KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:32:28 2014 Check: 00 .. Name: ENSTTRP00000006159/1-995 Len: 1028 Check: 3220 Weight: 1.00 Name: ENSP00000429969/1-971 Len: 1028 Check: 4756 Weight: 1.00 Name: bmy_04484T0/1-640 Len: 1028 Check: 8834 Weight: 1.00 Name: BACU004460/1-857 Len: 1028 Check: 9126 Weight: 1.00 Name: ENSBTAP00000027416/1-999 Len: 1028 Check: 2676 Weight: 1.00 // 1 50 ENSTTRP00000006159/1-995 MGVAGLGCPW AARALLPLLL ---PLLLTA- AVPPGWGRAT GPPEDVDECA ENSP00000429969/1-971 MGVAGRNRPG AAWAVLLLLL LLPPLLLLAG AVPPGRGRAA GPQEDVDECA bmy_04484T0/1-640 ---------- ---------- ---------- ---------- ----DVDECA BACU004460/1-857 ---------- ---------- ---------- ---------- ----DVDECA ENSBTAP00000027416/1-999 MGVAGRGCPR AAPALLLLLL LLLLLLLTA- AVPPYRGRAE GPPEDVDECA 51 100 ENSTTRP00000006159/1-995 QGLDDCHTNA LCQNTPTSYK CSCRPGYQGE GRQCEDIDEC ENELNGGCVH ENSP00000429969/1-971 QGLDDCHADA LCQNTPTSYK CSCKPGYQGE GRQCEDIDEC GNELNGGCVH bmy_04484T0/1-640 QGLDDCHTNA LCQNTPTSYK CSCRPGYQGE GRQCEDIDEC ENELNGGCVH BACU004460/1-857 QGLDDCHTNA LCQNTPTSYK CSCRPGYQGE GRQCEDIDEC ENELNGGCVH ENSBTAP00000027416/1-999 QGLDDCHINA LCENTPTSYK CSCRPGYQGE GRQCEDIDEC ENELNGGCVH 101 150 ENSTTRP00000006159/1-995 DCLNIPGNYR CTCFDGFMLA HDGHNCLXXX XXXXXXXXXX XXXXXXXXXX ENSP00000429969/1-971 DCLNIPGNYR CTCFDGFMLA HDGHNCLDVD ECLENNGGCQ HTCVNVMGSY bmy_04484T0/1-640 DCLNIPGNYR CTCFDGFMLA HDGHNCLDVD ECLENNGGCQ HTCVNVMGSY BACU004460/1-857 DCLNIPGNYR CTCFDGFMLA HDGHNCLDVD ECLENNGGCQ HTCVNVMGSY ENSBTAP00000027416/1-999 DCLNIPGNYR CTCFDGFMLA HDGHNCLDVD ECLENNGGCQ HTCLNVMGSY 151 200 ENSTTRP00000006159/1-995 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000429969/1-971 ECCCKEGFFL SDNQHTCIHR SEEGLSCMNK DHGCSHICKE APRGSVACEC bmy_04484T0/1-640 ECRCKEGFFL SDNQHTCIHR SEEGLSCMNK NHGCSHICKE APRGSVACEC BACU004460/1-857 ECRCKEGFFL SDNQHTCIHR SEEGLSCMNK NHGCSHICKE APRGSVACEC ENSBTAP00000027416/1-999 ECRCQEGFFL SDNQHTCIHR SEEGLSCMNK NHGCSHICME APKGSVACEC 201 250 ENSTTRP00000006159/1-995 XXXXXXXXXX XXXXXTCNHG NGGCHHSCED TAAGPECSCH PQYKMHTDGR ENSP00000429969/1-971 RPGFELAKNQ RDCILTCNHG NGGCQHSCDD TADGPECSCH PQYKMHTDGR