KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:32:14 2014 Check: 00 .. Name: ENSTTRP00000006351/1-727 Len: 987 Check: 3948 Weight: 1.00 Name: ENSP00000265978/1-986 Len: 987 Check: 5048 Weight: 1.00 Name: ENSBTAP00000027334/1-789 Len: 987 Check: 9995 Weight: 1.00 Name: bmy_13083T0/1-986 Len: 987 Check: 5522 Weight: 1.00 Name: BACU004501/1-858 Len: 987 Check: 2557 Weight: 1.00 // 1 50 ENSTTRP00000006351/1-727 ---------- ---------- ---------- ---------- ---------- ENSP00000265978/1-986 MERMNWLSRL ASRGPGHRIP QGANLQTPVM ADPETCLMVF KNHWSQVVRI ENSBTAP00000027334/1-789 ---------- ---------- ---------- ---------- ---------- bmy_13083T0/1-986 MERMNWLSRL ASRGPGHRVP QGASLQTPVM ADPETCLMVF KNHWSQVVRI BACU004501/1-858 MERMNWLSRL ASRGPGHRVP QGASLQTPVM ADPETCLMVF KNHWSQVVRI 51 100 ENSTTRP00000006351/1-727 ---------- ---------- ---------- ---------- ---------- ENSP00000265978/1-986 LERQGPRAAP GGADDLSAVR NHTYQMLTLL AEDRAVPSAP TGPGPLLEFA ENSBTAP00000027334/1-789 ---------- ---------- ---------- ---------- ---------- bmy_13083T0/1-986 LERQGPRAAP GGADDLSAVC NHTYQMLTLL AEDRAVPSAP TAPGPLLEFA BACU004501/1-858 LERQGPRAAP GGADDLSAVC NHTYQMLTLL AEDRAVPSAP TAPGPLLEFA 101 150 ENSTTRP00000006351/1-727 ---------- ---------- ---------- ---------- ---------- ENSP00000265978/1-986 LHEDLLTRVL TWQLQWDELG DGVEERRAEQ LKLFEMLVSE ARQPLLRHGP ENSBTAP00000027334/1-789 --------XL TWQLQWDELG DGVEERRAEQ LKLFEMLVSE ARQPLLRHGP bmy_13083T0/1-986 LREDLLTRVL TWQLQWDELG DGVEERRAEQ LKLFEMLVSE ARQPLLRHSP BACU004501/1-858 LREDLLTRVL TWQLQWDELG DGVEERRAEQ LKLFEMLVSE ARQPLLRHSP 151 200 ENSTTRP00000006351/1-727 ---------- ---------- ---------- ---------- ---------- ENSP00000265978/1-986 VREALLTLLD ACGRPVPSSP ALDEGLVLLL SQLCVCVAQE PSLLEFFLQP ENSBTAP00000027334/1-789 VREALLILLD ACGRPVPSSP ALDEGLVLLL SQLCVCLARE PSLLEFFLQP bmy_13083T0/1-986 VREALLILLD ACGRPVPSSP ALDEGLVLLL SQLCVCLARE PSLLEFFLQP BACU004501/1-858 VREALLILLD ACGRPVPSSP ALDEGLVLLL SQLCVCLARE PSLLEFFLQP 201 250 ENSTTRP00000006351/1-727 ---------- ---------- ---------- ---------- ---------- ENSP00000265978/1-986 PPEPGAAPRL LLFSRLVPFV HREGTLGQQA RDALLLLMAL SAGSPTVGRY ENSBTAP00000027334/1-789 PPEPGAAPRL LLFSRLVPFV HREGTLGQQA RDALLLLMAL SAGSPTVGCY bmy_13083T0/1-986 PPEPGAAPRL LLFSRLVPFV HREGTLGQQA RDALLLLMAL SAGSPTVGRY BACU004501/1-858 PPEPGAAPRL LLFSRLVPFV HREGTLGQQA RDALLLLMAL SAGSPTVGRY 251 300 ENSTTRP00000006351/1-727 ---------V LATGLSALYS SLPRKIEVPG DDWHCLRRED WLGVPALALF ENSP00000265978/1-986 IADHSYFCPV LATGLSALYS SLPRKIEVPG DDWHCLRRED WLGVPALALF ENSBTAP00000027334/1-789 IADHSYFCPV LATGLSALYS SLPRKIEVPG DDWHCLRRED WLGVPALALF bmy_13083T0/1-986 IADHSYFCPV LATGLSALYS SLPRKIEVPG DDWHCLRRED WLGVPALALF BACU004501/1-858 IADHSYFCPV LATGLSALYS SLPRKIEVPG DDWHCLRRED