KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:32:15 2014 Check: 00 .. Name: ENSTTRP00000007248/1-1194 Len: 1253 Check: 7316 Weight: 1.00 Name: ENSP00000378721/1-1220 Len: 1253 Check: 2875 Weight: 1.00 Name: ENSBTAP00000027346/1-1160 Len: 1253 Check: 1518 Weight: 1.00 Name: BACU002015/1-1107 Len: 1253 Check: 6525 Weight: 1.00 Name: bmy_20589T0/1-934 Len: 1253 Check: 1614 Weight: 1.00 // 1 50 ENSTTRP00000007248/1-1194 ---------- ---------- -------TSA QQLDATFSTS ASLEIFELDL ENSP00000378721/1-1220 MKLKEVDRTA MQAWSPAQNH PIYLATGTSA QQLDATFSTN ASLEIFELDL ENSBTAP00000027346/1-1160 MKLKEVDRTA MQAWSPAQNH PIYLATGTSA QQLDATFSTS ASLEIFELDL BACU002015/1-1107 MKLKEIDRTA MQAWSPAQNH PIYLATGTSA QQLDATFSTS ASLEIFELDL bmy_20589T0/1-934 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000007248/1-1194 SDPSLDMKSC ATFSSSHRYH KLIWGPHKMD SKGDVSGVLI AGGENGNIIL ENSP00000378721/1-1220 SDPSLDMKSC ATFSSSHRYH KLIWGPYKMD SKGDVSGVLI AGGENGNIIL ENSBTAP00000027346/1-1160 SDPSLDMKSC ATFSSSHRYH KLIWGPHKMD SKGNISGVLI AGGENGNIIL BACU002015/1-1107 SDPSLDMKSC ATFSSSHRYH KLIWGPHKMD SKGDVSGVLI AGGENGNIIL bmy_20589T0/1-934 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000007248/1-1194 YDPSKIIAGD KEVVIAQNDK HTGPVRALDV NIFQTNLVAS GANESEIYIW ENSP00000378721/1-1220 YDPSKIIAGD KEVVIAQNDK HTGPVRALDV NIFQTNLVAS GANESEIYIW ENSBTAP00000027346/1-1160 YDPSKIIAGD KEVVIAQNDK HTGPVRALDV NIFQVRLLTL GVNESEHYLS BACU002015/1-1107 YDPSKIIAGD KEVVIAQNDK HTGPVRALDV NIFQTNLVAS GANESEIYIW bmy_20589T0/1-934 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000007248/1-1194 DLNNFATPMT PGAKTQPPED ISCIAWNRQV QHILASANPS GRATVWDLRK ENSP00000378721/1-1220 DLNNFATPMT PGAKTQPPED ISCIAWNRQV QHILASASPS GRATVWDLRK ENSBTAP00000027346/1-1160 NINSFKACIF PQNKVE---- ---------- ---------- ---------- BACU002015/1-1107 DLNNFATPMT PGAKTQPPED ISCIAWNRQV QHILASANPS GRATVWDLRK bmy_20589T0/1-934 ---------- ---------- ---------- ---------- ---------- 201 250 ENSTTRP00000007248/1-1194 NEPIIKVSDH SNRMHCSGLA WHPDVATQMV LASEDDRLPV IQMWDLRFAS ENSP00000378721/1-1220 NEPIIKVSDH SNRMHCSGLA WHPDVATQMV LASEDDRLPV