KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:32:35 2014 Check: 00 .. Name: ENSP00000386710/1-839 Len: 925 Check: 6087 Weight: 1.00 Name: ENSTTRP00000009516/1-899 Len: 925 Check: 2653 Weight: 1.00 Name: ENSBTAP00000027461/1-839 Len: 925 Check: 6446 Weight: 1.00 Name: bmy_13376T0/1-775 Len: 925 Check: 7340 Weight: 1.00 Name: BACU012722/1-864 Len: 925 Check: 7895 Weight: 1.00 // 1 50 ENSP00000386710/1-839 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009516/1-899 DSEWQTPGLL LRVAEPSGAD GAPGITRVTV PEQLQSQGIE GWSGADTAHG ENSBTAP00000027461/1-839 ---------- ---------- ---------- ---------- ---------- bmy_13376T0/1-775 ---------- ---------- ---------- ---------- ---------- BACU012722/1-864 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000386710/1-839 ---------- -MAQFDTEYQ RLEASYSDSP PGEEDLLVHV AEGSKSPWHH ENSTTRP00000009516/1-899 AGGQGGQGAV VMAQFDTEYQ RLEASYSDSP PGEEDLLVHV PEGSKSPWHH ENSBTAP00000027461/1-839 ---------- -MAQFDTEYQ RLEASYSDSP PGEEDLLVHV PEGSKSPWHH bmy_13376T0/1-775 ---------- -MAQFDTEYQ RLEASYSDSP PGEEDLLVHV PEGSK----- BACU012722/1-864 ---------- -MAQFDTEYQ RLEASYSDSP PGEEDLLVHV PEGSKSPWHH 101 150 ENSP00000386710/1-839 IENLDLFFSR ---------- ---------- -----VYNLH QKNGFTCMLI ENSTTRP00000009516/1-899 IENLDLFFSR ---------- ---------- -----VYNLH QKNGFTCMLI ENSBTAP00000027461/1-839 IENLDLFFSR ---------- ---------- -----VYNLH QKNGFTCMLI bmy_13376T0/1-775 ---------- ---------- ---------- ---------- ---------- BACU012722/1-864 IENLDLFFSR ISFVSLCWSS GTVSPSLSQA PDEKSVYNLH QKNGFTCMLI 151 200 ENSP00000386710/1-839 GEIFELMQFL FVVAFTTFLV SCVDYDILFA NKMVNHSLHP TEPVKVTLPD ENSTTRP00000009516/1-899 GEIFELMQFL FVVAFTTFLV SCVDYDILFA NKMVNHSLHP TEPVKVTLPD ENSBTAP00000027461/1-839 GEIFELMQFL FVVAFTTFLV SCVDYDILFA NKMVNHSLHP TEPVKVTLPD bmy_13376T0/1-775 -------QFL FVVAFTTFLV SCVDYDILFA NKMVNHSLHP TEPVKVTLPD BACU012722/1-864 GEIFELMQFL FVVAFTTFLV SCVDYDILFA NKMVNHSLHP TEPVKVTLPD 201 250 ENSP00000386710/1-839 AFLPAQVCSA RIQENGSLIT ILVIAGVFWI HRLIKFIYNI CCYWEIHSFY ENSTTRP00000009516/1-899 AFLPAPVCSA RIQENGSLIT ILVIAGVFWV HRLIKFIYNI CCYWEIHSFY ENSBTAP00000027461/1-839 AFLPAQVCSA RIQENGSLIT ILVIAGVFWV HRLIKFIYNI CCYWEIHSFY bmy_13376T0/1-775 AFLPAQVCSA RIQENGSLIT ILVIAGVFWV HRLIKFIYNI CCYWEIHSFY BACU012722/1-864 AFLPAQVCSA RIQENGSLIT ILVIAGVFWV HRLIKFIYNI CCYWEIHSFY 251 300 ENSP00000386710/1-839 LHALRIPMSA LPYCTWQEVQ ARIVQTQKEH QICIHKRELT ELDIYHRILR ENSTTRP00000009516/1-899 LHALRIPMSA LPYCTWQEVQ ARIVQTQKEH QICIHKRELT ELDIYHRILR ENSBTAP00000027461/1-839 LHALRIPMSA LPYCTWQEVQ ARIVQTQKEH QICIHKRELT