KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:32:32 2014 Check: 00 .. Name: ENSP00000313158/1-744 Len: 750 Check: 1555 Weight: 1.00 Name: bmy_13422T0/1-570 Len: 750 Check: 6261 Weight: 1.00 Name: ENSBTAP00000027448/1-742 Len: 750 Check: 8465 Weight: 1.00 Name: BACU006205/1-739 Len: 750 Check: 8056 Weight: 1.00 Name: ENSTTRP00000011243/1-739 Len: 750 Check: 205 Weight: 1.00 // 1 50 ENSP00000313158/1-744 MQKEMKMIKD EDVHFDLAVK KTPSFPHCLQ PVASRGKAPQ RHPFPEALRG bmy_13422T0/1-570 MQKEMKMVKD EDVHFSLGAK RAPSFPHGLQ PVVSRGRAPP RHPFPEALRG ENSBTAP00000027448/1-742 MQKELKMVKD EDVHFSLGVK RAPSFPHGLQ PVVSRGKAPP GHPFPEALRG BACU006205/1-739 MQKEMKMVKD EDVHFSLGAK RGPSFPHGLQ PVVSRGRAPP RHPFPEALRG ENSTTRP00000011243/1-739 MQKEMKMVKD EGVHFSLGAK RAPSFPHGLQ PVVSRGRAPP RHPFPEALRG 51 100 ENSP00000313158/1-744 PFSQFRYEPP PGDLDGFPGV FEGAGSRKRK SMPTKMPYNH PAEEVTLALH bmy_13422T0/1-570 PFSQFRYEPP PGDLDGFPGV FEGGGSRKRK SMPTKMPYNH PSEEAALALH ENSBTAP00000027448/1-742 PFSQFRYEPP PGELDGYPGV FEGGGSRKRK SMPTKMPYNH PAEEGALGLH BACU006205/1-739 PFSQFRYEPP PGDLDGFPGV FEGGGSRKRK SMPTKMPYNH PSEEAALALH ENSTTRP00000011243/1-739 PFSQFRYEPP PGDLDGFPGV FEGGGSRKRK SMPTKMPYNH PSEEAALALH 101 150 ENSP00000313158/1-744 SEENKNHGLP NLPLLF---- -PQPPRPKYD SQMIDLCNVG FQFYRSLEHF bmy_13422T0/1-570 PEESKNPGPP ELRLLL-PPP PPPPPRPKYD SRMIDLCNVG FQFYRSLEHL ENSBTAP00000027448/1-742 PEESKNPGVP DLPLLF---P PPPPPRPKYD SRMIDLCNVG FQFYRSLEHL BACU006205/1-739 PEESRSPGPP ELRLLLPPPP PPPPPRPKYD SRMIDLCNVG FQFYRSLEHL ENSTTRP00000011243/1-739 PEESKNPGPP ELRLLF---- -PPPPRPKYD SRMIDLCNVG FQFYRSLEHL 151 200 ENSP00000313158/1-744 GGKPVKQEPI KPSAVWPQPT PTPFLPTPYP YYPKVHPGLM FPFFVPSSSP bmy_13422T0/1-570 GGKAVKQEPV KPRATWPAPT PPPFLPTPYP YYPKVPPGLV FPFFVPSASP ENSBTAP00000027448/1-742 GGKAVKQEPV KPSAVWPAPA APPFLPAPYP YYPKVAPGLV FPFFVPSASP BACU006205/1-739 GGKAVKQEPV KPSATWPAPT PPPFLPTPYP YYPKVPPGLV FPFFVPSASP ENSTTRP00000011243/1-739 GGKAVKQEPV KPSATWAAP- -PPFLPTPYP YYPKVPPGLV FPFFVPSASP 201 250 ENSP00000313158/1-744 FPFSRHTFLP KQPPEPLLPR KAEPQESEET KQKVERVDVN VQIDDSYYVD bmy_13422T0/1-570 FPFSRHTFLP KRPPEPLLPR