAKKHKSK QLAACILEAH QNVAQMPLVE AKLRFIQAWQ bmy_14743T0/1-611 MDMNPECFVS PRCAKKYKSK QLAARILEAH QNVAQMPLVE AKLRFIQAWQ BACU014772/1-898 MDMNPECFVS PRCAKKHKSK QLAARILEAH QNVAQMPLVE AKLRFIQAWQ 801 850 ENSTTRP00000012258/1-677 XXXXXXXXXX XXXFKGSKKD DILGVSYNRL IRIDAATGIP ITTWRFTNMK ENSP00000217289/1-677 SLPEFGLTYY LVRFKGSKKD DILGVSYNRL IKIDAATGIP VTTWRFTNIK ENSBTAP00000027271/1-677 SLPEFGLTYY LVRFKGSKKD DILGISYNRL IRIDAATGIP ITTWRFTNMK bmy_14743T0/1-611 SLPEFGLTYY LVRFKGSKKD DILGVSYNRL IRIDATTGIP VTTWRFTNMK BACU014772/1-898 SLPEFGLTYY LVRFKGSKKD DILGVSYNRL IRIDATTGIP ITTWRFTNMK 851 900 ENSTTRP00000012258/1-677 QWNVNWEIRQ VAIEFDQNVS IAFTCLSADC KVVHEYIGGY IFLSTRSKDQ ENSP00000217289/1-677 QWNVNWETRQ VVIEFDQNVF TAFTCLSADC KIVHEYIGGY IFLSTRSKDQ ENSBTAP00000027271/1-677 QWNVNWEIRQ VAIEFDQNVS IAFTCLSADC KVVHEYIGGY IFLSTRSKDQ bmy_14743T0/1-611 QWNVNWEIRQ VAIEFDQNVS IAFTCLSADC KVVHEYIGGY IFLSTRSKDQ BACU014772/1-898 QWNVNWEIRQ VAIEFDQNVS IAFTCLSADC KVVHEYIGGY IFLSTRSKDQ 901 950 ENSTTRP00000012258/1-677 NETLDEDLFH KLTGGQE ENSP00000217289/1-677 NETLDEDLFH KLTGGQD ENSBTAP00000027271/1-677 NETLDEDLFH KLTGGQE bmy_14743T0/1-611 NETLDEDLFH KLTGGQE BACU014772/1-898 NETLDEDLFH KLTGGQE