ELDIYHRILR bmy_13376T0/1-775 LHALRIPMSA LPYCTWQEVQ ARIVQTQKEH QICIHKRELT ELDIYHRILR BACU012722/1-864 LHALRIPMSA LPYCTWQEVQ ARIVQTQKEH QICIHKRELT ELDIYHRILR 301 350 ENSP00000386710/1-839 FQNYMVALVN KSLLPLRFRL PGLGEAVFFT RGLKYNFELI LFWGPGSLFL ENSTTRP00000009516/1-899 FQNYMVALVN KSLLPLRFRL PGLGEVVFFT RGLKYNFELI LFWGPGSLFL ENSBTAP00000027461/1-839 FQNYMVALVN KSLLPLRFRL PGLGEVVFFT RGLKYNFELI LFWGPGSLFL bmy_13376T0/1-775 FQNYMVALVN KSLLPLRFRL PGLGEVVFFT RGLKYNFELI LFWGPGSLFL BACU012722/1-864 FQNYMVALVN KSLLPLRFRL PGLGEVVFFT RGLKYNFELI LFWGPGSLFL 351 400 ENSP00000386710/1-839 NEWSLKAEYK RGGQRLELAQ RLSNRILWIG IANFLLCPLI LIWQILYAFF ENSTTRP00000009516/1-899 NEWSLKAEYK RGGQRLELAQ RLSNRILWIG IANFLLCPLI LIWQILYAFF ENSBTAP00000027461/1-839 NEWSLKAEYK RGGQRLELAQ RLSNRILWIG IANFLLCPLI LIWQILYAFF bmy_13376T0/1-775 NEWSLKAEYK RGGQRLELAQ RLSNRILWIG IANFLLCPLI LIWQILYAFF BACU012722/1-864 NEWSLKAEYK RGGQRLELAQ RLSNRILWIG IANFLLCPLI LIWQILYAFF 401 450 ENSP00000386710/1-839 SYAEVLKREP GALGARCWSL YGRCYLRHFN ELEHELQSRL NRGYKPASKY ENSTTRP00000009516/1-899 SYAEVLKREP GALGARCWSL YGRCYLRHFN ELEHELQSRL NRGYKPASKY ENSBTAP00000027461/1-839 SYAEVLKREP GALGARCWSL YGRCYLRHFN ELEHELQSRL NRGYKPASKY bmy_13376T0/1-775 SYAEVLKREP GALGARCWSL YGRCYLRHFN ELEHELQSRL NRGYKPASKY BACU012722/1-864 SYAEVLKREP GALGARCWSL YGRCYLRHFN ELEHELQSRL NRGYKPASKY 451 500 ENSP00000386710/1-839 MNCFLSPLLT LLAKNGAFFA GSILAVLIAL TIYDEDVLAV EHVLTTVTLL ENSTTRP00000009516/1-899 MNCFLSPLLT LLAKNCAFFA GSILAVLIAL TIYDEDVLAV EHVLTTVTLL ENSBTAP00000027461/1-839 MNCFLSPLLT LLAKNCAFFA GSILAVLIAL TIYDEDVLAV EHVLTTVTLL bmy_13376T0/1-775 MNCFLSPLLT LLAKNCAFFA GSILAVLIAL TIYDEDVLAV EHVLTTVTLL BACU012722/1-864 MNCFLSPLLT LLAKNCAFFA GSILAVLIAL TIYDEDVLAV EHVLTTVTLL 501 550 ENSP00000386710/1-839 GVTVTVCRSF IPDQHMVFCP EQLLRVILAH IHYMPDHWQG NAHRSQTRDE ENSTTRP00000009516/1-899 GVTVTVCRSF IPDQHMVFCP EQLLRVILAH IHYMPDHWQG NAHRSQTRDE ENSBTAP00000027461/1-839 GVTVTVCRSF IPDQHMVFCP EQLLRVILAH IHYMPDHWQG NAHRSQTRDE bmy_13376T0/1-775 GVTVTVCRSF IPDQHMVFCP EQLLRVILAH IHYMPDHWQG NAHRSQTRDE BACU012722/1-864 GVTVTVCRSF IPDQHMVFCP EQLLRVILAH IHYMPDHWQG NAHRSQTRDE 551 600 ENSP00000386710/1-839 FAQLFQYKAV FILEELLSPI VTPLILIFCL RPRALEIIDF FRNFTVEVVG ENSTTRP00000009516/1-899 FAQLFQYKAV FILEELLSPI VTPLILIFCL RPRALEIIDF FRNFTVEVVG ENSBTAP00000027461/1-839 FAQLFQYKAV FILEELLSPI VTPLILIFCL RPRALEIIDF FRNFTVEVVG bmy_13376T0/1-775 FAQLFQYKAV FILEELLSPI VTPLILIFCL RPRALEIIDF FRNFTVEVVG BACU012722/1-864 FAQLFQYKAV FILEELLSPI VTPLILIFCL RPRALEIIDF FRNFTVEVVG 601 650 ENSP00000386710/1-839 VGDTCSFAQM DVRQHGHPQW