bmy_04484T0/1-640 RPGFELAKNQ RDCTLTCNHG NGGCHHSCED TAEGPECSCH PQYKMHTDGR BACU004460/1-857 RPGFELAKNQ RDCTY----- ---------- ---------- ---------- ENSBTAP00000027416/1-999 RPGFELAKNQ RDCILTCNHG NGGCQHSCED TAEGPECSCH PRYKMHSDGR 251 300 ENSTTRP00000006159/1-995 SCLEREDAAL EVMESNATSM ADGDKRVKRR LLMETCAVNN GGCDRTCKDT ENSP00000429969/1-971 SCLEREDTVL EVTESNTTSV VDGDKRVKRR LLMETCAVNN GGCDRTCKDT bmy_04484T0/1-640 SCLEREDAAP EVMESNATSV ADGDKRVKRR LLMETCAVNN GGCDRTCKDT BACU004460/1-857 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027416/1-999 SCLEREDIAL EVMESNTTSV ADGDKRVKRR LLMETCAVNN GGCDRTCKDT 301 350 ENSTTRP00000006159/1-995 STGVHCSCPV GFSLQLDGKT CKDIDECQTR NGGCDHFCKN TVGSFDCSCK ENSP00000429969/1-971 STGVHCSCPV GFTLQLDGKT CKDIDECQTR NGGCDHFCKN IVGSFDCGCK bmy_04484T0/1-640 STGVHCSCPV GFSLQLDGKT CKDIDECQTX NGGCDHFCKN TVGSFDCSCK BACU004460/1-857 ---------- ---------- ---IDECQTR NGGCDHFCKN TVGSFDCSCK ENSBTAP00000027416/1-999 STGVHCSCPV GFTLQMDGKT CKDIDECQTR NGGCDHFCRN TVGSFDCSCK 351 400 ENSTTRP00000006159/1-995 KGFKLLTDEK SCQDVDECSL DRTCDHSCIN HPGTFACACN KGYTLYGFTH ENSP00000429969/1-971 KGFKLLTDEK SCQDVDECSL DRTCDHSCIN HPGTFACACN RGYTLYGFTH bmy_04484T0/1-640 KGFKLLTDEK SCQDVDECSL DRTCDHSCIN HPGTFACACN KGYTLYGFTH BACU004460/1-857 KGFKLLTDEK SCQDVDECSL DRTCDHSCIN HPGTFACACN KGYTLYGFTH ENSBTAP00000027416/1-999 KGFKLLTDEK SCQDVDECSL DRTCDHSCIN HPGTFTCACS EGYTLYGFTH 401 450 ENSTTRP00000006159/1-995 CGDTNECSVN NGGCQQVCVN TVGSYECRCH SAHKLHWNKK DCVEVERVLP ENSP00000429969/1-971 CGDTNECSIN NGGCQQVCVN TVGSYECQCH PGYKLHWNKK DCVEVKGLLP bmy_04484T0/1-640 CGDTNECSVN NGGCQQVCVN TVGSYECRCH SAHKLHWNKK DCVEVEGVLP BACU004460/1-857 CGDTNECSVN NGGCQQVCVN TVGSYECRCH SAHKLHWNKK DCVEVEGVLP ENSBTAP00000027416/1-999 CGDTNECSVN NGGCQQVCVN TVGSYECHCH SGYKLHWNKK DCVEVKGGLP 451 500 ENSTTRP00000006159/1-995 TSVSPHVSLQ CGKSGGGDRC FLRCLSGIHL S--------- ---------- ENSP00000429969/1-971 TSVSPRVSLH CGKSGGGDGC FLRCHSGIHL SSGLQGAYSV TCGSSSPLRN bmy_04484T0/1-640 TSVSPHVSLQ CGKSGGGDRC FLRCLSGIHL S--------- ---------- BACU004460/1-857 TSVSPHVSLQ CGKSGGGDRC FLRCLSGIHL SSGNISHLFL S--------- ENSBTAP00000027416/1-999 TSLSPHVSLQ CGKSGGGDRC FLRCHSGIHL SP-------- ---------- 501 550 ENSTTRP00000006159/1-995 ---------- SDVATVRTSV TFKLNEGKCS LKKADLFPEG LRPVLPEKHS ENSP00000429969/1-971 KQQKSNDSAF GDVTTIRTSV TFKLNEGKCS LKNAELFPEG LRPALPEKHS bmy_04484T0/1-640 ---------- SDVATVRTSV TFKLNEGKCS LKKADLFPEG LRPVLPEKHS BACU004460/1-857 ---------- EDVATVRTSV TFKLNEGKCS LKKADLFPEG LRPVLPEKHS ENSBTAP00000027416/1-999 ---------- EDVATVRTSV TFKLNEGKCS LKKAELFPEG LRPVLPEKHS 551 600 ENSTTRP00000006159/1-995 SVKESFRYAN LTCSSGKQVP GAPGRPSTPK EMFITVEFEL ETNQKEVTAS ENSP00000429969/1-971 SVKESFRYVN LTCSSGKQVP GAPGRPSTPK EMFITVEFEL ETNQKEVTAS bmy_04484T0/1-640 SVKESFRYAN LTCSSGKQVP GAPGRPSTPK EMFITVEFEL ETNQKEVTAS BACU004460/1-857 SVKESFRYAN LTCSSGKQVP GAPGRPSTPK EMFITVEFEL ETNQKEVTAS ENSBTAP00000027416/1-999 SVKESFRYAN LTCSSGKQVP GGPGRPNAPK EMFITVEFEL ETNQKEVTVS 601 650 ENSTTRP00000006159/1-995 CDPSCIIKRT EKRLRKAIRT LRKAAHREQF HLQLSGVDLE VAKKSPQTSE ENSP00000429969/1-971 CDLSCIVKRT EKRLRKAIRT LRKAVHREQF HLQLSGMNLD VAKKPPRTSE bmy_04484T0/1-640 CDPSCIIKRT EKRLRKAIRT LRKAAHREQF HLQLSGVDLE VAKKSPQTSE BACU004460/1-857 CDPSCIIKRT EKRLRKAIRT LRKAAHREQF HLQLSGVDLE VAKKSPQTSE ENSBTAP00000027416/1-999 CDLSCIVKRT EKRLRKAIRT LRKAAHREQL HLQLSGVNLE VAKKSPRTSE 651 700 ENSTTRP00000006159/1-995 HWAESCGVGQ GHVGNQCXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000429969/1-971 RQAESCGVGQ GHAENQC--- ---------- ---------- ---------- bmy_04484T0/1-640 HWAESCGVGQ GHVGNQC--- ---------- ---------- ---------- BACU004460/1-857 HWAESCGVGQ GHVGNQCVSC RAGTYYDGVQ ERCILCPNGT FQNEEGQITC ENSBTAP00000027416/1-999 RQIESCAMGQ DHGGNQCVSC RAGTYYDGAQ ERCILCPNGT FQNEEGQITC 701 750 ENSTTRP00000006159/1-995 XXXXXXXXXX XXXXXXXXNA SECGGLCQPG EYSADGFAPC QLCALGTFQP ENSP00000429969/1-971 ---------- ---------- ----GLCQPG EYSADGFAPC HLCALGTFQP bmy_04484T0/1-640 ---------- ---------- ---------G EW-------- ---------- BACU004460/1-857 EPCPRPENPG ALETPEAWNA SECGGLCQPG EYSADGFAPC QLCALGTFQP ENSBTAP00000027416/1-999 EPCPRPGSPG TLKTPEAWNV SECGGLCQPG EYSADGFTPC QPCARGTFQP 751 800 ENSTTRP00000006159/1-995 EAGRTSCFPC GGGLLTKHLG ATSFQDCETR VQCSPGHFYN TTTHRCIRCP ENSP00000429969/1-971 