KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:32:18 2014 Check: 00 .. Name: bmy_13389T0/1-411 Len: 676 Check: 1224 Weight: 1.00 Name: ENSTTRP00000011090/1-663 Len: 676 Check: 1095 Weight: 1.00 Name: ENSP00000326627/1-647 Len: 676 Check: 4866 Weight: 1.00 Name: BACU012729/1-507 Len: 676 Check: 6430 Weight: 1.00 Name: ENSBTAP00000027364/1-539 Len: 676 Check: 4226 Weight: 1.00 // 1 50 bmy_13389T0/1-411 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011090/1-663 MLSGAAGAAR RGGAALAPSL ARSLAGTHAG ADSCAGADKG SHKETIEERD ENSP00000326627/1-647 MLSGAAGAAR RGGAALAPSL TRSLAGTHAG ADSCAGADKG SHKETIEERD BACU012729/1-507 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027364/1-539 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_13389T0/1-411 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011090/1-663 KRRQRRQRQR QRQRQRQGCG VAGSGSDSPT SGPHPVPVLF PFALSLEEQP ENSP00000326627/1-647 KRQQR----Q QRQRQHQGCG AAGSGSDSPT SGPHPVPVLF PLALSLEEQP BACU012729/1-507 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027364/1-539 ---------- ---------- ---------- ---------- ---------- 101 150 bmy_13389T0/1-411 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011090/1-663 LSPQPLWRAP GLLAREGQGR -APTSPSSWA QMPIEIVCKI KFAEEDAKLK ENSP00000326627/1-647 LPPLPLGRAP GLLAREGQGR EALASPSSRG QMPIEIVCKI KFAEEDAKPK BACU012729/1-507 ---------- ---------- ---------- -MPIEIVCKI KFAEEDAKPK ENSBTAP00000027364/1-539 ---------- ---------- ---------- -MPIEIVCKI KFAEEDAKPK 151 200 bmy_13389T0/1-411 ------MEEV VGCAATRVLP ---------- ---------- -----LRS-- ENSTTRP00000011090/1-663 E-EAGDEQSL LGVARGASAL RDLVTFASTS TLHGLGRTCG P-PHGLRRTL ENSP00000326627/1-647 EKEAGDEQSL LGAVAPGAAP RDLATFASTS TLHGLGRACG PGPHGLRRTL BACU012729/1-507 EKEAGDEQSL LGAARGAAAP RDLATFASTS TLHGLGRACG PGPHGLRRTL ENSBTAP00000027364/1-539 EKEAGDEQSL LGAAQGAAAP RDLATFASTS TLHGLGRACG PGPHGLRRTL 201 250 bmy_13389T0/1-411 WRLHSLLP-- -------AWP RDRLQGNALL CPAVGPDPGC AGVLALPVWP ENSTTRP00000011090/1-663 WALXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000326627/1-647 WALALLTSLA AFLYQAAGLA RGYLTRPHLV AMDPAAPAPV AGFPAVTLCN BACU012729/1-507 WALALLTSLA AFLYQAAGLA RGYLTRPHLV VMDPAAPAPV AGFPAVTLCN ENSBTAP00000027364/1-539 WALALLTSLA AFLYQAAGLA RGYLTRPHLV VMDPAAPAPA AGFPAVTLCN 251 300 bmy_13389T0/1-411 VHSLQSIVHQ QTQ----SPS THLPLSPQLC TVASKEAY-- ----QLLATP ENSTTRP00000011090/1-663 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000326627/1-647 INRFRHSALS DADIFHLANL TGLPPKDRDG HRAAGLRYPE PDMVDILNRT BACU012729/1-507 INRFRHSALS DADIFHLANL TGLPPKDRDG HRAAGLRYPE PDMVDILNRT ENSBTAP00000027364/1-539 INRFRHSALS DADIFHLANL TGLPPKDRDG HRAAGLRYPE PDMVDILNRT 301 350 bmy_13389T0/1-411 NGSYVPARAS ASISGAPAP- SGVHMVYTRY GKCYTFNADP QSSLPSRXGG ENSTTRP00000011090/1-663 XXXXXXXXXX XXXXXXXXXX XXXXXVYTRY GKCYTFNADP QSSLASRVGG ENSP00000326627/1-647 GHQLADMLKS CNFSGHHCSA SNFSVVYTRY GKCYTFNADP RSSLPSRAGG BACU012729/1-507 GHQLADMLKS CNFSGHHCST SNFSVVYTRY GKCYTFNADP QSSLPSRVGG ENSBTAP00000027364/1-539 GHQLADMLKS CNFSGHHCSA SNFSVVYTRY GKCYTFNADP QSSLPSRAGG 351 400 bmy_13389T0/1-411 MGSGLEIMLD IQQEEYLPIW RETNETSFEA GIRVQIHSQE EPPYIHQLGF ENSTTRP00000011090/1-663 MGSGLEIMLD IQQEEYLPIW RETNETSFEA GIRVQIHSQE EPPYIHQLGF ENSP00000326627/1-647 MGSGLEIMLD IQQEEYLPIW RETNETSFEA GIRVQIHSQE EPPYIHQLGF BACU012729/1-507 MGSGLEIMLD IQQEEYLPIW RETNETSFEA GIRVQIHSQE EPPYIHQLGF ENSBTAP00000027364/1-539 MGSGLEIMLD IQQEEYLPIW RETNETSFEA GIRVQIHSQE EPPYIHQLGF 401 450 bmy_13389T0/1-411 GVSPGFQTFV SCQEQRLTYL PQPWGNCRAE SGLREPELQG YSAYSVSACR ENSTTRP00000011090/1-663 GVSPGFQTFV SCQEQRLTYL PQPWGNCRAE SALREPELQG YSAYSVSACR ENSP00000326627/1-647 GVSPGFQTFV SCQEQRLTYL PQPWGNCRAE SELREPELQG YSAYSVSACR BACU012729/1-507 GVSPGFQTFV SCQEQRLTYL PQPWGNCRAE SGLREPELQG YSAYSVSACR ENSBTAP00000027364/1-539 GVSPGFQTFV SCQEQRLTYL PQPWGNCRAE SGLREPELQG YSAYSVSACR 451 500 bmy_13389T0/1-411 LRCEKEAVLQ RCHCRMVHMP ---------- ---------D SLGGGSEGPC ENSTTRP00000011090/1-663 LRCEKEAVLQ RCHCRMVHMP GNETICPPNI YIECADHTLD SLGGGSEGPC ENSP00000326627/1-647 LRCEKEAVLQ RCHCRMVHMP ---------- ---------D SLGGGPEGPC BACU012729/1-507 LRCEKEAVLQ RCHCRMVHMP ---------- ---------D SLGGGSEGPC ENSBTAP00000027364/1-539 LRCEKEAVLQ RCHCRMVHMP GNETICPPNI YIECADHTLD SLGGGSGGPC 501 550 bmy_13389T0/1-411 FCPTPCNLTR YGKEISMVRI PNRGSARYLA RKYNRNETYI RENFLVLDVF ENSTTRP00000011090/1-663 FCPIPCNLTR YGKEISMVKI PNRGSARYLA RKYKRNETYI RENFLVLDVF ENSP00000326627/1-647 FCPTPCNLTR YGKEISMVRI PNRGSARYLA RKYNRNETYI RENFLVLDVF BACU012729/1-507 FCPTPCNLTR YGKEISMVRI PNRGSA---- ---------- RENFLVLDVF ENSBTAP00000027364/1-539 FCPTPCNLTR YGKEISMVRI PNRGSARYLA RKYNRNETYI RENFLVLDVF 551 600 bmy_13389T0/1-411 FEALTSEAME QRAAYGLSAL LGVLGPT--- --EAGVASSQ DPPPDRH--- ENSTTRP00000011090/1-663 FEALTSEAME QRAAYGLSAL LGDLGGQMGL FIGASVLTLL EILDYIYE-- ENSP00000326627/1-647 FEALTSEAME QRAAYGLSAL LGDLGGQMGL FIGASILTLL EILDYIYE-- BACU012729/1-507 FEALTSEAME QRAAYGLSAL LGDLGGQMGL FIGASVLTLL EILDYIYEAR ENSBTAP00000027364/1-539 FEALTSEAME QRAAYGLSAL LGDLGGQMGL FIGASILTLL EILDYIYE-- 601 650 bmy_13389T0/1-411 ------WGHL H--------- ----FGASGT EGAESLPKPG PRWRRHRQPA ENSTTRP00000011090/1-663 ----VSWDRL RRAWRRPKTP LRTATGGIST LGLQELKEQS TCPSQGRAEG ENSP00000326627/1-647 ----VSWDRL KRVWRRPKTP LRTSTGGIST LGLQELKEQS PCPSRGRVEG BACU012729/1-507 GGALVSWDRL RRAWRRPKTP LRTATGGIST LGLQELKEQS PCPSQGHA-G ENSBTAP00000027364/1-539 ----VSWDRL KRAWRRPKTP LRTSTGGIST LGLQELKEQV PCPSRGRAEG 651 700 bmy_13389T0/1-411 -------PKP P----PPRRP L----- ENSTTRP00000011090/1-663 GGTSGLLPNH H----PPGGL FEDFAC ENSP00000326627/1-647 GGVSSLLPNH HHPHGPPGGL FEDFAC BACU012729/1-507 GGTGSLLPNH H----PPGGL FEDFAC ENSBTAP00000027364/1-539 GGASSLLPNH HHPHGPPGSL FEDFAC