LSAGQTEASV YQQAEDGKTE LSLMHFAITN ENSTTRP00000009516/1-899 VGDTCSFAQM DVRQHGHPQW LSGGQTEASV YQQAEDGKTE LSLMHFAITN ENSBTAP00000027461/1-839 VGDTCSFAQM DVRQHGHPQW LSGGQTEASV YQQAEDGKTE LSLMHFAITN bmy_13376T0/1-775 VGDTCSFAQM D--------W LSGGQTEASV YQQAEDGKTE LSLMHFAITN BACU012722/1-864 VGDTCSFAQM DVRQHGHPQW LSGGQTEASV YQQAEDGKTE LSLMHFAITN 651 700 ENSP00000386710/1-839 PGWQPPREST AFLGFLKEQV QRDGAAASLA QGGLLPENAL FTSIQSLQSE ENSTTRP00000009516/1-899 PGWQPPREST AFLGFLKEQV QRDGAAAGLA QGGLLPENAL FTSIQSLQSE ENSBTAP00000027461/1-839 PGWQPPREST AFLGFLKEQV QRDGAAAGLA QGGLLPENAL FTSIQSLQSE bmy_13376T0/1-775 PGWQPPREST AFLGFLKEQV QRDGAAAGLA QGGLLPENAL FTSIQSLQSE BACU012722/1-864 PGWQPPREST AFLGFLKEQV QRDGAAAGLA QGGLLPENAL FTSIQSLQSE 701 750 ENSP00000386710/1-839 SEPLSLIANV VAGSSCRGPP LPRDLQGSRH RAEVASALRS FSPLQPGQAP ENSTTRP00000009516/1-899 SEPLSLIANV VVGSSCRGPP LPRDLQGSRH RAEVASALRS FSPLQPGQAP ENSBTAP00000027461/1-839 SEPLSLIANV VAGSSCRGPP LPRDLQGSRH RAEVASALRS FSPLQPGQAP bmy_13376T0/1-775 SEPLSLIANV VAGSSCRGPP LPRDLQGSRH RAEVASALRS FSPLQPGQAP BACU012722/1-864 SEPLSLIANV VAGSSCRGPP LPRDLQGSRH RAEVASALRS FSPLQPGQAP 751 800 ENSP00000386710/1-839 TGRAHSTMTG SGVDARTASS GSSVWEGQLQ SLVLSEYAST EMSLHALYMH ENSTTRP00000009516/1-899 TGRAPSTMTG SGVDARTASS GSSVWEGQLQ SLVLSEYAST EMSLHALYMH ENSBTAP00000027461/1-839 TGRAPSTMTG SGVDARTASS GSSVWEGQLQ SLVLSEYAST EMSLHALYMH bmy_13376T0/1-775 TGRAPSTMTG SGVDARTASS GSSVWEGQLQ SL-------- ---------- BACU012722/1-864 TGRAPSTMTG SGVDARTASS GSSVWEGQLQ SLVLSEYAST EMSLHALYMH 801 850 ENSP00000386710/1-839 QLHKQQAQAE PERHVWHRRE SDESGESAPD EGGEGARAPQ SIPRSASYPC ENSTTRP00000009516/1-899 QLHKQQAQAE PERHVWHRRE SDESGESAPE EGGEGARGPQ PIPRSASYPC ENSBTAP00000027461/1-839 QLHKQQAQAE PERHVWHRRE SDESGESAPE EGGEGARATQ PIPRSASYPC bmy_13376T0/1-775 -LHKQQAQAE PERHVWHRRE SDESGESAPE EGGEGARGPQ PIPRSASYPC BACU012722/1-864 QLHKQQAQAE PERHVWHRRE SDESGESAPE EGGEGARGPQ PIPRSASYPC 851 900 ENSP00000386710/1-839 AAPRPGAPET TALHGGFQRR YGGITDPGTV PRVPSHFSRL PLGGWAEDGQ ENSTTRP00000009516/1-899 AASRPGAPET TALHGGFQRR YGGITDPGTV PRAPSHFSRL PLGGWAEDGQ ENSBTAP00000027461/1-839 AAPRPGAPET TALQGGFQRR YGGITDPGTV PRAPSHFSRL PLGGWAEDGQ bmy_13376T0/1-775 AAPRPGAPET TALQGGFQRR YGGITDPGTV PRAPSHFSRL PLGGWAEDGQ BACU012722/1-864 AAPRPGAPET TALQGGFQRR YGGITDPGTV PRAPSHFSRL PLGGWAEDGQ 901 950 ENSP00000386710/1-839 SASRHPEPVP EEGSEDELPP QVHKV ENSTTRP00000009516/1-899 SASRHPEG-P EEGSEDELLS QVHKV ENSBTAP00000027461/1-839 SASRHPEPVP EEGSEDELPP QVHKV bmy_13376T0/1-775 SASRHPEPVP EEGSEDELPP QVHKV BACU012722/1-864 SASRHPEPVP EEGSEDELPP QVHKV