KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:32:20 2014 Check: 00 .. Name: bmy_12291T0/1-165 Len: 299 Check: 7256 Weight: 1.00 Name: ENSTTRP00000001300/1-240 Len: 299 Check: 5649 Weight: 1.00 Name: BACU000605/1-299 Len: 299 Check: 1274 Weight: 1.00 Name: ENSP00000222275/1-258 Len: 299 Check: 2232 Weight: 1.00 Name: ENSBTAP00000027372/1-258 Len: 299 Check: 952 Weight: 1.00 // 1 50 bmy_12291T0/1-165 ---------- ---------- ---------- ------MGKA LLTETHAAGA ENSTTRP00000001300/1-240 ---------- ---------- ---------- -------MAS AAAATAEKGS BACU000605/1-299 MAEDIKTKIK NYQTAPFDSR FPNQNQTRNC WQNYLDFHRC EKAMTAKEGD ENSP00000222275/1-258 ---------- ---------- ---------- -------MAS AAAAEAEKGS ENSBTAP00000027372/1-258 ---------- ---------- ---------- -------MAS AAAATTEKGS 51 100 bmy_12291T0/1-165 AAPVQ----A LLTGCPVQ-L SGLALFAETV WVTADQYHVY PLMGVSGKDD ENSTTRP00000001300/1-240 PVVVG----L LVVGNIIILL SGLALFAETV WVTADQYRVY PLMGVSGKDD BACU000605/1-299 VSVCEWYRRV YKSLCPISWL SGLALFAETV WVTADQYRVY PLMGVSGKDD ENSP00000222275/1-258 PVVVG----L LVVGNIIILL SGLSLFAETI WVTADQYRVY PLMGVSGKDD ENSBTAP00000027372/1-258 PVVVG----L LVVGNIIILL SGLALFAETV WVTADQYRMY PLMGVSGKDD 101 150 bmy_12291T0/1-165 VFAGAWIAIF CGFSFFVVAS FGVGAALCRR RSMILTS--- -------PPD ENSTTRP00000001300/1-240 VFAGAWIAIF CGFSFFVVAS FGVGAVLSRH RSMMLTYLVL MLTVYIFECA BACU000605/1-299 VFAGAWIAIF CGFSFFAVAS FGVGAALCRR RSMMLTYLAL MLTVYIFECA ENSP00000222275/1-258 VFAGAWIAIF CGFSFFMVAS FGVGAALCRR RSMVLTYLVL MLIVYIFECA ENSBTAP00000027372/1-258 VFAGAWIAIF CGFSFFVVAS FGVGAALCRR RSMILTYLIL MLIIYIFECA 151 200 bmy_12291T0/1-165 PCLS------ ---------- ---------- ---------- -----LQQEC ENSTTRP00000001300/1-240 SCITSYTHRD YMVSSPSLIT KQMLTFYSAD SDQGRELTRL WDRIMIEQEC BACU000605/1-299 SCITSYTHRD YMVSNPSLIT KQMLTFYSAD SDQGRELTRL WDRIMIEQEC ENSP00000222275/1-258 SCITSYTHRD YMVSNPSLIT KQMLTFYSAD TDQGQELTRL WDRVMIEQEC ENSBTAP00000027372/1-258 SCITSYTHRD YMVSNPSLIT KQMLTFYSAD SNQGRELTRL WDRIMIEQEC 201 250 bmy_12291T0/1-165 CGTSGPTDWV NFTSAFRATT PEVVFPWPPL CCRRTGNFIP LSEEGCRLGH ENSTTRP00000001300/1-240 CGTSGPMDWV NFTSAFRATT PEVVFPWPPL CCRRTGNFIP LSEEGCRLGH BACU000605/1-299 CGTSGPTDWV NFTSAFRATT PEVVFPWPPL CCRRTGNFIP LSEEGCRLGH ENSP00000222275/1-258 CGTSGPMDWV NFTSAFRAAT PEVVFPWPPL CCRRTGNFIP LNEEGCRLGH ENSBTAP00000027372/1-258 CGTSGPMDWV NFTSAFRATT PEVVFPWPPL CCRRTGNFIP VNEEGCRLGH 251 300 bmy_12291T0/1-165 LDYLFTK--- ---------- ---------- ---------- --------- ENSTTRP00000001300/1-240 LDYLFTKAAS NTLATPSTAT RGASHGLGSP S--------- --------- BACU000605/1-299 LDYLFTKGCF EHIGHAIDSY TWGISWFGFA ILMWTLPVML MAMYFYTTL ENSP00000222275/1-258 MDYLFTKGCF EHIGHAIDSY TWGISWFGFA ILMWTLPVML IAMYFYTML ENSBTAP00000027372/1-258 LDYLFTKGCF EHIGHAIDSY TWGISWFGFA ILMWTLPVML IAMYFYTTL