KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:32:25 2014 Check: 00 .. Name: ENSP00000330460/1-619 Len: 1319 Check: 6789 Weight: 1.00 Name: ENSBTAP00000027398/1-620 Len: 1319 Check: 3726 Weight: 1.00 Name: ENSTTRP00000007689/1-618 Len: 1319 Check: 3780 Weight: 1.00 Name: bmy_21107T0/1-584 Len: 1319 Check: 960 Weight: 1.00 Name: BACU001697/1-1296 Len: 1319 Check: 5497 Weight: 1.00 // 1 50 ENSP00000330460/1-619 MFVPRSLKIK RNANDDGKSC VAKIIKPDPE DLQLDKSRDV PV-DAVATEA ENSBTAP00000027398/1-620 MFVPRSLKIK RNANDDSGNC VAKKVKAEAE DRGLDAGGDS LA-DASGTEG ENSTTRP00000007689/1-618 MFVPRSLKVR RNANDDDRSC AAKKVKPEAE DPQLGAGGDG PADDASGTKE bmy_21107T0/1-584 MFVPRSLKVK RNANDDGRSC AAKKVKPETE DPQLGAGGDG PA-DASGTKE BACU001697/1-1296 MFVPRSLKVK RNANDDGRSC AAKKVKPEAE DPQLGADGDG PA-DASGTKE 51 100 ENSP00000330460/1-619 ATIDRHI-SE SCPFPSPGGQ LAEVHSVSPE QGAKDSHPSE EPVKSFSKTQ ENSBTAP00000027398/1-620 AAAAAHQGAQ PHPLPGPTGP VSEGTLPDSE PGTQAGDLPE EPVKSFSKTQ ENSTTRP00000007689/1-618 AALRI---TE PCPLPGPASQ VPEGGLAGPG QQAQDSDLLE EPVKSFSKTQ bmy_21107T0/1-584 AAVAAHHGAQ PCSLPGPASQ VPEGGLAGPE QRAQDRDLLE EPVKSFSKTQ BACU001697/1-1296 AALAVHHGAQ PCPLPGPASQ VPEGGLAGPE RRAQDSDLLE EPVKSFSKSQ 101 150 ENSP00000330460/1-619 RWAEPGEPIC VVCGRYGEYI CDKTDEDVCS LECKAKHLLQ VKEKEEKSKL ENSBTAP00000027398/1-620 RQAEPGEPIC VVCGRYGEYV CDETDEDVCS LECKAKHLLQ VRGVEAASEP ENSTTRP00000007689/1-618 RQAEPGEPVC VVCGRYGEYI CNETDEDVCS LECKAKHLLQ VRGAEALLAP bmy_21107T0/1-584 RQAEPGEPVC VVCGRYGEYI CNETDEDVCS LECKAKHLLQ VRGAEGQLAP BACU001697/1-1296 RQAEPGEPVC VVCGRYGEYI CNETDEDVCS LECKAKH-LQ VRGAEGQLAP 151 200 ENSP00000330460/1-619 SNPQKADSEP ESPLNASYVY KEHPFILNLQ EDQIENLKQQ LGILVQGQEV ENSBTAP00000027398/1-620 SRPQKAGSEP AAPGPAPYVY TEHAFVSHLR EDQIENLRRQ LGITVRGRGV ENSTTRP00000007689/1-618 GGPQKAGSEP AAPHPASYVY TEHAFISNLR EDQIENLRRQ LGIVVQGPGV bmy_21107T0/1-584 GGPQKAGSEP LAPRPASYVY TEHAFISNLR EDQIENLRRQ LGIVVQGPGV BACU001697/1-1296 GGPQKAGSEP VAPRPASYVY TEHAFISNLR EDQIENLRRQ LGIVVQGPGV 201 250 ENSP00000330460/1-619 TRPIIDFEHC SLPEVLNHNL KKSGYEVPTP IQMQMIPVGL LGRDILASAD ENSBTAP00000027398/1-620 PRPIVDFEHC GFPEALNRNL KASGYEVPTP IQMQMIPVGL LGRDVLASAD ENSTTRP00000007689/1-618 PRPIIDFEHC GFPEALNLNL KTSGYEIPTP IQMQMVPLGL LGRDVLASAD bmy_21107T0/1-584 PRPIIDFEHC GFPEALNLNL KTSGYEVPTP IQMQMVPVGL LGRDVLASAD BACU001697/1-1296 PRPIIDFEHC GFPEALNLNL KTSGYEVPTP IQMQMVPVGL LGRDVLASAD 251 300 ENSP00000330460/1-619 TGSGKTAAFL LPVIMRALFE SKTPSALILT PTRELAIQIE RQAKELMSGL ENSBTAP00000027398/1-620 TGSGKTAAFL LPVILRALSQ SKSPSGLVLT PTRELAIQIE RQAKELMSGL ENSTTRP00000007689/1-618 TGSGKTAAFL LPVIMRALFQ SKMPSALILT PTRELAIQIE HQAKELMSGL bmy_21107T0/1-584 TGSGKTAAFL