KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:32:20 2014 Check: 00 .. Name: BACU007475/1-323 Len: 542 Check: 2442 Weight: 1.00 Name: ENSP00000307369/1-495 Len: 542 Check: 268 Weight: 1.00 Name: ENSBTAP00000027370/1-522 Len: 542 Check: 8904 Weight: 1.00 Name: ENSTTRP00000013268/1-468 Len: 542 Check: 7169 Weight: 1.00 Name: bmy_09705T0/1-499 Len: 542 Check: 3753 Weight: 1.00 // 1 50 BACU007475/1-323 ---------- ---------- ---------- ---------- ---------- ENSP00000307369/1-495 MQWSPTPGAS ACLGWASSLA CSTAPTLLGR AGRGPLMAAK WFKEFPLNLK ENSBTAP00000027370/1-522 MQWPPVPGAS PCLSWASSLA CSAATTLLSR AGRAPLMAAK WFKEFPLNLK ENSTTRP00000013268/1-468 ---------- ---------- ---ATTLLSR AGRAPLMAAK WFKEFPLNLK bmy_09705T0/1-499 MQWPPAPGAS PCLSWASSLA CSAATTLLSR AGRAPLMAAK WFKEFPLNLK 51 100 BACU007475/1-323 ---------- ---------- ---------- ---------- ---------- ENSP00000307369/1-495 TVSERAKP-G GGGGKLRKNS EAGGAGPGPG KGRKNSAAEL GSGRAGVGP- ENSBTAP00000027370/1-522 TVSERAKPGG GGGGKLRKNS ETGGSGPAPG KGRKNSAAEL GSGRAGVGPA ENSTTRP00000013268/1-468 TVSERAKPGG GGGGKLRKNS EAGGAGPAPG KGRKNSAAEL GSSRAGVGPP bmy_09705T0/1-499 TVSERAKPGG GGGGKLRKNS EAGGAGPAPG KGRKNSAAEL GSSRAGVGPP 101 150 BACU007475/1-323 ---------- ---------- ---------- ---------- ---------- ENSP00000307369/1-495 KDSRLSRDSL QGLIQAAAGK GRKNSRATEE EPHRGATKSS GCSTYINRLI ENSBTAP00000027370/1-522 KDSRLSRDSL QGLIQAAAGK GRKNSRATEE EPHRGAAKSS GCSTYINRLI ENSTTRP00000013268/1-468 KDSRLSRDSL QGLIQAAAGK GRKNSRATEE EPHRGAAKSS GCSTYINRLI bmy_09705T0/1-499 KDSRLSRDSL QGLIQAAAGK GRKNSRATEE EPHRGAAKSS GCSTYINRLI 151 200 BACU007475/1-323 ---------- ---------- ---------- --MPYCLGRE RE-------- ENSP00000307369/1-495 KVDTQEKNGK SNYPSSSSSS SSSS---SSA SSSPSSLGPE LDKGKIIKQQ ENSBTAP00000027370/1-522 KVDTQEKNGK SNYPSSSSSS SSSSSSSSSA SSSPSSLGPE LDKGKIIKQQ ENSTTRP00000013268/1-468 KVDTQEKNGK SNYPSSSSSS SSSNSSSSSA SSSPSSLGPE LDKGKIIKQQ bmy_09705T0/1-499 KVDTQEKNGK SNYPSSSSSS SSSSSSPSSA SSSPSSLGPE LDKGKIIKQQ 201 250 BACU007475/1-323 --VIILEDYA DPYDAKRTKG QRDAERVGEN DGYMEPYDAQ QMITG----D ENSP00000307369/1-495 ETVIILEDYA DPYDAKRTKG QRDAERVGEN DGYMEPYDAQ QMITEIRRRG ENSBTAP00000027370/1-522 DTVIILEDYA DPYDAKRTKG QRDAERVGEN DGYMEPYDAQ QMITEIRRRG ENSTTRP00000013268/1-468 DTVIILEDYA DPYDAKRTKG QRDAERVGEN DGYMEPYDAQ QMITEIRRRG bmy_09705T0/1-499 DTVIILEDYA DPYDAKRTKG QRDAERVGEN