WLGVPALALF 301 350 ENSTTRP00000006351/1-727 MSSLEFCNAV IQVAHPLVQK QLVDYIHNGF LVPVMGPALH KTSVEEMIAS ENSP00000265978/1-986 MSSLEFCNAV IQVAHPLVQK QLVDYIHNGF LVPVMGPALH KTSVEEMIAS ENSBTAP00000027334/1-789 MSSLEFCNAV IQVAHPLVQK QLVDYIHNGF LVPVMGPALH KTSVEEMIAS bmy_13083T0/1-986 MSSLEFCNAV IQVAHPLVQK QLVDYIHNGF LVPVMGPALH KTSVEEMIAS BACU004501/1-858 MSSLEFCNAV IQVAHPLVQK QLVDYIHNGF LVPVMGPALH KTSVEEMIAS 351 400 ENSTTRP00000006351/1-727 TAYLELFLRS ISEPALLRTF LRSXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000265978/1-986 TAYLELFLRS ISEPALLRTF LRFLLLHRHD THTILDTLVA RIGSNSRLCM ENSBTAP00000027334/1-789 TAYLELFLRS ISEPALLRTF LRFLLLHRHD THTILDTLVA RIGSNSRLCM bmy_13083T0/1-986 TAYLELFLRS ISEPALLRTF LRFLLLHRHD THTILDTLVA RIGSNSRLCM BACU004501/1-858 TAYLELFLRS ISEPALLRTF LRFLLLHRHD THTILDTLVA RIGSNSRLCM 401 450 ENSTTRP00000006351/1-727 XXXXXXXXXX XXXXXXXXXX XXXXYLVPCN HVMLSQKPAV RDVDLYGRAA ENSP00000265978/1-986 VSLSLFRTLL NLSCEDVLLQ LVLRYLVPCN HVMLSQKPAV RDVDLYGRAA ENSBTAP00000027334/1-789 VSLSLFRTLL NLSCEDVLLQ LVLRYLVPCN HVMLSQKPAV RDVDLYGRAA bmy_13083T0/1-986 VSLSLFRTLL NLSCEDVLLQ LVLRYLVPCN HVMLSQKPAV RDVDLYGRAA BACU004501/1-858 VSLSLFRTLL NLSCEDVLLQ LVLRYLVPCN HVMLSQKPAV RDVDLYGRAA 451 500 ENSTTRP00000006351/1-727 DKFLSLIPCC CRHRASSPPR PEHASWARGG PSREAGRRED TTGPGSPSVD ENSP00000265978/1-986 DKFLSLIPRC CRHHAPSPPR PEHASWARGG PSRETGRRED ITGPGSPSVD ENSBTAP00000027334/1-789 DKFLSLIPRC CRHHASSPSR PEHASWAR-- ---------- --GPGSPSVD bmy_13083T0/1-986 DKFLSLIPRC CRHRASSPPR PEHASWARGG PSREAGRRED TTGPGSPSVD BACU004501/1-858 DKFLSLIPRC CRHRASSPPR PEHASWAR-- ---------- --GPGSPSVD 501 550 ENSTTRP00000006351/1-727 SSSVVTVPRA STPSRLALFL RQQSLGGSES PAPAPRSPGL AASPASSPGR ENSP00000265978/1-986 SSSVTTVPRP STPSRLALFL RQQSLGGSES PGPAPCSPGL SASPASSPGR ENSBTAP00000027334/1-789 SSSVVTVHRP STPSRLALFL RQQSLGGSES PAPAPHSPGL ATSPASSPGR bmy_13083T0/1-986 SSSVVTVPRA STPSRLALFL RQQSLGGSES PAPAPRSPGL AASPASSPGR BACU004501/1-858 SSSVVTVPRA STPSRLALFL RQQSLGGSES PAPAPRSPGL AASPASSPGR 551 600 ENSTTRP00000006351/1-727 RPSPVEEPGE LEDNYLEYLR EARLGVDRCV QACRTWSAPY DGERPPPEPS ENSP00000265978/1-986 RPTPAEEPGE LEDNYLEYLR EARRGVDRCV RACRTWSAPY DGERPSPEPS ENSBTAP00000027334/1-789 RPSPVEEPGE LEDNYLEYLR EARRGVDRCV QACRTWSAPY DGERPPPEPS bmy_13083T0/1-986 RPSPVEEPGE LEDNYLEYLR EARLGVDRCV QACRTWSAPY DGERPPPEPS BACU004501/1-858 RPSPVEEPGE LEDNYLEYLR EARLGVDRCV QACRTWSAPY DGERPPPEPS 601 650 ENSTTRP00000006351/1-727 PVGSRTKKRS LLPEEGRGHA GEGEVEELGR GALALGVREG PGHLRPPQLN ENSP00000265978/1-986 PFGSRTKKRS LLPEEDRNNV GEGEEEELGR RGRAGGAGEG PGHLPPPQLN ENSBTAP00000027334/1-789 PVGSRTKKRS LLPEEGRDNA GGGEEEELGS GGLAGGARES LGHLPPPQLN bmy_13083T0/1-986 PVGSRTKKRS LLPEEDRDNA GEGEAEELGR GALALGAREG PGHLPPPQLN BACU004501/1-858 