LPVIMRSLFQ SKMPSALVLT PTRELAIQIE RQAKELMSGL BACU001697/1-1296 TGSGKTAAFL LPVIVRSLFQ SKMPSALVLT PTRELAIQIE RQAKELMSGL 301 350 ENSP00000330460/1-619 PRMKTVLLVG GLPLPPQLYR LQQHVKVIIA TPGRLLDIIK QSSVELCGVK ENSBTAP00000027398/1-620 PCLRTALLVG GLPAPPQRHR LRQRIQVIIA TPGRLLDIIK QRSVELGSIK ENSTTRP00000007689/1-618 PRMRTALLVG GLPAPPQLHR LRQRVQVIIA TPGRLLDIIK QSAVELGGIK bmy_21107T0/1-584 PRMRTALLVG GLPAPPQLHR LRQRVQVIIA TPGRLLDIIK QSAVELGGIK BACU001697/1-1296 PHMRTALLVG GLPAPPQLHR LRQRVQVIIA TPGRLLDIIK QSAVELGGIK 351 400 ENSP00000330460/1-619 IVVVDEADTM LKMGFQQQVL DILENIPNDC QTILVSATIP TSIEQLASQL ENSBTAP00000027398/1-620 IVVVDEADTM LKMGFQQQVL DVLEQLPHDC QTVLASATIP ASVEQLACQL ENSTTRP00000007689/1-618 IVVVDEADTM LKMGFQQQVL DVLENVPRDC QTLLASATIP ASIEQLASQL bmy_21107T0/1-584 IVVVDEDVNI ---------- ---------- ---------- ---------- BACU001697/1-1296 IVVVDEADTM LKMGFQQQVL DILENVPHDC QTLLASATIP ASIEQLASQL 401 450 ENSP00000330460/1-619 LHNPVRIITG EKNLPCANVR QIILWVEDPA KKKKLFEILN DKKLFKPPVL ENSBTAP00000027398/1-620 LRDPVAITAG ERNLPCPSVR QIVLWVEEPA KKKKLFEILN DKKLFKPPVL ENSTTRP00000007689/1-618 LRDPVRIITG EKNLPCSNVR QIVLWVEEPA KKKKLFEILN XXXXXXXXXX bmy_21107T0/1-584 ----VSIPSG PSILERNNFK YVFL------ -------MFQ DKKLFKPPVL BACU001697/1-1296 LRDPVRIIAG EKNLPCSNVR QIVLWVEEPA KKKKLFEILN DKKLFKPPVL 451 500 ENSP00000330460/1-619 VFVDCKLGAD LLSEAVQKIT GLKSISIHSE KSQIERKNIL K--------- ENSBTAP00000027398/1-620 VFVDCKLGAD LLSEAVQKIT GLKSTSVHSD KTQMERKNIL K--------- ENSTTRP00000007689/1-618 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX X--------- bmy_21107T0/1-584 VFVDCKLGAD LLSEAVQKIT GLKSTSVHSE KSQPERKNIL KVTPSVLFSS BACU001697/1-1296 VFVDCKLGAD LLSEAVQKIT GLKSTSVHSE KSQPERKNIL K--------- 501 550 ENSP00000330460/1-619 ---------- --GLLEGDYE VVVSTGVLGR GLDLISVRLV VNFDMPSSMD ENSBTAP00000027398/1-620 ---------- --GLLEGDYD VVVSTGVLGR GLDLVGVKLV VNFDMPSSMD ENSTTRP00000007689/1-618 ---------- --GLLEGDYE VVVSTGVLGR GLDLVSVKLV VNFDMPPSMD bmy_21107T0/1-584 LSCKSVLPHF QEGLLEGDYE VVVSTGVLGR GLDLVSVKLV VNFDMPSSMD BACU001697/1-1296 ---------- --GLLEGDYE VVVSTGVLGR GLDLVSVKLV VNFDMPSSMD 551 600 ENSP00000330460/1-619 EYVHQIGRVG RLGQNGTAIT FINNNSKRLF WDIAKRVKPT GSILPPQLLN ENSBTAP00000027398/1-620 EYVHQIGRVG RLGQHGTAIT FINNNSKRLF WDIAKRVKPT GSLLPPQLLN ENSTTRP00000007689/1-618 EYVHQVGRVG RLGQNGTAIT FINNNSKRLF WDIAKRVKPT GSLLPPQLLN bmy_21107T0/1-584 EYVHQVGRVG RLGQNGTAIT FINNNSKRLF WDIAKRVKPT GSLLPPQLLN BACU001697/1-1296 EYVHQVGRVG RLGQNGTAIT FINNNSKRLF WDIAKRVKPT GSLLPPQLLN 601 650 ENSP00000330460/1-619 SPYLHDQKRK EQQKDKQTQN DLVTGANLMD IIRKHDKS-- ---------- ENSBTAP00000027398/1-620 SPYLHDQKRK EQQKDRQTQD NLVTGANLMD