KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:32:06 2014 Check: 00 .. Name: ENSTTRP00000008841/1-448 Len: 563 Check: 215 Weight: 1.00 Name: ENSP00000216484/1-562 Len: 563 Check: 4948 Weight: 1.00 Name: ENSBTAP00000027289/1-562 Len: 563 Check: 5488 Weight: 1.00 Name: bmy_03483T0/1-354 Len: 563 Check: 5870 Weight: 1.00 Name: BACU010848/1-418 Len: 563 Check: 1109 Weight: 1.00 // 1 50 ENSTTRP00000008841/1-448 MRTELGGCCC -RRPVRATDC VANGEVRNGY VRIS---ATA AAAGXIHHVT ENSP00000216484/1-562 MRPEPGGCCC -RRTVRANGC VANGEVRNGY VRSSAAAAAA AAAGQIHHVT ENSBTAP00000027289/1-562 MRPDPGGCCC RRRPVRANSC VANGEVRNGY VRSS-AAAAA AAAGQIHHVT bmy_03483T0/1-354 ---------- ---------- ---------- ---------- -----MQQKE BACU010848/1-418 MRTEPGGCCC -RRPVRANDC VANGEVRNGY VRSS-AATAA AAASQIHHVT 51 100 ENSTTRP00000008841/1-448 QNGGLYKRPF NEGFEETPML VAVLTYVGYG VLTLFGYLRD FLRHWRIEKC ENSP00000216484/1-562 QNGGLYKRPF NEAFEETPML VAVLTYVGYG VLTLFGYLRD FLRYWRIEKC ENSBTAP00000027289/1-562 ENGGLYKRPF NEGFEETPML VAVLTYVGYG VLTLFGYLRD FLRHWRIEKC bmy_03483T0/1-354 KNKSIF---- ---------- ---------- --TIF----- ----W----- BACU010848/1-418 QNGGLYKRPF NEGFEETPML VAVLTYVGYG VLTLFGYLRD FLRHWRIEKC 101 150 ENSTTRP00000008841/1-448 HHATEREEQK XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000216484/1-562 HHATEREEQK DFVSLYQDFE NFYTRNLYMR IRDNWNRPIC SVPGARVDIM ENSBTAP00000027289/1-562 HHATEREEQK DFVSLYQDFE NFYTRNLYMR IRDNWNRPIC SVPGARVDIM bmy_03483T0/1-354 ---------Q DFVSLYQDFE NFYTRNLYMR IRDNWNRPIC SVPGARVDIM BACU010848/1-418 HHATEREEQK DFVSLYQDFE NFYTRNLYMR IRDNWNRPIC SVPGARVDIM 151 200 ENSTTRP00000008841/1-448 XXXXXXXXXX XXYTGNVIKD VINMGSYNYL GFARNTGPCQ EAAAKVLEEY ENSP00000216484/1-562 ERQSHDYNWS FKYTGNIIKG VINMGSYNYL GFARNTGSCQ EAAAKVLEEY ENSBTAP00000027289/1-562 ERQSHDYNWS FKYTGNVIKD VINMGSYNYL GFARNTGPCQ EAAAKVLEEY bmy_03483T0/1-354 ERQSHDYNWS FKYTGNVIKD VINMGSYNYL GFARNTGPCQ EAAAKVLEEY BACU010848/1-418 ERQSHDYNWS FKYTGNVIKD VINMGSYNYL GFARNTGPCQ EAAAKVLEEY 201 250 ENSTTRP00000008841/1-448 GVGVCSTRQE IGNLDKHEEL EKLVANFLGV EAAMTYGMGF ATNSMNIPAL ENSP00000216484/1-562 GAGVCSTRQE IGNLDKHEEL EELVARFLGV EAAMAYGMGF ATNSMNIPAL ENSBTAP00000027289/1-562 GVGVCSTRQE IGNLDKHEEL EKLVANFLGV EAAMAYGMGF ATNSMNIPAL bmy_03483T0/1-354 GVGVCSTRQE IGNLDKHEEL EKLVASFLGV EAAMTYGMGF ATNSMNIPAL BACU010848/1-418 GVGVCSTRQE IGNLDKHEEL EKLVASFLGV EAAMTYGMGF ATNSMNIPAL 251 300 ENSTTRP00000008841/1-448 VSKGCLILSD ELNHASLVLG ARLSGATIRV FKHNNMQSLE KLLKDAIVYG