PVGSRTKKRS LLPEEDRDNA GEGEAEELGR GAQALGAREG PGHLPPPQLN 651 700 ENSTTRP00000006351/1-727 GVPGPWPEGA KKVRRVPQEG AGELLEGTSE GVAGLESFGQ ELRELEVALS ENSP00000265978/1-986 GVPGSWPEGA KKVRLVPKEG AGELLEGISE GMAGLEGFGQ ELRELEVALS ENSBTAP00000027334/1-789 GLPGPWPEGA KKVRRVPKEG AGEPLEDTSE GMAGLEGFGQ ELRELEVALS bmy_13083T0/1-986 GVPGPWPEGA KKVRRVPQEG AGELLEGTSE GVAGLESFGQ ELRELEVALS BACU004501/1-858 GVPGPWPEGA KKVRRVPQEG AGELLEGTSE GVAGLESFGQ ELRELEVALS 701 750 ENSTTRP00000006351/1-727 NGGAGSEPPL EPSLPLEEEE AYESFTCAPE PPGPFLSSPL RTLSQLPSQP ENSP00000265978/1-986 NGGTGSESPL EPPLPLEEEE AYESFTCPPE PPGPFLSSPL RTLNQLPSQP ENSBTAP00000027334/1-789 NGGAGSEPPL EPSLPLEEEE AYESFTCSPE PPGPFLSSPL RTLNQLPSQP bmy_13083T0/1-986 NGGAGSEPPL EPSLPLEEEE AYESFTCPPE PPGPFLSSPL RTLNQLPSQP BACU004501/1-858 NGGAGSEPPL EPSLPLEEEE AYESFTCPPE PPGPFLSSPL RTLNQLPSQP 751 800 ENSTTRP00000006351/1-727 FTGPFMAVLF AKLENMLQNS VYVNFLLTGL VAQLACHPQP LLRSFLLNTN ENSP00000265978/1-986 FTGPFMAVLF AKLENMLQNS VYVNFLLTGL VAQLACHPQP LLRSFLLNTN ENSBTAP00000027334/1-789 FTGPFMAVLF AKLENMLQNS VYVNFLLTGL VAQLACHPQP LLRSFLLNTN bmy_13083T0/1-986 FTGPFMAVLF AKLENMLQNS VYVNFLLTGL VAQLACHPQP LLRSFLLNTN BACU004501/1-858 FT-------- ---------- ---------- ---------- ---------- 801 850 ENSTTRP00000006351/1-727 MVFQPSVKSL LQVLGSVKNK IESFAASQED FPALLSKAKK YLIARGKLDW ENSP00000265978/1-986 MVFQPSVKSL LQVLGSVKNK IENFAASQED FPALLSKAKK YLIARGKLDW ENSBTAP00000027334/1-789 MVFQPSVKSL LQVLGSVKNK IESFAASQED FPALLSKAKK YLIARGKLDW bmy_13083T0/1-986 MVFQPSVKSL LQVLGSVKNK IESFAASQED FPALLSKAKK YLIARGKLDW BACU004501/1-858 ---------- ---------- ---------- ---------- ---------- 851 900 ENSTTRP00000006351/1-727 TEGPAAGSAP RRSDSLVKSR RPSLGELLLR HAHSPTRARQ AAQMVLQPGR ENSP00000265978/1-986 AEGPAAGPAP RRSDPLVKSR RPSLGELLLR HAHSPTRARQ AAQLVLQPGR ENSBTAP00000027334/1-789 TEGPAAGPAP RRSDSLVKSR RPSLGELLLR HAHSPTRARQ AAQMVLQPGR bmy_13083T0/1-986 TEGPAAGSAP RRSDSLVKSR RPSLGELLLR HAHSPTRARQ AAQMALQPGR BACU004501/1-858 ---------- ------VKSR RPSLGELLLR HAHSPTRARQ AAQMVLQPGR 901 950 ENSTTRP00000006351/1-727 D-GTGLGLGG GSPGASTPVL PPRGGAPDRQ GEALRVKNAV YCAVIFPEFL ENSP00000265978/1-986 D-GAGLGLSG GSPGASTPVL LTRGGAPERQ GEALRVKNAV YCAVIFPEFL ENSBTAP00000027334/1-789 DGGADVGAGG G--------- ---------- ---------- ---------- bmy_13083T0/1-986 D-GTGLGLGG GSPGASTPVL PPRGGAPDRQ GEALRVKNAV YCAVIFPEFL BACU004501/1-858 D-GTGLGLGG GSPGASTPVL PPRGGAPDRQ GEALRVKNAV YCAVIFPEFL 951 1000 ENSTTRP00000006351/1-727 KELAAISQAH AVTSPFLLDT SEEGSGPPIS GFGPLNP ENSP00000265978/1-986 KELAAISQAH AVTSPFLLET SEEGSGPLIS GCGPLNP ENSBTAP00000027334/1-789 ---------- ---------- ---------- ------- bmy_13083T0/1-986 KELAAISQAH AVTSPFLLDT SEEGSGPPIS GFGPLNP BACU004501/1-858 KELAAISQAH AVTSPFLLDT SEEGSGPPIS GFGPLNP