KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:32:10 2014 Check: 00 .. Name: ENSP00000265007/1-753 Len: 767 Check: 3906 Weight: 1.00 Name: ENSBTAP00000027304/1-766 Len: 767 Check: 4160 Weight: 1.00 Name: ENSTTRP00000012320/1-428 Len: 767 Check: 6577 Weight: 1.00 Name: bmy_14760T0/1-765 Len: 767 Check: 8754 Weight: 1.00 Name: BACU000781/1-562 Len: 767 Check: 3040 Weight: 1.00 // 1 50 ENSP00000265007/1-753 MERARPEPPP Q--------- PRPLRPAPPP LPVEGTSFWA AAMEPPPSSP ENSBTAP00000027304/1-766 MERARPEQPP QQRQLPRATP PRPLRPAPPP LPVEGASFRA AATEPSPSPP ENSTTRP00000012320/1-428 ---------- ---------- ---------- ---------- ---------- bmy_14760T0/1-765 MERARPEPPP QPRQLTRATP RRPLRPAPPP LPVEGASFRA AAAEPSASPP BACU000781/1-562 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000265007/1-753 TLSAAASATL ASSCGEAVAS GLQPAVRRLL QVKPEQVLLL PQ----PQAQ ENSBTAP00000027304/1-766 TPCAAAIATV ASSCGEPSAS GVQPAARRLL QVKPEQVLLL PPGPPLPQAR ENSTTRP00000012320/1-428 ---------- ---------- ---------- ---------- ---------- bmy_14760T0/1-765 TPCAAAIATV ASSCGEATAS GVQPAARRVL QVNPEQVLLL PPGPPLPQAR BACU000781/1-562 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000265007/1-753 NEEAAASSAQ ARLLQFRPDL RLL-QPPTAS DGATSRPELH PVQPLALHVK ENSBTAP00000027304/1-766 EESAATSPAQ ARLLQLRPEL LLLPPPPPAS EGIPCRPELH PLQPRALHVK ENSTTRP00000012320/1-428 ---------- ---------- ---------- ---------- ---------- bmy_14760T0/1-765 EEGAAASPAQ ARLLQLRPEL LLL--PPPSS EGAPCRPQLH PVQPWPLHVK BACU000781/1-562 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000265007/1-753 AKKQKLGPSL DQSVGPRGAV ETGPRASRVV KLEGPGPALG YFRGDEKGKL ENSBTAP00000027304/1-766 AEKQEPGPGL DLLAGPRRAV EACPKTSRTV KAEGSGPLNS RRGEEKKGKL ENSTTRP00000012320/1-428 ---------- ---------- ---------- ---------- ---------- bmy_14760T0/1-765 AEKQEPDPSL DPSVGPRRAV KAGPKASRAA KTGGPGPALD SPRGDEKGKL BACU000781/1-562 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000265007/1-753 EAEEVMRDSM QGGAGKSPAA IREGVIKTEE PERLLEDCRL GAEPASNGLV ENSBTAP00000027304/1-766 EAEEIVSYAA KGEEGKSLAV LREGVIKTEA PERLREDCRL STEPASNGLA ENSTTRP00000012320/1-428 ---------- ---------- ---------- ---------- ---------- bmy_14760T0/1-765 