IQMWDLRFAS ENSBTAP00000027346/1-1160 ---------- ---MHCSGLA WHPDVATQMV LASEDDRLPV VQMWDLRFAS BACU002015/1-1107 NEPIIKVSDH SNRMHCSGLA WHPDVATQMV LASEDDRLPV IQMWDLRFAS bmy_20589T0/1-934 ---------- ---------- ---------- ---------- ---------- 251 300 ENSTTRP00000007248/1-1194 SPLRVLENHA RGILAIAWSM ADPELLLSCG KDAKILCSNP NTGEVLYELP ENSP00000378721/1-1220 SPLRVLENHA RGILAIAWSM ADPELLLSCG KDAKILCSNP NTGEVLYELP ENSBTAP00000027346/1-1160 SPLRVLENHA RGILAIAWSM ADPELLLSCG KDAKILCSNP NTGEVLYELP BACU002015/1-1107 SPLRVLENHA RGILAIAWSM ADPELLLSCG KDAKILCSNP NTGEVLYELP bmy_20589T0/1-934 ---------- ---------M ADPELLLSCG KDAKILCSNP NTGEVLYELP 301 350 ENSTTRP00000007248/1-1194 ANTQWCFDIQ WCPRNPAVLS AASFDGRISV YSIMGGSADG LRQKQVDKLS ENSP00000378721/1-1220 TNTQWCFDIQ WCPRNPAVLS AASFDGRISV YSIMGGSTDG LRQKQVDKLS ENSBTAP00000027346/1-1160 TTTQWCFDIQ WCPRNPAVLS AASFDGRISV YSIMGGSTDG LRQKQVDKLS BACU002015/1-1107 TNTQWCFDIQ WCPRNPAVLS AASFDGRISV YSIMGGSIDG LRQKQVDKLS bmy_20589T0/1-934 TNTQWCFDIQ WCPRNPAVLS AASFDGRISV YSIMGGSTDG LRQKQVDKLS 351 400 ENSTTRP00000007248/1-1194 SSFGNLDPFG TGQPLPPLQI PHQTAQHRIV LPLKKPPKWV RRPVGASFSX ENSP00000378721/1-1220 SSFGNLDPFG TGQPLPPLQI PQQTAQHSIV LPLKKPPKWI RRPVGASFSF ENSBTAP00000027346/1-1160 SSFGNLDPFG TGQPLPPLQI PQQTTPQSIV LPLKKPPRWI RRPVGASFSF BACU002015/1-1107 SSFGNLDPFG TGQPLPPLQI PQQTAQHRIV LPLKKPPKWV RRPVGASFSF bmy_20589T0/1-934 SSFGNLDPFG TGQPLPPLQI PQQTAQHRIV LPLKKPPKWV RRPVGASFSF 401 450 ENSTTRP00000007248/1-1194 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000378721/1-1220 GGKLVTFENV RMPSHQGAEQ QQQQHHVFIS QVVTEKEFLS RSDQLQQAVQ ENSBTAP00000027346/1-1160 GGKLVTFANV RTQPHPGAEQ QPQQHHVFIS QVVTEKEFLS RSDQLQQVVQ BACU002015/1-1107 GGKLVTFVNV RTQPQQGAEQ QLQQHHVCIS QVVTEEEFLS RSDQLQQVVQ bmy_20589T0/1-934 GGKLVTFANV RTQPQQGAEQ QLQQHHVCIS QVVTEEEFLS RSDQLQQVVQ 451 500 ENSTTRP00000007248/1-1194 XXXXXXXXXX XXXXXXXXXX XXXXXXXXVN FEDDSRGKYL ELLGYRKEDL ENSP00000378721/1-1220 SQGFINYCQK KIDASQTEFE KNVWSFLKVN FEDDSRGKYL ELLGYRKEDL ENSBTAP00000027346/1-1160 SQGFVSYCQK KIDASQTEFE KNVWSFLKVN FEDDSRGKYL ELLGYRKEDL