IIRKHDRS-- ---------- ENSTTRP00000007689/1-618 SPYLHDQRRK EQQKDKQTQN DLVTGANLMD IIRKHDKS-- ---------- bmy_21107T0/1-584 SPYLHDQKRK EQQKDRQTQN DLVTGANLMD IIRKHDKS-- ---------- BACU001697/1-1296 SPYLHDQKRK EQQKDRQTQN DLVTGANLMD IIRKHDKTTR AACSQFQVLH 651 700 ENSP00000330460/1-619 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027398/1-620 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007689/1-618 ---------- ---------- ---------- ---------- ---------- bmy_21107T0/1-584 ---------- ---------- ---------- ---------- ---------- BACU001697/1-1296 CTGHVDHALG DSLLKAAGGG DSGGEGALTH RLVMWTRHQR CAEHGGLKLH 701 750 ENSP00000330460/1-619 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027398/1-620 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007689/1-618 ---------- ---------- ---------- ---------- ---------- bmy_21107T0/1-584 ---------- ---------- ---------- ---------- ---------- BACU001697/1-1296 SKSDTSECEN DDPLLISASK TRDINSTYVI SACKKTEDTP LPPNPVGRLT 751 800 ENSP00000330460/1-619 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027398/1-620 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007689/1-618 ---------- ---------- ---------- ---------- ---------- bmy_21107T0/1-584 ---------- ---------- ---------- ---------- ---------- BACU001697/1-1296 LQRRVTRSKE SSLLGRELGD TTAKTAETRL ALQRRAKTDS VEKWKAVQNV 801 850 ENSP00000330460/1-619 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027398/1-620 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007689/1-618 ---------- ---------- ---------- ---------- ---------- bmy_21107T0/1-584 ---------- ---------- ---------- ---------- ---------- BACU001697/1-1296 GGKGENSCAS PATSINVKTV NNDRNFLVTP SVPLAADPKD PEVKAGGKYK 851 900 ENSP00000330460/1-619 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027398/1-620 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007689/1-618 ---------- ---------- ---------- ---------- ---------- bmy_21107T0/1-584 ---------- ---------- ---------- ---------- ---------- BACU001697/1-1296 ETLSVVSGAD ENVALKSLSD RPPSGSQSQT EAVRSGCLAT KPIQSKLDIR 901 950 ENSP00000330460/1-619 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027398/1-620 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007689/1-618 ---------- ---------- ---------- ---------- ---------- bmy_21107T0/1-584 ---------- ---------- ---------- ---------- ---------- BACU001697/1-1296 VSGTGSLHHR SAGKDGAKFA PKFESLEKRT PSKCVTEHRS TPKRGIPQFK 951 1000 ENSP00000330460/1-619 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027398/1-620 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007689/1-618 ---------- ---------- ---------- ---------- ---------- bmy_21107T0/1-584 ---------- ---------- ---------- ---------- ---------- BACU001697/1-1296 SPAASVLKNR MPTLQVKQRP KSSLLANKRE RSRENPFLLE EEPALQRTST 1001 1050 ENSP00000330460/1-619 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027398/1-620 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007689/1-618 ---------- ---------- ---------- ---------- ---------- bmy_21107T0/1-584 ---------- ---------- ---------- ---------- ---------- BACU001697/1-1296 ETDPLKVENS QVTVAVRVRP FSTREKSEET SQVVFLNGEE IAVEHPSMRQ 1051 1100 ENSP00000330460/1-619 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027398/1-620 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007689/1-618 ---------- ---------- ---------- ---------- ---------- bmy_21107T0/1-584 ---------- ---------- ---------- ---------- ---------- BACU001697/1-1296 VYSFVYDLSF WSVDECHPRF ASQTAVYEAL AAPLLEQAFE GFNTCLFAYG 1101 1150 ENSP00000330460/1-619 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027398/1-620 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007689/1-618 ---------- ---------- ---------- ---------- ---------- bmy_21107T0/1-584 ---------- ---------- ---------- ---------- ---------- BACU001697/1-1296 QTGSGKSYTM MGFSEEPGII PRFCDGLFAE IAKKQTQEVS YHLEMSFFEV 1151 1200 ENSP00000330460/1-619 ---------- ----NSQK-- ---------- ---------- ---------- ENSBTAP00000027398/1-620 ---------- ----NAQK-- ---------- ---------- ---------- ENSTTRP00000007689/1-618 ---------- ----NSQK-- ---------- ---------- ---------- bmy_21107T0/1-584 ---------- ----NSQK-- ---------- ---------- ---------- BACU001697/1-1296 YNEKIHDLLV CKGENGQRKQ TLRVREHPAS GPYVEGLSTN VVSSYSDIQI 1201 1250 ENSP00000330460/1-619 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027398/1-620 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007689/1-618 ---------- ---------- ---------- ---------- ---------- bmy_21107T0/1-584 ---------- ---------- ---------- ---------- ---------- BACU001697/1-1296 WLELGNKRKA TAATGMNDKS SRSHSVFTLV MTQTKTEFVE GEELDHRIRS 1251 1300 ENSP00000330460/1-619 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027398/1-620 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007689/1-618 ---------- ---------- ---------- ---------- ---------- bmy_21107T0/1-584 ---------- ---------- ---------- ---------- ---------- BACU001697/1-1296 RINLVDLAGS ERCSETQPSG ERLKEGVSIN KSLLTLGKVI SALSEQASGR 1301 1350 ENSP00000330460/1-619 ---------- --------- ENSBTAP00000027398/1-620 ---------- --------- ENSTTRP00000007689/1-618 ---------- --------- bmy_21107T0/1-584 ---------- --------- BACU001697/1-1296 RTFIPYRESV LTWQVAFGV