EEEEVMSYTA KGEEGKSLAA IREGVIKTEE PERLREDSRL GTEPASSGLV BACU000781/1-562 -----MSYTA KGGEGKSLAA IREGVIKTEE PERLREDYRL GTEPASSGLI 251 300 ENSP00000265007/1-753 HGSAEVILAP TSGAFGPHQQ DLRIPLTLHT VPPGARIQFQ GAPPSELIRL ENSBTAP00000027304/1-766 HGNKDVILTQ PSSAFGPHQQ DLRIPLTLHT VPPGARIQFQ GPPPSELIRL ENSTTRP00000012320/1-428 ---------- ---------- ---------- ---------- ---------- bmy_14760T0/1-765 HGSKDVILTQ PSSAFGPHQQ DLRIPLTLHT VPPGARIQFQ GPXPSELIRL BACU000781/1-562 HGSKDVTLTQ PSSAFGPHQQ DLRIPLTLHT VPPGALIQFQ GPPPSELIRL 301 350 ENSP00000265007/1-753 TKVPLTPVPT KMQSLLEPSV KIETKDVPLT VLPSDAGIPD TPFSKDRNGH ENSBTAP00000027304/1-766 TKVPLTPVPI KMQSLLEPSV KIETKDVPLT VLPSDAGIPD TPFSKDRNGH ENSTTRP00000012320/1-428 ---------- ---------- ---------- -------IPD TPFSKDRNGH bmy_14760T0/1-765 TKVPLTPVPI KMQSLLEPSV KIETKDVPLT VLPSDAGIPD TPFSKDRNGH BACU000781/1-562 TKVPLTPVPI KMQSLLEPSV KIETKDVPLT VLPSDAGIPD TPFSKDRNGH 351 400 ENSP00000265007/1-753 VKRPMNAFMV WARIHRPALA KANPAANNAE ISVQLGLEWN KLSEEQKKPY ENSBTAP00000027304/1-766 VKRPMNAFMV WARIHRPALA KANPAANNAE ISVQLGLEWN KLSEEQKKPY ENSTTRP00000012320/1-428 VKRPMNAFMV WARIHRPALA KANPAANNAE ISVQLGLEWN KLSEEQKKPY bmy_14760T0/1-765 VKRPMNAFMV WARIHRPALA KANPAANNAE ISVQLGLEWN KLSEEQKKPY BACU000781/1-562 VKRPMNAFMV WARIHRPALA KANPAANNAE ISVQLGLEWN KLSEEQKKPY 401 450 ENSP00000265007/1-753 YDEAQKIKEK HREEFPGWVY QPRPGKRKRF PLSVSNVFSG TTQNIISTNP ENSBTAP00000027304/1-766 YDEAQKIKEK HREEFPGWVY QPRPGKRKRF PLSVSSVFSG TTQNIISTNP ENSTTRP00000012320/1-428 YDEAQKIKEK HREEFPGWIY QPRPGKRKRF PLSVSNVLSG TTQNIISTNS bmy_14760T0/1-765 YDEAQKIKEK HREEFPGWVY QPRPGKRKRF PLSVSNVLSG TTQNIISTNP BACU000781/1-562 YDEAQKIKEK HREEFPGWVY QPRPGKRKRF PLSVSNVLSG TTQNIISTNP 451 500 ENSP00000265007/1-753 TTVYPYRSPT YSVVIPSLQN PITHPVGETS PAIQLPTPAV QSPSPVTLFQ ENSBTAP00000027304/1-766 -TIYPYRSPT YSVVIPSLQN AITHPVGESP PTIQLPTPAV QRPSPITLFQ ENSTTRP00000012320/1-428 TTVYPYCSPT YSVVIPSLQN PITHSVDEAP PAIPLPTPAV QRPSPITVFQ bmy_14760T0/1-765 TTIYPCCSPT YSVVIPSLQN TITHSVGEAL PAIQLPPPAV QCPSPITLFQ BACU000781/1-562 TTIYPCCSPT YSVVIPSLQN TITHSVGEAL PAIQLPPPAV QCPSPITLFQ 501 550 ENSP00000265007/1-753 