ENSP00000216484/1-562 VGKGCLILSD ELNHASLVLG ARLSGATIRI FKHNNMQSLE KLLKDAIVYG ENSBTAP00000027289/1-562 VSKGCLILSD ELNHASLVLG ARLSGATIRV FKHNNMQSLE KLLKDAIVYG bmy_03483T0/1-354 VSKGCLILSD ELNHASLVLG ARLSGATIRV FKHNNMQSLE KLLKDAIVYG BACU010848/1-418 VSKEIF---- ---------- ---------- ----NMQSLE KLLKDAIVYG 301 350 ENSTTRP00000008841/1-448 QPRTRRPWKK ILILVEGIYS MEGSIVRLPE VIALKKKYKA YLYLDEAHSI ENSP00000216484/1-562 QPRTRRPWKK ILILVEGIYS MEGSIVRLPE VIALKKKYKA YLYLDEAHSI ENSBTAP00000027289/1-562 QPRTRRPWKK ILILVEGIYS MEGSIVRLPE VIALKKKYKA YLYLDEAHSI bmy_03483T0/1-354 QPRTRRPWKK ILILVEGIYS MEGSIVRLPE VIALKKKYKA YLYLDEAHSI BACU010848/1-418 QPRTRRPWKK ILILVEGIYS MEGSIVRLPE VIALKKKYKA YLYLDEAHSI 351 400 ENSTTRP00000008841/1-448 GALGPTGRGV VDYFGLDPED VDIMMGTFTK SFGAAGGYIG GKKELIDYLR ENSP00000216484/1-562 GALGPTGRGV VEYFGLDPED VDVMMGTFTK SFGASGGYIG GKKELIDYLR ENSBTAP00000027289/1-562 GALGPTGRGV VDYFGLDPED VDIMMGTFTK SFGASGGYIG GKKALIDYLR bmy_03483T0/1-354 GALGPTGRGV VDYFGLDPED VDIMMGTFTK SFGASGGYIG GKKELIDYLR BACU010848/1-418 GALGPTGRGV VDYFGLDPED VDIMMGTFTK SFGASGGYIG GKKELIDYLR 401 450 ENSTTRP00000008841/1-448 THSHSAVYAT SLSPPVVEQI ITSMKCITGQ DGTTLGKECI QQLAENVRYF ENSP00000216484/1-562 THSHSAVYAT SLSPPVVEQI ITSMKCIMGQ DGTSLGKECV QQLAENTRYF ENSBTAP00000027289/1-562 THSHSAVYAA SLSPPVAEQI ITAMKCIMGQ DGTTLGKECI QQLAENVRYF bmy_03483T0/1-354 THSHSAVYAT SLSPPVVEQI ITSMKCIMGQ DGTTLGKS-- --------FF BACU010848/1-418 THSHSAVYAT SPSPPVVEQI VTSMKCIMGQ DGTTLGKS-- --------FS 451 500 ENSTTRP00000008841/1-448 RR-------- ---------- ---------- ---------- ---------- ENSP00000216484/1-562 RRRLKEMGFI IYGNEDSPVV PLMLYMPAKI GAFGREMLKR NIGVVVVGFP ENSBTAP00000027289/1-562 RRRLKSMGFI IYGNEDSPVV PLMLYMPAKI GAFGREMLKR NIGVVVVGFP bmy_03483T0/1-354 SWKI------ ---------- ---------- ---------- ---------- BACU010848/1-418 SWKI------ ---------- ---------- ---------- ---------- 501 550 ENSTTRP00000008841/1-448 ---------- ---------- ---------- ---------- ---------- ENSP00000216484/1-562 ATPIIESRAR FCLSAAHTKE ILDTALKEID EVGDLLQLKY SRHRLVPLLD ENSBTAP00000027289/1-562 ATPIIESRAR FCLSAAHTRE TLDTALKEID EVGDLLHLKY SRHRSVPLLD bmy_03483T0/1-354 ---------- ---------- ---------- ---------- ---------- BACU010848/1-418 ---------- ---------- ---------- ---------- ---------- 551 600 ENSTTRP00000008841/1-448 ---------- --- ENSP00000216484/1-562 RPFDETTYEE TED ENSBTAP00000027289/1-562 RPFDETTYEE TED bmy_03483T0/1-354 ------SWAQ --- BACU010848/1-418 ------SWAQ ---