KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:32:16 2014 Check: 00 .. Name: bmy_16115T0/1-507 Len: 747 Check: 4543 Weight: 1.00 Name: ENSP00000223061/1-449 Len: 747 Check: 3312 Weight: 1.00 Name: ENSBTAP00000027347/1-451 Len: 747 Check: 4342 Weight: 1.00 Name: BACU012073/1-694 Len: 747 Check: 7762 Weight: 1.00 Name: ENSTTRP00000008442/1-448 Len: 747 Check: 458 Weight: 1.00 // 1 50 bmy_16115T0/1-507 MLPTTTASLL GPLLTAWALL LPFTQGQSPN YTRPVFLCGG DVTGESGYLA ENSP00000223061/1-449 MLPAATASLL GPLLTA-CAL LPFAQGQTPN YTRPVFLCGG DVKGESGYVA ENSBTAP00000027347/1-451 MLPAATASLL GPLLTAWALL LPFTHGQTPN YTRPVFLCGG DVTGESGYVA BACU012073/1-694 MLPTTTASLL GPLLTAWALL LPFTQGQSPN YTRPVFLCGG DVTGESGYLA ENSTTRP00000008442/1-448 MLPTTTASLL GPLLTAWALL LPFTQGQSPN YTRPVFLCGG DVTGESGYLA 51 100 bmy_16115T0/1-507 SEGFPNLYPA NKECVWTITT S-GLVLCTSH K--PSALHP- ---DGVPSAS ENSP00000223061/1-449 SEGFPNLYPP NKECIWTITV PEGQTVSLSF RVFDLELHPA CRYDALEVFA ENSBTAP00000027347/1-451 SEGFPNLYPP NKECIWTITV PKSQTVSLSF RVFDLEQHPS CRYDALEIFA BACU012073/1-694 SEGFPNLYPA NKECVWTITV PEGQTVSLSF RVFDLELHPS CRCDALEVFA ENSTTRP00000008442/1-448 SEGFPNLYPA NKECVWTITV PEGQTVSLSF RVFDLELHPS CRYDALEVFA 101 150 bmy_16115T0/1-507 GPVSVGNAWG KRGALCLVVS RLTLQVPDPV PTIRSLRARL CPSPSESLTW ENSP00000223061/1-449 GSGTSGQRLG R---FC---- ---------- -------GTF RPAP------ ENSBTAP00000027347/1-451 GSGTSGQQLG R---FC---- ---------- -------GTF RPAP------ BACU012073/1-694 GPGTSGQRLG R---FC---- ---------- -------GTF RPAP------ ENSTTRP00000008442/1-448 GPGTSGQRLG R---FC---- ---------- -------GTF RPAP------ 151 200 bmy_16115T0/1-507 SCTPPAVMTL WRMSQDLTLR TTATEATAGP PWMCVLLRAV RGAGGHAGGE ENSP00000223061/1-449 ---------L VAPGNQVTLR MTTDEGTGGR GFL--LWYSG RATSGT---- ENSBTAP00000027347/1-451 ---------V VASGNQVTLR MRSDEGTGGR GFL--LWYSG RATSGT---- BACU012073/1-694 ---------L VAPGNQVTLR MTSDEGTGGR GFL--LWYSG RATSGT---- ENSTTRP00000008442/1-448 ---------L VAPGNQVTLR MTSDEGTGGR GFL--LWYSG RATSGT---- 201 250 bmy_16115T0/1-507 RGGRGERPGG GGRAEEVRGE SSAPSAARGP AAQPPP---- -----LPRRQ ENSP00000223061/1-449 -----EHQFC GGRLEKAQGT LTTPNW---P ESDYPPGISC SWHIIAPPDQ ENSBTAP00000027347/1-451 -----EHQFC GGRLEKAQGT LTTPNW---P ESDYPPGISC SWHIIAPPDQ BACU012073/1-694 -----EHQFC GGRLEKAQGT LTTPNW---P ESDYPPGISC SWHIIAPPDQ ENSTTRP00000008442/1-448 -----EHQFC GGRLEKAQGT LTTPNW---P ESDYPPGISC SWHIIAPPDQ 251 300 bmy_16115T0/1-507 VISLTFGKFD LEPDSYCRYD SVSVFNGAVS DDAKRLGKFC GDTAPGPISS ENSP00000223061/1-449 VIALTFEKFD LEPDTYCRYD SVSVFNGAVS DDSRRLGKFC GDAVPGSISS ENSBTAP00000027347/1-451 VISLTFGKFD LEPDSYCRYD SVSVFNGPVS DDAKRLGKFC GDTVPGSITS BACU012073/1-694 VISLTFGKFD LEPDSYCRYD SVSVFNGAVS DDAKRLGKVW GDTAPGPISS ENSTTRP00000008442/1-448 VISLTFGKFD LEPDSYCRYD SVSVFNGAVS DDAKRLGKFC GDTAPGPISS 301 350 bmy_16115T0/1-507 EGNELLVQFV SDLSVTADGF SASYRTLPRG ATEGGPARSP GEDARPSPPL ENSP00000223061/1-449 EGNELLVQFV SDLSVTADGF SASYKTLPRG TAKEGQ---- ---------- ENSBTAP00000027347/1-451 EGNELLVQFV SDLSVTADGF SASYRTQPRG ATEGVPGEV- ---------- BACU012073/1-694 EGNELLVQFV SDLSVTADGF SASYRTLPRG ATEGGPARSP GEDARPSPPL ENSTTRP00000008442/1-448 EGNELLVQFV SDLSVTADGF SASYRTLPRG