BACU002015/1-1107 SQGFVSYCQK KIDASQTEFE KNVWSFLKVN FEDDSRGKYL ELLGYRKEDL bmy_20589T0/1-934 SQGFVSYCQK KIDASQTEFE KNVWSFLKVN FEDDSRGKYL ELLGYRKEDL 501 550 ENSTTRP00000007248/1-1194 GKKIASALNK VDGPDVALKD SDQVAQSDGE ESPAAEEQLL GERIKEEKQE ENSP00000378721/1-1220 GKKIALALNK VDGANVALKD SDQVAQSDGE ESPAAEEQLL GEHIKEEKEE ENSBTAP00000027346/1-1160 GKKIALALNK VDGPDVALKD SDQVAQGDGE ESPAAEEQLL GEQIKEEKQE BACU002015/1-1107 GKK------- ------ALKD SDQVAQSDGE ESPAAEEQLL GEGIKEEKQE bmy_20589T0/1-934 GKKIASALNK VDGPDVALKD SDQVAQSDGE ESPAAEEQLL GERIKEEKQE 551 600 ENSTTRP00000007248/1-1194 SEFLPSAGGT FNISISGDID GLITQALLTG NFESAVDLCL HDNRMADAII ENSP00000378721/1-1220 SEFLPSSGGT FNISVSGDID GLITQALLTG NFESAVDLCL HDNRMADAII ENSBTAP00000027346/1-1160 SEFLPAAGGT FNISVSGDID GLITQALLTG NFESAVDLCL HDNRMADAII BACU002015/1-1107 SEFLPSAGGT FNISISGDID GLITQALLTG NFESAVDLCL HDNRMADAII bmy_20589T0/1-934 SEFLPSAGGT FNISISGDID GLITQALLTG NFESAVDLCL HDNRMADAII 601 650 ENSTTRP00000007248/1-1194 LAIAGGQELL ARTQKKYFAK SQSKITRLIT AVVMKNWKEI VESCDLKNWR ENSP00000378721/1-1220 LAIAGGQELL ARTQKKYFAK SQSKITRLIT AVVMKNWKEI VESCDLKNWR ENSBTAP00000027346/1-1160 LAIAGGQELL ARTQKKYFAK SQSKITRLIT AVVMKNWREI VESCDLKNWR BACU002015/1-1107 LAIAGGQELL ARTQKKYFAK SQSKITRLIT AVVMKNWKEI VESCDLKNWR bmy_20589T0/1-934 LAI------- ---------- ---------- AVVMKNWKEI VESCDLKNWR 651 700 ENSTTRP00000007248/1-1194 EALAAVLTYA KPDEFSALCD LLGTRLESEG DSLLQTQACL CYICAGNVEK ENSP00000378721/1-1220 EALAAVLTYA KPDEFSALCD LLGTRLENEG DSLLQTQACL CYICAGNVEK ENSBTAP00000027346/1-1160 EALAAVLTYA KSDEFSALCD LLGTRLESDG DSLLQTQACL CYICAGNVEK BACU002015/1-1107 EALAAVLTYA KPDEFSALCD LLGTRLESEG DSLLQTQACL CYICAGNVEK bmy_20589T0/1-934 EALAAVLTYA KPDEFSALCD LLGTRLESEG DSLLQTQACL CYICAGNVEK 701 750 ENSTTRP00000007248/1-1194 LVACWTKAQD GSNPLSLQDL IEKVVILRKA VQLTQAMDTN TVGVLLAEKM ENSP00000378721/1-1220 LVACWTKAQD GSHPLSLQDL IEKVVILRKA VQLTQAMDTS TVGVLLAAKM ENSBTAP00000027346/1-1160 LIACWTKAQD GSSPLSLQDL IEKVVILRKA VQLTQAMDTN TVGVLLAEKM BACU002015/1-1107 LVACWTKAQD GSNPLSLQDL IEKVVILRKA VQLTQAMDTN TVGVLLAEKM bmy_20589T0/1-934 LVACWTKAQD