DGYMEPYDAQ QMITEIRRRG 251 300 BACU007475/1-323 WREEVVGPFP QLGSHQPSKE QSRRSKPPST RQTCRSGVQR GERRKARGAG ENSP00000307369/1-495 SKDPLVKALQ LLDSPCEPAD GGLKSETLAK RRSSK----- ---------- ENSBTAP00000027370/1-522 SKDPLVKALQ LLDSPCEPGE NGPKPEALTK RRSSK----- ---------- ENSTTRP00000013268/1-468 SKDPLV-ALQ LLDSPCES-E NGTKLEALAK RRSSK----- ---------- bmy_09705T0/1-499 SKDPLVKALQ LLDSPCEPGE NGAKPEALAK RRSSK----- ---------- 301 350 BACU007475/1-323 QETELQGAAG EAAAYDTPYE PAAEGGP-RA EGLERKA--- -----RLPQE ENSP00000307369/1-495 ---DLLGKPP QL--YDTPYE PA-EGGP-RA EGKARPP--- ---DSRLPEN ENSBTAP00000027370/1-522 ---ELLGKSP QL--YDTPYE PAAEAGPFAA EGPERKARLP PDSHGRLPQD ENSTTRP00000013268/1-468 ---ELLGKPP QL--YDTPYE PAG-----RR PGPERKA--- -----RLPQD bmy_09705T0/1-499 ---ELLGKPP QL--YDTPYE PAAEGGP-RA EGPERKT--- -----RLPQD 351 400 BACU007475/1-323 DERPAAEYEQ PWEWKKEQIV RALSVQFEGS ERPSVKEETV RQHHRQKSWT ENSP00000307369/1-495 DERPAAEYEQ PWEWKKEQIV RALSVQFEGA ERPSFREETV RQHHRQKSWT ENSBTAP00000027370/1-522 DERPAAEYEQ PWEWKKEQIV RALSVQFEGS ERPSVKEEAA RQHHRQKSWT ENSTTRP00000013268/1-468 DERPAAEYEQ PWEWKKEQIV RALSVQFEGS ERPSVKEETV RQHHRQKSWT bmy_09705T0/1-499 DERPAAEYEQ PWEWKKEQIV RALSVQFEGS ERPSIKEETV RQHHRQKSWT 401 450 BACU007475/1-323 QKILKPTLSD HSEGERWDPA LPLEKQPWYH GAITRAEAES RLQPCKEAGY ENSP00000307369/1-495 QKILKPALSD HSEGEKVDPG LPLEKQPWYH GAISRAEAES RLQPCKEAGY ENSBTAP00000027370/1-522 QKILKPALTD HSEGERVDPA LPLEKQPWYH GAITRAEAES RLQSCKEAAY ENSTTRP00000013268/1-468 QKILKPTLSD HSEGERVDPA LPLEKQPWYH GAITRAEAES RLQPCKEAGY bmy_09705T0/1-499 QKILKPTLSD HSEGERVDPA LPLEKQPWYH GAITRAEAES RLQPCKEAGY 451 500 BACU007475/1-323 LVRNSESGTS RYSIALKTSQ GCVHIIVAQT KDNKYTLNQT SAVFDSIPEV ENSP00000307369/1-495 LVRNSESGNS RYSIALKTSQ GCVHIIVAQT KDNKYTLNQT SAVFDSIPEV ENSBTAP00000027370/1-522 LVRNSESGTS RYSIALKTSQ GCVHIIVAQT KDNKYTLNQT SAVFGSIPEV ENSTTRP00000013268/1-468 LVRNSES--T SYSIALKTSQ GCVHIIVAQT KDNKYTLNQT SAVFDSIPEV bmy_09705T0/1-499 LVRNSESGTS RYSIALKTSQ GCVHIIVAQT KDSKYTLNQT SAVFDSIPEV 501 550 BACU007475/1-323 VHYYSNEKLP FKGAEHMTLL YPVHSKLH-- ---------- -- ENSP00000307369/1-495 VHYYSNEKLP FKGAEHMTLL YPVHSKLH-- ---------- -- ENSBTAP00000027370/1-522 VHYYSSEKLP FKGAEHMTLL YPVHSKLHQG PASKSPSGAS HT ENSTTRP00000013268/1-468 VHYYSNEKLP FKGAEHMTLL YPVHSKLH-- ---------- -- bmy_09705T0/1-499 VHYYSNEKLP FKGAEHMTLL YPVHSKLH-- ---------- --