KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:32:33 2014 Check: 00 .. Name: ENSP00000430950/1-403 Len: 415 Check: 9230 Weight: 1.00 Name: ENSBTAP00000027449/1-406 Len: 415 Check: 3442 Weight: 1.00 Name: ENSTTRP00000010422/1-405 Len: 415 Check: 9885 Weight: 1.00 Name: bmy_06098T0/1-208 Len: 415 Check: 7 Weight: 1.00 Name: BACU007441/1-282 Len: 415 Check: 3643 Weight: 1.00 // 1 50 ENSP00000430950/1-403 ----MAHAME NSWTISKEYH IDEEVGFALP NPQENLPDFY NDWMFIAKHL ENSBTAP00000027449/1-406 MAGDMSSPVE NSWTIFKEYH IDEDVGFALP YPLEDLPHPY DAWISIARNL ENSTTRP00000010422/1-405 MAPGNSSPVE TSWKIFEEYH IDEDVGFALP NPLEELPHPY DAWISIAKNL bmy_06098T0/1-208 MAPDKSSPVE NSWKIFEEYH IDEDVGFALP NPL------- ---------- BACU007441/1-282 ---------- ---------- ---------- ---EELPHPY DAWISIAKNL 51 100 ENSP00000430950/1-403 PDLIESGQLR ERVEKLNMLS IDHLTDHKSQ RLARLVLGCI TMAYVWGKGH ENSBTAP00000027449/1-406 PELIKNNQLR VEVEKLATLN IDGLRGHRAQ RLAHLVLGYI TMAYVWGQGD ENSTTRP00000010422/1-405 PELIKNGQLR AEVEKLTTFS IDGLQGHKLQ RLAHLVLGYI TMAYVWGEGD bmy_06098T0/1-208 ---------- -----LTTFS IDGLQGHKSQ RLAHLVLGYI TMAYVWGEGD BACU007441/1-282 PELIKNGQLR AEVEKLTTFS IDGLQGHKSQ RLAHLVLGYI TMAYVWGEGD 101 150 ENSP00000430950/1-403 GDVRKVLPRN IAVPYCQLSK KLELPPILVY ADCVLANWKK KDPNKPLTYE ENSBTAP00000027449/1-406 GDIRKVLPSN IAVPYCKLSE KLGLPPILLY ADCVLANWKK KDPNGPMTYE ENSTTRP00000010422/1-405 GDVRKVLPSN IAVPYCKVSE KLGLPPILVY ADCVLANWKK KDPSGYVN-T bmy_06098T0/1-208 GDVRKVLPSN IAVPYCKVSE KLGLPPILVY ADCVLANWKK KDP------- BACU007441/1-282 GDVRKVLPSN IAVPYCKVSE KLGLPPILVY ADCVLANWKK KDP------- 151 200 ENSP00000430950/1-403 NMDVLFSFRD GDCSKGFFLV SLLVEIAAAS AIKVIPTVFK AMQMQERDTL ENSBTAP00000027449/1-406 NMDILFSFPG GDCGKGFFLV SLLVEIAAAS AIKVIPSIFD AVQRKDSDTL ENSTTRP00000010422/1-405 NMDILFSFPG GDCGKGFFLV SLVVETAAAS AIKVIPIIFN AIQREDPDTL bmy_06098T0/1-208 ---------- ---------- ---------- ---------- ---------- BACU007441/1-282 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000430950/1-403 LKALLEIASC LEKALQVFHQ IHDHVNPKAF FSVLRIYLSG WKGNPQ---- ENSBTAP00000027449/1-406 QKALLEISSS LHKALEVFSQ IHKYVDPNLF FNVLRIYLSG WKGNPL---- ENSTTRP00000010422/1-405 RKALLDIASC LHKALEIFHQ IHEYVDPNLF FNVLRIYLSG WKGNPL---- bmy_06098T0/1-208 ---------- ---------- ---------- --------SG YVNSDYNRNE BACU007441/1-282 ---------- ---------- ---------- --------SG WKGNPL---- 251 300 ENSP00000430950/1-403 LSDGLVYEGF -WEDPKEFAG GSAGQSSVFQ CFDVLLGIQQ TAGG---GHA ENSBTAP00000027449/1-406 LSEGLLYEGV -WDTPKKFAG GSAAQSSIFQ CFDVLLGIQH SIGGVPADSA ENSTTRP00000010422/1-405 LSEGLLYEGV -WDTPKKFAG GSAAQSSIFQ CFDIVLGIQH TVGG---DSA bmy_06098T0/1-208 RSAHYLNQGV NMDILFSFPG GDCGKGFFLV SLVVETAAAS AIKVIPI--- BACU007441/1-282 LSEGLLYEGV -WDTPKKFAG GSAAQSSIFQ CFDILLGIQH TVGGVPSDSA 301 350 ENSP00000430950/1-403 AQFLQDMRRY MPPAHRNFLC SLESNPSVRE FVLSKGDAGL REAYDACVKA ENSBTAP00000027449/1-406 AEFLQEMRTY MPPAHHSFLL SLKSKPSVRE FVLSEGNATL QEIYNKCVQA ENSTTRP00000010422/1-405 AKFLQEMRTY MPSAHQNFLR SLESGPSVRK FVLSKGDATL QEIYNECVQA bmy_06098T0/1-208 --IFNAIQRE DPDTLQKALL DVTS------ -CLHKAHETF HQIHGKY--- BACU007441/1-282 AKFLQEMRTY MPSAHQNFLR SLESGPSVRK FVLSKGDATL QEIYNECVQA 351 400 ENSP00000430950/1-403 LVSLRSYHLQ IVTKYILIPA SQQPKENKTS EDPSKLEAKG TGGTDLMNFL ENSBTAP00000027449/1-406 MVSLRNYHLQ IVAKYIVIPA RQQPQVEENL EE----ENRG TGGTNVMDFL ENSTTRP00000010422/1-405 MVSLRNYHLQ VVAKYIVIPA SQHPREN-TS EEPSEPKNKG TGGTDFMGFL bmy_06098T0/1-208 ---------- ---------- ---------- ---------- ---------- BACU007441/1-282 MVSLRDYHLQ IVVKYIVIPA SRPSKKKQTS KEPSEPKSKG TGGTDIMDFL 401 450 ENSP00000430950/1-403 KTVRSTTEKS LLKEG ENSBTAP00000027449/1-406 KTVRSKTKNS LLKEE ENSTTRP00000010422/1-405 KTVRDTTVNS LLKED bmy_06098T0/1-208 ---------- ----- BACU007441/1-282 KTVRSTTVNS LLKED