KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:32:30 2014 Check: 00 .. Name: ENSP00000205214/1-1098 Len: 1206 Check: 922 Weight: 1.00 Name: ENSBTAP00000027426/1-1106 Len: 1206 Check: 1008 Weight: 1.00 Name: ENSTTRP00000010344/1-1100 Len: 1206 Check: 6143 Weight: 1.00 Name: BACU000665/1-906 Len: 1206 Check: 7714 Weight: 1.00 Name: bmy_15135T0/1-1101 Len: 1206 Check: 2529 Weight: 1.00 // 1 50 ENSP00000205214/1-1098 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027426/1-1106 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010344/1-1100 ---------- ---------- ---------- ---------- ---------- BACU000665/1-906 MKGYDSNRVN FKVLANPVQN PARPDQKSET RAGSKAANTS LPLAPQLREG bmy_15135T0/1-1101 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000205214/1-1098 ---------- ---------- ---------- ---------- -------MTL ENSBTAP00000027426/1-1106 ---------- ---------- ---------- ---------- -------MTL ENSTTRP00000010344/1-1100 ---------- ---------- ---------- ---------- -------MTL BACU000665/1-906 AGQKDAACPG SLVLTSARRR ETFLGTREYG GLREFSATSD VQINFSEMTL bmy_15135T0/1-1101 ---------- ---------- ---------- ---------- -------MTL 101 150 ENSP00000205214/1-1098 QELVHKAASC YMDRVAVCFD ECNNQLPVYY TYKTVVNAAS ELSNFLLLHC ENSBTAP00000027426/1-1106 QELVHQAASL YSDKIAVCFD ECNNQPPVYY TYKTVIHAAS ALSNFLLLHC ENSTTRP00000010344/1-1100 QELVHQAASR YSDKIAVCFD ECNNQPPVYY TYKTVVNAAS ELSNFLLLHC BACU000665/1-906 QELVHQAASR YSDKIAVCFD ECNNQPPVYY TYKTVVNAAS ELSNFLLLHC bmy_15135T0/1-1101 QELVHQAASH YSDKIAVCFD ECNNQPPVYY TYKTVVDAAS ELSNFLLLHC 151 200 ENSP00000205214/1-1098 DFQGIREIGL YCQPGIDLPS WILGILQVPA AYVPIEPDSP PSLSTHFMKK ENSBTAP00000027426/1-1106 EFQGIREIGL YCHPTINLPS WILGILQVPA AYVPVDPDSP PALSVHFMKK ENSTTRP00000010344/1-1100 DFQGIREIGL YCHPGINLPS WILGILQVPA AYAPIDPDSP PALSIHFMKK BACU000665/1-906 DFQGIREIGL YCHPGINLPS WILGILQVPA AYAPIDPDSP PALSIHFMKK bmy_15135T0/1-1101 DFQGIREIGL YCHPGINLPS WILGILQVPA AYAPIDPDSP PALSIHFMKK 201 250 ENSP00000205214/1-1098 CNLKYILVEK KQINKFKSFH ETLLNYDTFT VEHNDLVLFR LHWKNTEVNL ENSBTAP00000027426/1-1106 CNLKYILVEK VHISKFKSSY EALLNYDMLK VEHNDLVLFR LHWKNVEVSL ENSTTRP00000010344/1-1100 CNLKYVLVEK QQINKFKSSC ETLLNYDTFT VEHNDLVLFR LHWKNVEVSL BACU000665/1-906 CNLKYILVEK QQINKFRSSY ETLLNYDVFT VEHNDLVLFR LHWKNVEVSL bmy_15135T0/1-1101 CNLKYILVEK QQINKFKSSY ETLLNYDMFT VEHNDLVLFR LHWKNVEVSL 251 300 ENSP00000205214/1-1098 MLND--GKEK YEKEKI-KSI SSEHVNEEKA EEHMDLRLKH CLAYVLHTSG ENSBTAP00000027426/1-1106 VLND--RKEK YEKGKMPKSM HSESSSEEKS EEHMDMRQKH CLAYVLHTSG