PSVSSAAQVA VQDPSLPVYP ALPPQRFTGP SQTDTHQLHS EATHTVKQPT ENSBTAP00000027304/1-766 PSVSSTAQVA VQAPSLPLRP ALPPQRFAGP SQADTHQLHS GVSRSVKRPT ENSTTRP00000012320/1-428 PSISSTAQVA VQAPSLPLCP PLLPQCFAGP SETDTHQLHS GASHSVKRPT bmy_14760T0/1-765 PSISSTAQVA VQAPSLPLCP PLPPQCFAGP SQMDTHQLHS GASCSVKRPT BACU000781/1-562 PSISSTAQVA VQAPSLPLCP PLPPQCFAGP SQMDTHQLHS GASCSVKRPT 551 600 ENSP00000265007/1-753 PVSLESANRI SSSASTAHAR FATSTIQPPR EYSSVSPCPR SAPIPQASPI ENSBTAP00000027304/1-766 PVSLESTNRI PTSASPAHSR FATSTIQPPK EYPSVSTCPR STPISQAPPI ENSTTRP00000012320/1-428 PVFLESTSRI PTSASTAHAR FAASTIQPPE EYPSISTCPR SAPIPQAPPI bmy_14760T0/1-765 PVSLESTSRI PTSASTAHAR FAASTIQPPK GYPSLSTCPR SAPIPQSPPI BACU000781/1-562 PVSLESTSRI PTSANTAHAR FAASTIQPPK EYPSLSTCPR SAPIPQAPPI 601 650 ENSP00000265007/1-753 PHPHVYQPPP LGHPATLFGT PPRFSFHHPY FLPGPHYFPS STCPYSRPPF ENSBTAP00000027304/1-766 PHSHIYQPSP LGHPAALFGT PPRFSFHHPY FLPGPHYFPS STCPYSRPPF ENSTTRP00000012320/1-428 PHSHVCQPPP LGHAATLFGT PPRFAFHHPY FLPGPHYFPS STCPYSRPPF bmy_14760T0/1-765 PHSHVCQPPP LGHAATLFGT PPRFSFHHPY FLPGPHYFPS STCPYSRPPF BACU000781/1-562 PHSHVCQPPP LGHAATLFGT PPRFSFHHPY FLPGPHYFPS STCPYSRPPF 651 700 ENSP00000265007/1-753 GYGNFPSSMP ECLSYYEDRY PKHEGIFSTL NRDYSFRDYS SECTHSENSR ENSBTAP00000027304/1-766 GYGNFPSSMP ECLGYYEDRY QKHEAMFSAL NRDYPFRDYP DERAHNEDSR ENSTTRP00000012320/1-428 GYGNFPSAVP ECLGYYEDRC QNHEAMFSAL NRDYPYGDYP DERAHSEDFW bmy_14760T0/1-765 GYGNFPSSVP ECLGYYEDRY QKHEAMFSAL NRDYPFRDYP DERAHSEDSR BACU000781/1-562 GYGNFPSSVP ECLGYYEDRY QKHETMFSAL NRDYLFRDYP DERAHGEDSR 701 750 ENSP00000265007/1-753 SCENMNGTSY YNSHSHSGEE NLNPVPQLDI GTLENVFTAP TSTPSSIQQV ENSBTAP00000027304/1-766 SCENMDGTSY YNSHCHSGEE YLNPIPQLDI GALENVFTAP TSTPSSIQQV ENSTTRP00000012320/1-428 SCESMDGTSY CNSHSHSGEE YLNLVPQLDT GALESVFTAP TSTPSNIQQV bmy_14760T0/1-765 SCESVDGTSY CNSHIHSGEE YLNPVPQLDT GALESVFTAP TSTPSNIQQV BACU000781/1-562 SCESMDGTCY CNSHSRSGEE YLNPVPQLDP GALESVFTAP TSIPSNIQQV 751 800 ENSP00000265007/1-753 NVTDSDEEEE EKVLRDL ENSBTAP00000027304/1-766 NVTDSDEEEE EKVLRNL ENSTTRP00000012320/1-428 NVTDSDDEEE EKVLK-- bmy_14760T0/1-765 NVTDSDEEEE EKVLRNL BACU000781/1-562 NVTDSDEEEE EKVLRNL