GSSPLSLQDL IEKVVILRKA VQLTQAMDTN TVGVLLAEKM 751 800 ENSTTRP00000007248/1-1194 SQYANLLAAQ GSIAAALAFL PDNTNQPNIV QLRDRLCRAQ GNPA-GQQES ENSP00000378721/1-1220 SQYANLLAAQ GSIAAALAFL PDNTNQPNIM QLRDRLCRAQ GEPVAG-HES ENSBTAP00000027346/1-1160 SQYANLLAAQ GSIAAALAFL PENTNQPNIV QLRDRLCRAQ GDPIPGPQES BACU002015/1-1107 SQYASLLAAQ GSIAAALAFL PDSTNQPNIV QLRDRLCRAQ GDPAPGQQES bmy_20589T0/1-934 SQYASLLAAQ GSIAAALAFL PDSTNQPNIV QLRDRLCRAQ GDPAPGQQES 801 850 ENSTTRP00000007248/1-1194 PKIPYERQQL PKGRPGPVAG HTQMPRVPAQ QYYPH----- ---------- ENSP00000378721/1-1220 PKIPYEKQQL PKGRPGPVAG HHQMPRVQTQ QYYPH----- ---------- ENSBTAP00000027346/1-1160 PKIPYERHQV PKNRPGPGAG HAQMPRVPAQ QYYPH----- ---------- BACU002015/1-1107 PKVPYERQQL PKGRPGPVAG HTQMPRVPAQ QYYPH----- ---------- bmy_20589T0/1-934 PKIPYERQQL PKGRPGPVAG HTQMPRVPAQ QYYPHVRIAP TVTTWSNKTP 851 900 ENSTTRP00000007248/1-1194 ---------- ------GENP PPPGFIMHGN VNPNVATAQL PTSPGHMHSQ ENSP00000378721/1-1220 ---------- ------GENP PPPGFIMHGN VNPNAA-GQL PTSPGHMHTQ ENSBTAP00000027346/1-1160 ---------- ------GENP PPPGFVMHGN VSPNVAAAQL PTSPAHVHTQ BACU002015/1-1107 ---------- ---------- --------VR IAPTVT---- -TWSNKTPTA bmy_20589T0/1-934 TALPSHPPAA SPSDTQGENP PPPGFIMHGN VNPNVATAQL PTSPGHTHTQ 901 950 ENSTTRP00000007248/1-1194 VPPYPQPQPY QPAQQYSFGT GGSAVYRPQQ PVAPSASNAY PNTPYISSAS ENSP00000378721/1-1220 VPPYPQPQPY QPAQPYPFGT GGSAMYRPQQ PVAPPTSNAY PNTPYISSAS ENSBTAP00000027346/1-1160 VPPYPQPQPY QPAQQYSFGT GGSAMYRPQQ PVAPSTSNAY PNTPYIPSAS BACU002015/1-1107 LPSHP----- -PA------- ---------- -ASPSDTQVY PSL-FLFEQN bmy_20589T0/1-934 VPPYPQPQPY QPAQQYSFGT GGSAVYRPQQ PVAPSVSNAY PNTPYISSAS 951 1000 ENSTTRP00000007248/1-1194 SYSGQSQLYT AQHQASPPTS SSTASFPPPP SSGASFQHGG PGAPPSSSAY ENSP00000378721/1-1220 SYTGQSQLYA AQHQASSPTS SPATSFPPPP SSGASFQHGG PGAPPSSSAY ENSBTAP00000027346/1-1160 SYSGQSQLYP AQHQAPPPTS CPAASFPPPP SSGASFQHGG PGAPSTSSAY BACU002015/1-1107 DSKGKCPLLS V--------- ---------- ---------- ---------- bmy_20589T0/1-934 SYSGQSQLYT AQHQASPPTS SPTASFPPPP SSGASFQHGG PGAPPSSSAY 1001 1050 ENSTTRP00000007248/1-1194 ALAPGATGTL PAAGELPASQ RTGSQNGWND PPALNRVPKK KKMPENFTPP ENSP00000378721/1-1220 ALPPGTTGTL PAASELPASQ RTGPQNGWND PPALNRVPKK KKMPENFMPP ENSBTAP00000027346/1-1160 ALPPGT---- ---------- -TGPQNGWND PPALNRGPKK KKMPENFTPP BACU002015/1-1107 ---------- ---------- -IGSQNGWND PPALNRVPKK KKMPENFTPP bmy_20589T0/1-934 ALPPGATGTL PAAGELPASQ RTGSQNGWND PPALNRVPKK KK-------- 1051 1100 ENSTTRP00000007248/1-1194 VPITSPIMNP LGDHQSQMLQ QQPSAPVPLS SQASFPQPHL PGGQPFHGIQ ENSP00000378721/1-1220 VPITSPIMNP LGDPQSQMLQ QQPSAPVPLS SQSSFPQPHL PGGQPFHGVQ ENSBTAP00000027346/1-1160 VPITSPIMNP LGDPQSQMLQ QQPSAPVPLS SQAPFPQPHL AGGQPFRGIQ BACU002015/1-1107 VPITSPIMNP LGDPQSQMLQ QQPSAPGPLS SQASFPQPHL PGGQPFHGIQ bmy_20589T0/1-934 ---------- -----SQMLQ QQPSAPVPLS SQASFPQPHL PGGQPFHGIQ 1101 1150 ENSTTRP00000007248/1-1194 QPLSQPGMPP SFSKPNIEGA PGAPIGNTMQ HVQSLPTEKI TKKPIPDEHL ENSP00000378721/1-1220 QPLGQTGMPP SFSKPNIEGA PGAPIGNTFQ HVQSLPTKKI TKKPIPDEHL ENSBTAP00000027346/1-1160 QPLSQPGMPP SFSKPNIEGA PGAPIGNTMQ HVQSLPTEKI TKKPIPDEHL BACU002015/1-1107 QPLSQPGMPP SFSKPNIEGA PGAPIGNTMQ HVQSLPTEKI TKKPIPDEHL bmy_20589T0/1-934 QPLSQPGMPP SFSKPNIEGA PGAPIGNTMQ HVQSLPTEKI TKKPIPDEHL 1151 1200 ENSTTRP00000007248/1-1194 ILKTTFEDLI QRCLSSATDP QTKRKLDDAS KRLEFLYDKL REQTLSPTII ENSP00000378721/1-1220 ILKTTFEDLI QRCLSSATDP QTKRKLDDAS KRLEFLYDKL REQTLSPTIT ENSBTAP00000027346/1-1160 ILKTTFEDLI QRCLSSATDP QTKRKLDDAS KRLEFLYDKL REQTLSPTII BACU002015/1-1107 ILKTTFEDLI QRCLSSATDP QTKRKLDDAS KRLEFLYDKL REQTLSPTII bmy_20589T0/1-934 ILKTTFEDLI QRCLSSATDP QTKRKLDDAS KRLEFLYDKL REQTLSPTII 1201 1250 ENSTTRP00000007248/1-1194 NGLHNIARSI ETRNYSEGLT IHTHIVSTSN FSETSAFMPV LKVVLTQANK ENSP00000378721/1-1220 SGLHNIARSI ETRNYSEGLT MHTHIVSTSN FSETSAFMPV LKVVLTQANK ENSBTAP00000027346/1-1160 NGLHNIARSI ETRNYSEGLT IHTHIVSTSN FSETSAFMPV LKVVLTQANK BACU002015/1-1107 NGLHNIARSI ETRNYSEGLT IHTHIVSTSN FSETSAFMPV LKVVLTQANK bmy_20589T0/1-934 NGLHNIARSI ETRNYSEGLT IHTHIVSTSN FSETSAFMPV LKVVLTQANK 1251 1300 ENSTTRP00000007248/1-1194 LGV ENSP00000378721/1-1220 LGV ENSBTAP00000027346/1-1160 LGV BACU002015/1-1107 LGV bmy_20589T0/1-934 LGV