KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 4  Type: P  Thu May 15 17:32:18 2014  Check: 00 ..

 Name: ENSBTAP00000027359/1-195  Len:    235  Check:  1969  Weight:  1.00
 Name: bmy_00721T0/1-235         Len:    235  Check:  332  Weight:  1.00
 Name: BACU011958/1-195          Len:    235  Check:  1430  Weight:  1.00
 Name: ENSTTRP00000016494/1-195  Len:    235  Check:  8679  Weight:  1.00

//


                          1                                                   50
ENSBTAP00000027359/1-195  MGCTRDAILD ALENLTADEF KKFKMKLLSV PLREGYGRIP RGTLLPLDAV 
bmy_00721T0/1-235         MGCTRDAILD ALENLTADEF KKFKMKLLSV PLREGYGRIP RGTLLPMDAV 
BACU011958/1-195          MGCTRDAILD ALENLTADEF KKFKMKLVSV PLREGYGRIP RGTLLPMDPV 
ENSTTRP00000016494/1-195  MGCTRDAILD ALENLTADEF KKFKMKLLSV PLREGYGRIP RGTLLPMDAV 


                          51                                                 100
ENSBTAP00000027359/1-195  DLTDKLVSYY LEAYGAELTA LVLRDMGMQE VAEQLQETMS KG-------- 
bmy_00721T0/1-235         DLTDKLVSYY LEAYGAELTV LVLCNMGMQE VAEQLQETLR KGECSPSTQV 
BACU011958/1-195          DLTDKLVSYY LEAYGAELTV LVLCNMGMQE VAEQLQETLR KG-------- 
ENSTTRP00000016494/1-195  DLTDKLVSYY LEAYSAELTV FVLCNIGMQE VAEQLQETLC KG-------- 


                          101                                                150
ENSBTAP00000027359/1-195  ---------- ----PRNVLA EVRDPLQKTA KPG------- ---------- 
bmy_00721T0/1-235         QTSIPSTPSC QPRSPGTTPA GIKAPPQTAA KPGSSTHPGP SASPLPPPAP 
BACU011958/1-195          ---------- ----PGTTPA GIKEPPQTAA KPA------- ---------- 
ENSTTRP00000016494/1-195  ---------- ----PGTTPA GIKAPPQTAA KPA------- ---------- 


                          151                                                200
ENSBTAP00000027359/1-195  -LHFVDQHRA ALIARVTVVD GVLDALYGKV LTEEQYQAVR AERTSSDKMR 
bmy_00721T0/1-235         ALHFVDQHRA ALIARVTDVD GVLDALYGKV LTEXQYQAVX AEXTNPTKMR 
BACU011958/1-195          -LHFVDQHRA ALIARVTDVD GMLDALYGKV LTEQQYQAVR AERTNPTKMR 
ENSTTRP00000016494/1-195  -LHFVEQHRA ALIARVTDVD GVLDALYGKV LTEDQYQAVR AECTNSNKMR 


                          201                                                250
ENSBTAP00000027359/1-195  KLFSFSPAWN MTCKDLLLQA LRDTQPYLVD DLEQS 
bmy_00721T0/1-235         XLFSFAPAWN LTCKDLLLQA LRDTQPYLVV DLEQS 
BACU011958/1-195          MLFSFAPAWN LTCKDLLLQA LRDTQPYLVV DLEQS 
ENSTTRP00000016494/1-195  KLFSFAPAWN LTCKNLLLQA LRDTQPYLVV DLEQS