KAEPRESEET KQKVERVDVN VQIDDSYYVD ENSBTAP00000027448/1-742 FPFSRHTFLP KRPPEPPLPR KAEPPESEET KQKVERVDVN VQIDDSYYVD BACU006205/1-739 FPFSRHTFLP KRPPEPLLPR KAEPRESEET KQKVERVDVN VQIDDSYYVD ENSTTRP00000011243/1-739 FPFSRHTFLP KRPPEPLLPR KAEPRESEET KQKVERVDVN VQIDDSYYVD 251 300 ENSP00000313158/1-744 VGGSQKRWQC PTCEKSYTSK YNLVTHILGH SGIKPHACTH CGKLFKQLSH bmy_13422T0/1-570 VGGAQKRWQC PTCEKSYTSK YNLVTHILGH SGIKPHACSR CGKLFKQLSH ENSBTAP00000027448/1-742 VGGAQKRWQC PTCEKSYTSK YNLVTHILGH SGIKPHACSR CGKLFKQLSH BACU006205/1-739 VGGAQKRWQC PTCEKSYTSK YNLVTHILGH SGIKPHACSR CGKLFKQLSH ENSTTRP00000011243/1-739 VGGAQKRWQC PTCEKSYTSK YNLVTHILGH SGIKPHACSR CGKLFKQLSH 301 350 ENSP00000313158/1-744 LHTHMLTHQG TRPHKCQVCH KAFTQTSHLK RHMMQHSEVK PHNCRVCGRG bmy_13422T0/1-570 LHTHMLTHQG TRPHKCQVCH KAFTQTSHLK RHMMQHSEVK PHSCRVCGRG ENSBTAP00000027448/1-742 LHTHMLTHQG TRPHKCQVCH KAFTQTSHLK RHMMQHSEVK PHNCRVCGRG BACU006205/1-739 LHTHMLTHQG TRPHKCQVCH KAFTQTSHLK RHMMQHSEVK PHNCRVCGRG ENSTTRP00000011243/1-739 LHTHMLTHQG TRPHKCQVCH KAFTQTSHLK RHMMQHSEVK PHNCRVCGRG 351 400 ENSP00000313158/1-744 FAYPSELKAH EAKHASGREN ICVECGLDFP TLAQLKRHLT THRGPIQYNC bmy_13422T0/1-570 FAYPSELKAH EAKHASGREN ICVECGLDFP TLAQLKRHLT THRGPIQYSC ENSBTAP00000027448/1-742 FAYPSELKAH EAKHASGREN ICVECGLDFP TLAQLKRHLT THRGPIQYNC BACU006205/1-739 FAYPSELKAH EAKHASGREN ICVECGLDFP TLAQLKRHLT THRGPIQYSC ENSTTRP00000011243/1-739 FAYPSELKAH EAKHASGREN ICVECGLDFP TLAQLKRHLT THRGPIQYSC 401 450 ENSP00000313158/1-744 SECDKTFQYP SQLQNHMMKH KDIRPYICSE CGMEFVQPHH LKQHSLTHKG bmy_13422T0/1-570 SECDKTFQYP SQLQNHMMKH KDIRPYICSE CGMEFVQPHH LKQHSLTHKG ENSBTAP00000027448/1-742 SECDKTFQYP SQLQNHMMKH KDIRPYICSE CGMEFVQPHH LKQHSLTHKG BACU006205/1-739 SECDKTFQYP SQLQNHMMKH KDIRPYICSE CGMEFVQPHH LKQHSLTHKG ENSTTRP00000011243/1-739 SECDKTFQYP SQLQNHMMKH KDIRPYICSE CGMEFVQPHH LKQHSLTHKG 451 500 ENSP00000313158/1-744 VKEHKCGICG REFTLLANMK RHVLIHTNIR AYQCHLCYKS FVQKQTLKAH bmy_13422T0/1-570 VKEHKCGICG REFTLLANMK RHVLIHTNIR AYQCHLCYKS FVQKQTLKAH ENSBTAP00000027448/1-742 VKEHKCGICG REFTLLANMK RHVLIHTNIR AYQCHLCYKS FVQKQTLKAH BACU006205/1-739 