EAGRTSCFPC GGGLATKHQG ATSFQDCETR VQCSPGHFYN TTTHRCIRCP bmy_04484T0/1-640 --------PA GRDILANR-- ---------- ---------- ---------- BACU004460/1-857 EAGRTSCFPC GGGLLTKHLG ATSFQDCETR VQCSPGHFYN TTTHRCIRCP ENSBTAP00000027416/1-999 EAGRTSCFPC GGGLPTKHPG ATSFQDCETR VQCSPGHFYN TTTHRCIRCP 801 850 ENSTTRP00000006159/1-995 AGTYQPEFGK NNCVSCPGNT TTDFDGSTNI TQCKNRRCGG ELGDFTGYIE ENSP00000429969/1-971 VGTYQPEFGK NNCVSCPGNT TTDFDGSTNI TQCKNRRCGG ELGDFTGYIE bmy_04484T0/1-640 ---------- ---------- --------TV LSSKNTK--- ---------- BACU004460/1-857 AGTYQPEFGK NNCVSCPGNT TTDFDGSTNI TQCKNRRCGG ELGDFTGYIE ENSBTAP00000027416/1-999 AGTYQPEFGK NHCVSCPGNT TTDFDGSTNI TQCKNRRCGG ELGDFTGYIE 851 900 ENSTTRP00000006159/1-995 SPNYPGNYPA NTECTWTINP PPKRRILIVV PEIFLPIEDD CGDYLVMRKT ENSP00000429969/1-971 SPNYPGNYPA NTECTWTINP PPKRRILIVV PEIFLPIEDD CGDYLVMRKT bmy_04484T0/1-640 ---------G NQKQVWPILS PQA------- ---------- ---------- BACU004460/1-857 SPNYPGNYPA NTECTWTINP PPKRRILIVV PEIFLPIEDD CGDYLVMRKT ENSBTAP00000027416/1-999 SPNYPGNYPA NTECTWTINP PPKRRILIVV PEIFLPIEDD CGDYLVMRKT 901 950 ENSTTRP00000006159/1-995 ASSNSVTTYE TCQTYERPIA FTSRSKKLWI QFKSNEGNSA RGFQVPYVTY ENSP00000429969/1-971 SSSNSVTTYE TCQTYERPIA FTSRSKKLWI QFKSNEGNSA RGFQVPYVTY bmy_04484T0/1-640 ---------- ---------- ---------- ---------- ---------- BACU004460/1-857 ASSNSVTTYE TCQTYERPIA FTSRSKKLWI QFKSNEGNSA RGFQVPYVTY ENSBTAP00000027416/1-999 ASSNSVTTYE TCQTYERPIA FTSRSKRLWI QFKSNEGNSA RGFQVPYVTY 951 1000 ENSTTRP00000006159/1-995 DEDYQELIED IVRDGRLYAS ENHQEILKDK KLIKALFDVL AHPQNYFKYT ENSP00000429969/1-971 DEDYQELIED IVRDGRLYAS ENHQEILKDK KLIKALFDVL AHPQNYFKYT bmy_04484T0/1-640 ---------- --------SS REH------- ---------L GHPH------ BACU004460/1-857 DEDYQELIED IVRDGRLYAS ENHQEILKDK KLIKALFDVL AHPQNYFKYT ENSBTAP00000027416/1-999 DEDYQELIED IVRDGRLYAS ENHQEILKDK KLIKALFDVL AHPQNYFKYT 1001 1050 ENSTTRP00000006159/1-995 AQESREMFPR SFIRLLRSKV SRFLRPYK ENSP00000429969/1-971 AQESREMFPR SFIRLLRSKV SRFLRPYK bmy_04484T0/1-640 ---------- ---------- -------- BACU004460/1-857 AQESREMFPR SFIRLLRSKV SRFLRPYK ENSBTAP00000027416/1-999 AQESREMFPR SFIRLLRSKV SRFLRPYK