ENSTTRP00000010344/1-1100 MLNDSIRRET YEKEKMTKSV NSENSSEEKL EEHMDVRLKH CLAYVLHTSG BACU000665/1-906 MLNNSIRRET YEKEKMTKSM NSENSSKEKS EEHMDVRLKH CLAYVLHTSG bmy_15135T0/1-1101 MLNNSIRRET YEKEKMTESM NSENSSEEKS EEHMDVRLKH CLAYVLHTSG 301 350 ENSP00000205214/1-1098 TTGIPKIVRV PHKCIVPNIQ HFRVLFDITQ EDVLFLASPL TFDPSVVEIF ENSBTAP00000027426/1-1106 TTGIPKIVRV PHACIVPNIQ HFRVLFEITH EDVLFLASPL TFDPSVVEIF ENSTTRP00000010344/1-1100 TTGIPKIVRV PHACIVPNIQ HFRVLFEITQ EDVLFLASPL TFDPSVVEIF BACU000665/1-906 TTGIPKIVRV PHACIVPNIQ HFRVLFEITQ EDVLFLASPL TFDPSVVEIF bmy_15135T0/1-1101 TTGIPKIVRV PHACIVPNIQ HFRVLFEITQ EDVLFLASPL TFDPSVVEIF 351 400 ENSP00000205214/1-1098 LALSSGASLL IVPTSVKLLP SKLASVLFSH HRVTVLQATP TLLRRFGSQL ENSBTAP00000027426/1-1106 VALSSGASLL IVPTSVKMVP SKLAAVLFSH HRVTILQATP TLLRRFGSQL ENSTTRP00000010344/1-1100 VALSSGASLL IVPTSVKVLP SKLAAVLFSH HRVTILQATP TLLRRFGSQL BACU000665/1-906 VALSSG---- ---------- ---------- ---------- ---------- bmy_15135T0/1-1101 VALSSGASLL IVPTSVKVLP SKLAAVLFSH HRVTILQATP TLLRRFGSQL 401 450 ENSP00000205214/1-1098 IKSTVLSATT SLRVLALGGE AFPSLTVLRS WRGEGNKTQI FNVYGITEVS ENSBTAP00000027426/1-1106 IKSTVLSAST SLRILALGGE AFPSLTVLKS WRGVGNKTQI FNIYGITEVS ENSTTRP00000010344/1-1100 IKSTVLSTNT SLRVLALGGE AFPSLTVLKS WRGIGNKTQI FNVYGITEVS BACU000665/1-906 ---------- ---------- ---------- ---------- ---------- bmy_15135T0/1-1101 IKSTVLSTNT SLRVLALGGE AFPSLTVLKS WRGIGNKTQI FNVYGITEVS 451 500 ENSP00000205214/1-1098 SWATIYRIPE KTLNSTLKCE LPVQLGFPLL GTVVEVRDTN GFTIQEGSGQ ENSBTAP00000027426/1-1106 SWATFYRIPE KILNSTLKCE LPVQLGFPLL GTVVEVRDTN GFTIQEGNGQ ENSTTRP00000010344/1-1100 SWATFYRIPE KILNSTLKCD LPVQLGFPLL GTVVEVKDTN GFTVQEGNGQ BACU000665/1-906 ---------- ---------- ---------- ---------- ---------- bmy_15135T0/1-1101 SWATFYRIPE KILNSTLKCE LPVQLGFPLL GTVVEVKDTN GFTVQEGNGQ 501 550 ENSP00000205214/1-1098 VFLGGRNRVC FLDDEVTVPL GTMRATGDFV TVKDGEIFFL GRKDSQIKRH ENSBTAP00000027426/1-1106 VFLGGRNRVC FLDGEVTVPL GTMRATGDFV TIKDGEIFFL GRKDSQIKRH ENSTTRP00000010344/1-1100 VFLGGRNRVC FLDDEMTVPL GTMRATGDFV TIKDGEIFFL -RKDSQIKRH BACU000665/1-906 ----GRNRVC FLDDEMTVPL GTMRATGDFV TIKDGEIFFL GRKDSQIKRH bmy_15135T0/1-1101 VFLGGRNRVC FLDDEMTVPL GTMRATGDFV TIKDGEIFFL GRKDSQIKRH 551 600 ENSP00000205214/1-1098 GKRLNIELVQ QVAEELQQVE SCAVTWYNQE KLILFMVSKD ASVKEYIFKE ENSBTAP00000027426/1-1106 GKRLNIELVQ QIAEGLQQVE SCAVTWYNQE KLILFMVTKN DLVKDHIFEE ENSTTRP00000010344/1-1100 GKRLNIELVQ QXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU000665/1-906 GKRLNIELVQ Q--------- ---------- ---------- ---------- bmy_15135T0/1-1101 GKRLNIELVQ QVAEGLQQVE SCAVTWYNQE KLILFTVSKN DLVKDYIFKE 601 650 ENSP00000205214/1-1098 LQKYLPSHAV PDELVLIDSL PFTSHGKIDV SELNKIYLNY INLKSENKLS ENSBTAP00000027426/1-1106 LQKHLPSHAI PDELVLINSL PFTSHGKIDV SELNKIYLNY RDLKSECKLS ENSTTRP00000010344/1-1100 XXXXXXXXXX XXXXXXXXXX XXXXXXKIDV SELNKIYLNS INLKSECKLN BACU000665/1-906 ---------- ---------- ---------- ---------- ---------- bmy_15135T0/1-1101 LQKHLPSHAI PDELVLIDSL PFTSHGKIDV SELNKIYLNS IDLKSECKLN 651 700 ENSP00000205214/1-1098 GKEDLWEKLQ YLWKSTLNLP EDLLRVPDES LFLNSGGDSL KSIRLLSEIE ENSBTAP00000027426/1-1106 GKEELWEKLH HLWKSVLSLS EDALKIPDES LFLNSGGDSL KSIRLLNEIE ENSTTRP00000010344/1-1100 GKEELWEKLH HLWKSVLSLS EDPLKVPDES LFLNSGGDSL KSIRLLNEIE BACU000665/1-906 ---------- ----SVLSLS EDPLEVPDES LFLNSGGDSL KSIRLLNEIE bmy_15135T0/1-1101 GKEELWEKLH HLWKSVLSLS EDPLKVPDES LFLNSGGDSL KSIRLLNEIE 701 750 ENSP00000205214/1-1098 KLVGTSVPGL LEIILSSSIL EIYNHILQTV VPDEDVTFRK SCATKRKLSD ENSBTAP00000027426/1-1106 NLVGTSVPGL LEIILSSSIL RIYNHILQTV FSDKDMTLSK NHAMKRKF-N ENSTTRP00000010344/1-1100 NLVGTAVPGL LEIILSSSIL EIYNHILQTV FPDEDLTFSK NYSTKRKSSD BACU000665/1-906 NLVGTSVPGL LEIILSSSIL EIYNHILQTV LPDEDLTFSK KYATKRKYSD bmy_15135T0/1-1101 NLVGTSVPGL LDIILSSSIL EIYNHILQTV FPDEDLTFSK NYATKRKFSD 751 800 ENSP00000205214/1-1098 INQEEASGTS LHQKAIMTFT CHNEINAFVV LSRGSQILSL NSTRFLTKLG ENSBTAP00000027426/1-1106 VTQEETSGKS LHQETVMPLN CDKEIDAFIA LSRGNQILSL NTDKYLTKLG ENSTTRP00000010344/1-1100 VNQEETSGKS LHQESVMPLN CDNEINAFIA LSRGSQILSL NTTRFLTKLE BACU000665/1-906 VNQEETSGKS LHQESVMPLN CDSEINAFIA LSRGSQILSL KTTRFLTKLE bmy_15135T0/1-1101 VNQEETSGKS LHQESVMPLN CDNEINAFIA LSRGSQILSL NTTRFLTKLE 801 850 ENSP00000205214/1-1098 HCSSACPSDS VSQTNIQNLK GLNSPVLIGK SKDPSCVAKV SEEGKPAIGT ENSBTAP00000027426/1-1106 HCPSTYSSDL NSQTDIQNRE SLNTPPLIGK SEDPSCVVEV SEEETPVIRA ENSTTRP00000010344/1-1100 HCPSACSSDI ISQTNIQNMK SLNPPALIGK SKDMSCVAKV SEEETSVMGA BACU000665/1-906 HCPSAYSSDL ISQTNIQNMK SLNPPALIGK SKDTSCVAEV SEEETSVMGA bmy_15135T0/1-1101 HCPAAYSSDL ISQTNIQNMK SLNPPALIGK SKDMSCVAEV SEEETSVMGA 851 900 ENSP00000205214/1-1098 QKMELHVRWR SDTGKCVDAS PLVVIPTFDK SSTTVYIGSH SHRMKAVDFY ENSBTAP00000027426/1-1106 EKMEFRVRWR SDTGKCVDAS PLVVIPAIDK SSATVYIGSH SHRMIAVDLY ENSTTRP00000010344/1-1100 EKMEFHVRWR SDTGKCVDAS PLLVIPAVDK SSATVYIGSH SHRMMAVDLY BACU000665/1-906 EKMEFHVRWR SDTGKCVDAS PLVVIPAVDK SSATVYIGSH SHRMMAVDLY bmy_15135T0/1-1101 EKMEFRVRWR SDTGKCVDAS PLVVIPAVDK SSATVYIGSH SHRMMAVDLY 901 950 ENSP00000205214/1-1098 