VKEHKCGICG REFTLLANMK RHVLIHTNIR AYQCHLCYKS FVQKQTLKAH ENSTTRP00000011243/1-739 VKEHKCGICG REFTLLANMK RHVLIHTNIR AYQCHLCYKS FVQKQTLKAH 501 550 ENSP00000313158/1-744 MIVHSDVKPF KCKLCGKEFN RMHNLMGHMH LHSDSKPFKC LYCPSKFTLK bmy_13422T0/1-570 MIVHSDVKPF KCKVGG---- ---------- ---------C L--------- ENSBTAP00000027448/1-742 MIVHSDVKPF KCKLCGKEFN RMHNLMGHMH LHSDSKPFKC LYCPSKFTLK BACU006205/1-739 MIVHSDVKPF KCKLCGKEFN RMHNLMGHMH LHSDSKPFKC LYCPSKFTLK ENSTTRP00000011243/1-739 MIVHSDVKPF KCKLCGKEFN RMHNLMGHMH LHSDSKPFKC LYCPSKFTLK 551 600 ENSP00000313158/1-744 GNLTRHMKVK HGVMERGLHS QGLGRGRIAL AQTAGVLRSL EQEEPFDLSQ bmy_13422T0/1-570 ---------- ---------- GGAWRGR--- AQRAVQMRRK NLQGTF---- ENSBTAP00000027448/1-742 GNLTRHMKVK HGVMERGLHS QGFGRGRIAL APTAGALRSL EQEEPFDLSQ BACU006205/1-739 GNLTRHMKVK HGVMERGLHS QGFGRGRIAL AQTAGGLRSL EQEEPFDLSQ ENSTTRP00000011243/1-739 GNLTRHMKVK HGVMERGLHS QGFGRGRVAG AQTAGGLRSL QQEEPFDLSQ 601 650 ENSP00000313158/1-744 KRRAKVPVFQ SDGESAQGSH CHEEEEEDNC YEVEPYSPGL APQSQQLCTP bmy_13422T0/1-570 ---------- ---------- ---------- YSVSSEGP-- ---------- ENSBTAP00000027448/1-742 KRRAKGPAFQ SDGESARGSS CHEEEDEDNC YEVEPDSPGL GPRGPPLCAP BACU006205/1-739 KRRAKGPAFQ SDGESARGSS CHEEEDDDNC YDVERDSPGL GP------AP ENSTTRP00000011243/1-739 RRRAKGPAFQ PDVESARGSS CHEEDDDDNC CEAGRDSPGL GPRSPPLCAP 651 700 ENSP00000313158/1-744 EDLSTKSEHA PEVLEEACKE EKEDASKGEW EKRSKGDLGA EGGQERDCAG bmy_13422T0/1-570 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027448/1-742 RDLSAKPEPG PGEEAPA--- -EEASPPGAR PLKSRDSLGP EGGPEREFAR BACU006205/1-739 QDLSAKPEPG PRADAQA--- -EGDAPPGDL QPKSRDSPRP EGGREREFAR ENSTTRP00000011243/1-739 QDLSAKADPG PRAEAQA--- -GEDAPQGDL QPKSRASPGP EGVRERGFAR 701 750 ENSP00000313158/1-744 RDECLS-LRA FQSTRRGPSF SDYLYFKHRD ESLKELLERK MEKQAVLLGI bmy_13422T0/1-570 -------LRL RVGLRPSPGL SAALCLSPP- ---------- ---------- ENSBTAP00000027448/1-742 RDERPG-LRV LPSTRRGPAF SDYLYFKHRD ESLKELLERK MEKQAVLLGI BACU006205/1-739 RDECPG-LRA LQSARRGPSF SDYLYFKHRD ESLKELLERK MEKQAVLLGI ENSTTRP00000011243/1-739 RDECPGLLRA LQSARRGPSF SDYLYFKHRD ESLKELLERK MEYQAVLLWI