ATEGGP---- ---------- 351 400 bmy_16115T0/1-507 LGPGPKPGAG PKVKPEVPPE EKPKAAPKAE ATPVGPDAPS VSCPKQCRRT ENSP00000223061/1-449 -GPGPKRGTE PKVK--LPPK SQPPE--KTE ESPSAPDAP- -TCPKQCRRT ENSBTAP00000027347/1-451 -GLGPKPGAG PKVKPEVPPE EKSKAAPKAE ATPVGPDAPS VTCPKQCRRT BACU012073/1-694 LGPGPKPGAG PKVKPEVPPE EKPKAAPKAE ATPVGPDASS VSCPKQCRRT ENSTTRP00000008442/1-448 -GPGPKPGVG PKVKPKSPEE -------KAE ATPVGPDAPS VSCPKQCRRA 401 450 bmy_16115T0/1-507 GTLQSHFCNS DLVVTGMMKS MVRGPGEGLT VTVNLTGVYK TGGLDLPSPP ENSP00000223061/1-449 GTLQSNFCAS SLVVTATVKS MVREPGEGLA VTVSLIGAYK TGGLDLPSPP ENSBTAP00000027347/1-451 GTLQSHFCNS DLVVTGMIKS MVRGPGEGLT ATVNVTGVYK TGGLDLPSPP BACU012073/1-694 GTLQSHFCNS DLVVTGMMKS MVRGPGEGLT VTVNLTGVYK TGGLDLPSPP ENSTTRP00000008442/1-448 GTLQSHFCNS DLVVTGMMKS MVRGPGEGLT VTVSLTGVYK TGGLDLPSPP 451 500 bmy_16115T0/1-507 TDTSLKFYVP CKQCPPMKKG ISYLLMGQVE ENRGPILPPE SFVVLYRPTQ ENSP00000223061/1-449 TGASLKFYVP CKQCPPMKKG VSYLLMGQVE ENRGPVLPPE SFVVLHRPNQ ENSBTAP00000027347/1-451 TDTLLKFYVP CKQCPPMKKG ISYLLMGQVD KNRGPILPPE SFVVLHRPTQ BACU012073/1-694 TDTSLKFYVP CKQCPPMKKG ISYLLMGQVE ENRGPILPPE SFVVLYRPTQ ENSTTRP00000008442/1-448 TDTSLKFYVP CKQCPPMKKG ISYLLMGQVE ENRGPILPPE SFVVLYRPTQ 501 550 bmy_16115T0/1-507 HQILTNLSKR -C-------- ---------- --------PS KPV------- ENSP00000223061/1-449 DQILTNLSKR KC-------- ---------- --------PS QPV------- ENSBTAP00000027347/1-451 HQILTNLSRK -C-------- ---------- --------PS KPV------- BACU012073/1-694 HQILTNLSKR ACMRRGAPQD QELVGPGAPG RGSRGAPPPS GPVVPVLVFP ENSTTRP00000008442/1-448 HQILTNLSKR -C-------- ---------- --------PS KPV------- 551 600 bmy_16115T0/1-507 --------QA AGSQA----- ---------- ---------- ---------- ENSP00000223061/1-449 --------RA AASQD----- ---------- ---------- ---------- ENSBTAP00000027347/1-451 ---------- ---------- ---------- ---------- ---------- BACU012073/1-694 PDLVFRADQR SGSRQLLTLY NPTGAALRFR VLCTAPAKYT VFDAEGYVKP ENSTTRP00000008442/1-448 --------QA AGSQA----- ---------- ---------- ---------- 601 650 bmy_16115T0/1-507 ---------- ---------- ---------- ---------- ---------- ENSP00000223061/1-449 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027347/1-451 ---------- ---------- ---------- ---------- ---------- BACU012073/1-694 QSCIDIVIRH VAPNPSHYDV QDRFRIELSE EGTDGRVVGR KDITSVLRAP ENSTTRP00000008442/1-448 ---------- ---------- ---------- ---------- ---------- 651 700 bmy_16115T0/1-507 ---------- ---------- ---------- ---------- ---------- ENSP00000223061/1-449 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027347/1-451 ---------- ---------- ---------- ---------- ---------- BACU012073/1-694 AYPLELQGQP DPTPHPEPPS WTAPPTAQHF PENPLPHLAT SSFLLFLLMG ENSTTRP00000008442/1-448 ---------- ---------- ---------- ---------- ---------- 701 750 bmy_16115T0/1-507 ---------- ---------- ---------- ---------- ------- ENSP00000223061/1-449 ---------- ---------- ---------- ---------- ------- ENSBTAP00000027347/1-451 ---------- ---------- ---------- ---------- ------- BACU012073/1-694 TVSVAFLLLP LQDELGSQLP QILHVSLGQK LVAAYVLGLL TMVFLRT ENSTTRP00000008442/1-448 ---------- ---------- ---------- ---------- -------