SGKVKWEQIL GDRIESSACV SKCGNFIVVG CYNGLVYVLK SNSGEKYWMF ENSBTAP00000027426/1-1106 SGKVKWEQIL GDRIESSACV SKCGNFIVVG CYNGLVYVLK SNSGEKYWMF ENSTTRP00000010344/1-1100 SGKVKWEQIL GDRIESSACV SKCGNFIVVG CYNGLVYILK SNSGEKYWMF BACU000665/1-906 SGKVKWEQIL GDRIESSACV SKCGNFIVVG CYNGLVYILK SNSGEKYWMF bmy_15135T0/1-1101 SGKVKWEQIL GDRIESSACV SKCGNFIVVG CYNGLVYILK SNSGEKYWMF 951 1000 ENSP00000205214/1-1098 TTEDAVKSSA TMDPTTGLIY IGSHDQHAYA LDIYRKKCVW KSKCGGTVFS ENSBTAP00000027426/1-1106 STEDAVKSSA TMDPTTGLLY IGSHDQHAYA LDIYKKKCVW KLKCGGTVFS ENSTTRP00000010344/1-1100 TTDDAVKSSA TVDPTTGLFY IGSHDQHAYA LDIYXXXXXX XXXXXXXXXX BACU000665/1-906 TTEDAVKSSA TVDPTTGLFY IGSHDQHAYA LDIY------ ---------- bmy_15135T0/1-1101 TTEDAVKSSA TVDPTTGLFY IGSHDQHAYA LDVYKKKCVW KLKCGGTVFS 1001 1050 ENSP00000205214/1-1098 SPCLNLIPHH LYFATLGGLL LAVNPATGNV IWKHSCGKPL FSSPQCCSQY ENSBTAP00000027426/1-1106 SPCLSLIPSH LYFATLGGLL LAINPATGDR LWKHSCGKPL FSSPRCCLQY ENSTTRP00000010344/1-1100 XXXXXXXXXX XXXXXXXXXX XXXXXATGKI VWKHSCGKPL FSSPRCCLQY BACU000665/1-906 ---------- ---------- -----ATGKR VWKHSCGKPL FSSPRCCLQY bmy_15135T0/1-1101 SPCLSLIPYH LYFATLGGLL LAINPATGKR VWKHSCGKPL FSSPRCCLQY 1051 1100 ENSP00000205214/1-1098 ICIGCVDGNL LCFTHFGEQV WQFSTSGPIF SSPCTSPSEQ KIFFGSHDCF ENSBTAP00000027426/1-1106 VFIGCVDGNL LCFTHFGEQV WQFSTNEPIF SSPCTSASEQ EIFFGSHDCF ENSTTRP00000010344/1-1100 ICIGCVDGNF LCFTHFGEQI WQFSTNGPIF SSPCTSASEQ EIFFGSHDCF BACU000665/1-906 ICIGCVDGNF LCFTHFGEQI WQFSTNEPIF SSPCTSASEQ EIFFGSHDCF bmy_15135T0/1-1101 ICIGCVDGNF LCFTHFGEQI WQFSTHEPIF SSPCTSASEQ EIFFGSHDCF 1101 1150 ENSP00000205214/1-1098 IYCCNMKGHL QWKFETTSRV YATPFAFHNY NGSNEMLLAA ASTDGKVWIL ENSBTAP00000027426/1-1106 IYCCSMKGHL QWKFETTSRV YSTPFVFRNH NHNSEMLLAA ASTDGKLWIL ENSTTRP00000010344/1-1100 IYCCSMKGHL QWKFETTSRV YSTPFAFHNH SRGNEVLLAA ASTDGKLWIL BACU000665/1-906 IYCCSMKGHL QWKFETTSRV YSTPFAFHNH NRGNEMLLAA ASTDGKLWIL bmy_15135T0/1-1101 IYCCSMKGHL QWKFETTSRV YSTPFAFHNH NHGNEMLLAA ASTDGKLWIL 1151 1200 ENSP00000205214/1-1098 ESQSGQLQSV YELPGEVFSS PVVLESMLII GCRDNYVYCL DLLG--GNQK ENSBTAP00000027426/1-1106 ESKSGQLQSV YELPGEVFSS PVVWESMLII GCRNNYVYCL DVLGDKGNEV ENSTTRP00000010344/1-1100 ESKSGELQSV YQLPGEVFSS PVVWESMLII GCRNNYVYCL DLLG--GNQR BACU000665/1-906 ESKSGELQSV YQLPGEVFSS PVVWESMLII GCRNNYVYCL DLLG--GNQR bmy_15135T0/1-1101 ESKSGELQSV YQLPGEVFSS PVVWESMLII GCRNNYVYCL DLLG--GNQR 1201 1250 ENSP00000205214/1-1098 ------ ENSBTAP00000027426/1-1106 QSLEYT ENSTTRP00000010344/1-1100 ------ BACU000665/1-906 ------ bmy_15135T0/1-1101 ------